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gnu: bwa: Update to 0.7.18.

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* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
[source]: Switch to git-fetch.
[supported-systems]: Add aarch64-linux.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
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Spencer King 2024-05-23 17:03:34 +00:00 committed by Zheng Junjie
parent 6efd02551d
commit 471c4322df
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1 changed files with 11 additions and 11 deletions
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18
gnu/packages/bioinformatics.scm
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@ -26,6 +26,7 @@
;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com> ;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com>
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -4258,15 +4259,16 @@ (define-public tophat
(define-public bwa (define-public bwa
(package (package
(name "bwa") (name "bwa")
(version "0.7.17") (version "0.7.18")
(source (origin (source (origin
(method url-fetch) (method git-fetch)
(uri (string-append (uri (git-reference
"https://github.com/lh3/bwa/releases/download/v" (url "https://github.com/lh3/bwa")
version "/bwa-" version ".tar.bz2")) (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy")))) "1vf3iwkzxqkzhcfz2q3qyvcv3jrvbb012qy21pfgjl8lv20ywfr1"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
'(#:tests? #f ;no "check" target '(#:tests? #f ;no "check" target
@ -4287,9 +4289,7 @@ (define-public bwa
;; no "configure" script ;; no "configure" script
(delete 'configure)))) (delete 'configure))))
(inputs (list zlib)) (inputs (list zlib))
;; Non-portable SSE instructions are used so building fails on platforms (supported-systems '("x86_64-linux" "aarch64-linux"))
;; other than x86_64.
(supported-systems '("x86_64-linux"))
(home-page "https://bio-bwa.sourceforge.net/") (home-page "https://bio-bwa.sourceforge.net/")
(synopsis "Burrows-Wheeler sequence aligner") (synopsis "Burrows-Wheeler sequence aligner")
(description (description