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gnu: r-rhisat2: Update to 1.2.0.

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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
This commit is contained in:
Ricardo Wurmus 2019-12-15 15:23:31 +01:00
parent a15e52ec78
commit 3dd2450e65
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GPG key ID: 197A5888235FACAC
1 changed files with 14 additions and 4 deletions
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18
gnu/packages/bioconductor.scm
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@ -4877,18 +4877,28 @@ (define-public r-sgseq
(define-public r-rhisat2
(package
(name "r-rhisat2")
(version "1.0.3")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhisat2" version))
(sha256
(base32
"02ig9qci18n93vmya7q6bijrqsbfh69fyg8iqysf89ym2vd3x3c5"))))
"02fn5cm8sj2s9x00505y3iyipn1r3lpvpwpjy2pdxdbpmhb5hy49"))))
(properties `((upstream-name . "Rhisat2")))
(build-system r-build-system)
(native-inputs
`(("which" ,which)))
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'make-reproducible
(lambda _
(substitute* "src/Makefile"
(("`hostname`") "guix")
(("`date`") "0")
;; Avoid shelling out to "which".
(("^CC =.*") (which "gcc"))
(("^CPP =.*") (which "g++")))
#t)))))
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)