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gnu: Add r-misha.
* gnu/packages/bioinformatics.scm (r-misha): New variable.
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@ -7698,6 +7698,42 @@ (define-public r-scde
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;; See https://github.com/hms-dbmi/scde/issues/38
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(license license:gpl2)))
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(define-public r-misha
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(package
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(name "r-misha")
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(version "4.1.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/tanaylab/misha")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0bgivx3lzjh3173jsfrhb5kvhjsn53br0n4hmyx7i3dwy2cnnp2p"))
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;; Delete bundled executable.
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(snippet
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'(delete-file "exec/bigWigToWig"))))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'do-not-use-bundled-bigWigToWig
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "R/misha.R"
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(("get\\(\".GLIBDIR\"\\), \"/exec/bigWigToWig")
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(string-append "\""
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(assoc-ref inputs "kentutils")
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"/bin/bigWigToWig"))))))))
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(inputs
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`(("kentutils" ,kentutils)))
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(home-page "https://github.com/tanaylab/misha")
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(synopsis "Toolkit for analysis of genomic data")
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(description "This package is intended to help users to efficiently
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analyze genomic data resulting from various experiments.")
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(license license:gpl2)))
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(define-public r-centipede
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(package
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(name "r-centipede")
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