gnu: Add r-tsis.

* gnu/packages/bioinformatics.scm (r-tsis): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Navid Afkhami 2023-01-20 10:55:21 +01:00 committed by Ricardo Wurmus
parent ddfe68ebbe
commit 43b7a033e3
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@ -8216,6 +8216,38 @@ (define-public r-snapatac
single cell ATAC-seq sequencing data.")
(license license:gpl3)))
(define-public r-tsis
(let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc")
(revision "1"))
(package
(name "r-tsis")
(version (git-version "0.2.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/wyguo/TSIS")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb"))))
(properties `((upstream-name . "TSIS")))
(build-system r-build-system)
(native-inputs (list r-knitr))
(home-page "https://github.com/wyguo/TSIS")
(synopsis "Time-series isoform switch of alternative splicing")
(description
"TSIS is used for detecting transcript isoform switches in time-series
data. Transcript isoform switches occur when a pair of alternatively spliced
isoforms reverse the order of their relative expression levels. TSIS
characterizes the transcript switch by defining the isoform switch time-points
for any pair of transcript isoforms within a gene. In addition, this tool
describes the switch using five different features or metrics. Also it
filters the results with users specifications and visualizes the results
using different plots for the user to examine further details of the
switches.")
(license license:gpl3))))
(define-public r-umi4cpackage
(let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20")
(revision "1"))