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gnu: doxygen: Update to 1.9.1.
* gnu/packages/patches/doxygen-1.8.17-runtests.patch, gnu/packages/patches/doxygen-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/documentation.scm (doxygen): Update to 1.9.1. [source](patches): Remove. [home-page]: Use HTTPS. [arguments]: Disable bibtex test with a phase instead of patch.
This commit is contained in:
Marius Bakke
parent
42db0f4e33
commit
4250b256d7
4 changed files with 9 additions and 140 deletions
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@ -953,8 +953,6 @@ dist_patch_DATA = \
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%D%/packages/patches/doc++-segfault-fix.patch \
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%D%/packages/patches/docker-fix-tests.patch \
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%D%/packages/patches/dovecot-trees-support-dovecot-2.3.patch \
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%D%/packages/patches/doxygen-test.patch \
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%D%/packages/patches/doxygen-1.8.17-runtests.patch \
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%D%/packages/patches/dstat-fix-crash-when-specifying-delay.patch \
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%D%/packages/patches/dstat-skip-devices-without-io.patch \
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%D%/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch \
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@ -203,8 +203,8 @@ (define-public asciidoc-py3
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(define-public doxygen
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(package
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(name "doxygen")
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(version "1.8.17")
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(home-page "http://www.doxygen.nl/")
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(version "1.9.1")
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(home-page "https://www.doxygen.nl/")
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(source (origin
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(method url-fetch)
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(uri (list (string-append home-page "files/doxygen-"
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@ -214,9 +214,7 @@ (define-public doxygen
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".src.tar.gz")))
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(sha256
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(base32
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"16dmv0gm1x8rvbm82fmjvi213q8fxqxinm75pcf595flya59ific"))
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(patches (search-patches "doxygen-test.patch"
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"doxygen-1.8.17-runtests.patch"))))
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"1lcif1qi20gf04qyjrx7x367669g17vz2ilgi4cmamp1whdsxbk7"))))
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(build-system cmake-build-system)
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(native-inputs
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`(("bison" ,bison)
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@ -236,6 +234,12 @@ (define-public doxygen
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'())
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#:test-target "tests"
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#:phases (modify-phases %standard-phases
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(add-after 'unpack 'disable-bibtex-test
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(lambda _
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;; Disable test that requires bibtex to avoid a
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;; circular dependency.
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(for-each delete-file-recursively
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'("testing/012" "testing/012_cite.dox"))))
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(add-before 'configure 'patch-sh
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "src/portable.cpp"
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@ -1,73 +0,0 @@
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1.8.17 was released with a broken test runner.
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https://github.com/doxygen/doxygen/issues/7464
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Taken from upstream:
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https://github.com/doxygen/doxygen/commit/cd9dee013dc749a10bbe019c350e0e62b6635795
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diff --git a/testing/runtests.py b/testing/runtests.py
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index a4118b865..10fe50214 100755
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--- a/testing/runtests.py
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+++ b/testing/runtests.py
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@@ -3,6 +3,7 @@
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from __future__ import print_function
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import argparse, glob, itertools, re, shutil, os, sys
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import subprocess
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+import shlex
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config_reg = re.compile('.*\/\/\s*(?P<name>\S+):\s*(?P<value>.*)$')
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@@ -28,10 +29,10 @@ def xpopen(cmd, cmd1="",encoding='utf-8-sig', getStderr=False):
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return os.popen(cmd).read() # Python 2 without encoding
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else:
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if (getStderr):
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- proc = subprocess.run(cmd1,encoding=encoding,capture_output=True) # Python 3 with encoding
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- return proc.stderr
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+ proc = subprocess.Popen(shlex.split(cmd1),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding
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+ return proc.stderr.read()
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else:
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- proc = subprocess.Popen(cmd,stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding
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+ proc = subprocess.Popen(shlex.split(cmd),stdout=subprocess.PIPE,stderr=subprocess.PIPE,encoding=encoding) # Python 3 with encoding
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return proc.stdout.read()
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class Tester:
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@@ -137,7 +138,7 @@ def prepare_test(self):
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print('GENERATE_DOCBOOK=NO', file=f)
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if (self.args.xhtml):
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print('GENERATE_HTML=YES', file=f)
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- # HTML_OUTPUT can also be set locally
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+ # HTML_OUTPUT can also have been set locally
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print('HTML_OUTPUT=%s/html' % self.test_out, file=f)
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print('HTML_FILE_EXTENSION=.xhtml', file=f)
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if (self.args.pdf):
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@@ -184,7 +185,7 @@ def update_test(self,testmgr):
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print('Non-existing file %s after \'check:\' statement' % check_file)
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return
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# convert output to canonical form
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- data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file)).read()
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+ data = xpopen('%s --format --noblanks --nowarning %s' % (self.args.xmllint,check_file))
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if data:
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# strip version
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data = re.sub(r'xsd" version="[0-9.-]+"','xsd" version=""',data).rstrip('\n')
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@@ -326,7 +327,7 @@ def perform_test(self,testmgr):
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tests.append(glob.glob('%s/*.xml' % (docbook_output)))
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tests.append(glob.glob('%s/*/*/*.xml' % (docbook_output)))
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tests = ' '.join(list(itertools.chain.from_iterable(tests))).replace(self.args.outputdir +'/','').replace('\\','/')
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- exe_string = '%s --nonet --postvalid %s' % (self.args.xmllint,tests)
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+ exe_string = '%s --noout --nonet --postvalid %s' % (self.args.xmllint,tests)
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exe_string1 = exe_string
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exe_string += ' %s' % (redirx)
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exe_string += ' %s more "%s/temp"' % (separ,docbook_output)
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@@ -346,7 +347,11 @@ def perform_test(self,testmgr):
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redirx=' 2> %s/temp >nul:'%html_output
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else:
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redirx='2>%s/temp >/dev/null'%html_output
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- exe_string = '%s --path dtd --nonet --postvalid %s/*xhtml' % (self.args.xmllint,html_output)
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+ check_file = []
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+ check_file.append(glob.glob('%s/*.xhtml' % (html_output)))
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+ check_file.append(glob.glob('%s/*/*/*.xhtml' % (html_output)))
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+ check_file = ' '.join(list(itertools.chain.from_iterable(check_file))).replace(self.args.outputdir +'/','').replace('\\','/')
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+ exe_string = '%s --noout --path dtd --nonet --postvalid %s' % (self.args.xmllint,check_file)
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exe_string1 = exe_string
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exe_string += ' %s' % (redirx)
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exe_string += ' %s more "%s/temp"' % (separ,html_output)
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@ -1,60 +0,0 @@
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Modify the expected outcome of test 012 so that it passes when bibtex is
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not in the path, as we do not wish to add texlive as an input just for this
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test.
