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gnu: r-rhisat2: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0. [arguments]: Add phase to make package reproducible and to avoid shelling out to 'which'. [native-inputs]: Remove which.
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1 changed files with 14 additions and 4 deletions
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@ -4877,18 +4877,28 @@ (define-public r-sgseq
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(define-public r-rhisat2
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(define-public r-rhisat2
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(package
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(package
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(name "r-rhisat2")
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(name "r-rhisat2")
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(version "1.0.3")
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(version "1.2.0")
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(source
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(source
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(origin
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(origin
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(method url-fetch)
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(method url-fetch)
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(uri (bioconductor-uri "Rhisat2" version))
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(uri (bioconductor-uri "Rhisat2" version))
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(sha256
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(sha256
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(base32
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(base32
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"02ig9qci18n93vmya7q6bijrqsbfh69fyg8iqysf89ym2vd3x3c5"))))
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"02fn5cm8sj2s9x00505y3iyipn1r3lpvpwpjy2pdxdbpmhb5hy49"))))
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(properties `((upstream-name . "Rhisat2")))
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(properties `((upstream-name . "Rhisat2")))
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(build-system r-build-system)
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(build-system r-build-system)
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(native-inputs
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(arguments
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`(("which" ,which)))
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'make-reproducible
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(lambda _
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(substitute* "src/Makefile"
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(("`hostname`") "guix")
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(("`date`") "0")
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;; Avoid shelling out to "which".
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(("^CC =.*") (which "gcc"))
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(("^CPP =.*") (which "g++")))
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#t)))))
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(propagated-inputs
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(propagated-inputs
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`(("r-genomicfeatures" ,r-genomicfeatures)
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`(("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-genomicranges" ,r-genomicranges)
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