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gnu: bwa: Update to 0.7.18.

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* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
[source]: Switch to git-fetch.
[supported-systems]: Add aarch64-linux.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
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Spencer King 2024-05-23 17:03:34 +00:00 committed by Zheng Junjie
parent 6efd02551d
commit 471c4322df
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1 changed files with 11 additions and 11 deletions
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gnu/packages/bioinformatics.scm
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@ -26,6 +26,7 @@
;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com>
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -4258,15 +4259,16 @@ (define-public tophat
(define-public bwa
(package
(name "bwa")
(version "0.7.17")
(version "0.7.18")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/lh3/bwa/releases/download/v"
version "/bwa-" version ".tar.bz2"))
(method git-fetch)
(uri (git-reference
(url "https://github.com/lh3/bwa")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy"))))
"1vf3iwkzxqkzhcfz2q3qyvcv3jrvbb012qy21pfgjl8lv20ywfr1"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ;no "check" target
@ -4284,12 +4286,10 @@ (define-public bwa
(install-file "libbwa.a" lib)
(install-file "README.md" doc)
(install-file "bwa.1" man))))
;; no "configure" script
(delete 'configure))))
;; no "configure" script
(delete 'configure))))
(inputs (list zlib))
;; Non-portable SSE instructions are used so building fails on platforms
;; other than x86_64.
(supported-systems '("x86_64-linux"))
(supported-systems '("x86_64-linux" "aarch64-linux"))
(home-page "https://bio-bwa.sourceforge.net/")
(synopsis "Burrows-Wheeler sequence aligner")
(description