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diff -u -r doxygen-1.8.7.orig/testing/012/citelist.xml doxygen-1.8.7/testing/012/citelist.xml
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--- doxygen-1.8.7.orig/testing/012/citelist.xml 2014-04-24 23:43:34.000000000 +0200
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+++ doxygen-1.8.7/testing/012/citelist.xml 2014-04-24 23:49:43.000000000 +0200
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@@ -6,38 +6,6 @@
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<briefdescription>
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</briefdescription>
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<detaileddescription>
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- <para>
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- <variablelist>
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- <varlistentry>
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- <term><anchor id="citelist_1CITEREF_Be09"/>[1]</term>
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- </varlistentry>
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- <listitem>
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- <para>P.<nonbreakablespace/>Belotti. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3_5">Disjunctive cuts for non-convex MINLP</ulink>. In <ulink url="#CITEREF_LeLe12">Lee and Leyffer</ulink> <ulink url="#CITEREF_LeLe12">[4]</ulink>, pages 117<ndash/>144.</para>
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- <para/>
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- </listitem>
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- <varlistentry>
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- <term><anchor id="citelist_1CITEREF_BertholdHeinzVigerske2009"/>[2]</term>
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- </varlistentry>
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- <listitem>
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- <para>T.<nonbreakablespace/>Berthold, S.<nonbreakablespace/>Heinz, and S.<nonbreakablespace/>Vigerske. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3_15">Extending a CIP framework to solve MIQCPs</ulink>. In <ulink url="#CITEREF_LeLe12">Lee and Leyffer</ulink> <ulink url="#CITEREF_LeLe12">[4]</ulink>, pages 427<ndash/>444.</para>
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- <para/>
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- </listitem>
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- <varlistentry>
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- <term><anchor id="citelist_1CITEREF_knuth79"/>[3]</term>
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- </varlistentry>
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- <listitem>
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- <para>Donald<nonbreakablespace/>E. Knuth. <emphasis>Tex and Metafont, New Directions in Typesetting</emphasis>. American Mathematical Society and Digital Press, Stanford, 1979.</para>
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- <para/>
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- </listitem>
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- <varlistentry>
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- <term><anchor id="citelist_1CITEREF_LeLe12"/>[4]</term>
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- </varlistentry>
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- <listitem>
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- <para>Jon Lee and Sven Leyffer, editors. <ulink url="http://doi.org/10.1007/978-1-4614-1927-3"><emphasis>Mixed Integer Nonlinear Programming</emphasis></ulink>, volume 154 of <emphasis>The IMA Volumes in Mathematics and its Applications</emphasis>. Springer, 2012.</para>
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- <para/>
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- </listitem>
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- </variablelist>
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- </para>
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</detaileddescription>
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</compounddef>
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</doxygen>
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diff -u -r doxygen-1.8.7.orig/testing/012/indexpage.xml doxygen-1.8.7/testing/012/indexpage.xml
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--- doxygen-1.8.7.orig/testing/012/indexpage.xml 2014-04-24 23:43:34.000000000 +0200
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+++ doxygen-1.8.7/testing/012/indexpage.xml 2014-04-24 23:44:05.000000000 +0200
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@@ -6,8 +6,8 @@
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<briefdescription>
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</briefdescription>
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<detaileddescription>
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- <para>See <ref refid="citelist_1CITEREF_knuth79" kindref="member">[3]</ref> for more info.</para>
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- <para>Other references with cross references see <ref refid="citelist_1CITEREF_Be09" kindref="member">[1]</ref> and <ref refid="citelist_1CITEREF_BertholdHeinzVigerske2009" kindref="member">[2]</ref> for more info. </para>
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+ <para>See knuth79 for more info.</para>
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+ <para>Other references with cross references see Be09 and BertholdHeinzVigerske2009 for more info. </para>
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</detaileddescription>
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</compounddef>
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</doxygen>
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