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gnu: Add r-tsis.
* gnu/packages/bioinformatics.scm (r-tsis): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -8216,6 +8216,38 @@ (define-public r-snapatac
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single cell ATAC-seq sequencing data.")
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(license license:gpl3)))
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(define-public r-tsis
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(let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc")
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(revision "1"))
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(package
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(name "r-tsis")
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(version (git-version "0.2.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/wyguo/TSIS")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb"))))
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(properties `((upstream-name . "TSIS")))
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(build-system r-build-system)
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(native-inputs (list r-knitr))
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(home-page "https://github.com/wyguo/TSIS")
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(synopsis "Time-series isoform switch of alternative splicing")
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(description
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"TSIS is used for detecting transcript isoform switches in time-series
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data. Transcript isoform switches occur when a pair of alternatively spliced
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isoforms reverse the order of their relative expression levels. TSIS
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characterizes the transcript switch by defining the isoform switch time-points
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for any pair of transcript isoforms within a gene. In addition, this tool
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describes the switch using five different features or metrics. Also it
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filters the results with user’s specifications and visualizes the results
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using different plots for the user to examine further details of the
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switches.")
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(license license:gpl3))))
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(define-public r-umi4cpackage
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(let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20")
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(revision "1"))
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