gnu: Add r-metagenomeseq.

* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
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Mădălin Ionel Patrașcu 2023-02-23 01:35:43 +01:00 committed by Ricardo Wurmus
parent 19764c06b7
commit 3e4de18d3e
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@ -6695,6 +6695,40 @@ (define-public r-maser
and visualizaton of alternative splicing events generated by rMATS.") and visualizaton of alternative splicing events generated by rMATS.")
(license license:expat))) (license license:expat)))
(define-public r-metagenomeseq
(package
(name "r-metagenomeseq")
(version "1.40.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "metagenomeSeq" version))
(sha256
(base32 "01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"))))
(properties `((upstream-name . "metagenomeSeq")))
(build-system r-build-system)
(propagated-inputs
(list r-biobase
r-foreach
r-glmnet
r-gplots
r-limma
r-matrix
r-matrixstats
r-rcolorbrewer
r-wrench))
(native-inputs (list r-knitr))
(home-page "https://github.com/HCBravoLab/metagenomeSeq")
(synopsis "Statistical analysis for sparse high-throughput sequencing")
(description
"MetagenomeSeq is designed to determine features (be it @acronym{OTU,
Operational Taxanomic Unit}, species, etc.) that are differentially abundant
between two or more groups of multiple samples. This package is designed to
address the effects of both normalization and under-sampling of microbial
communities on disease association detection and the testing of feature
correlations.")
(license license:artistic2.0)))
(define-public r-metaneighbor (define-public r-metaneighbor
(package (package
(name "r-metaneighbor") (name "r-metaneighbor")