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gnu: Add r-rqc.
* gnu/packages/bioconductor.scm (r-rqc): New variable.
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@ -4507,3 +4507,44 @@ (define-public r-quasr
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reads, over creation of alignments and quality control plots, to the
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quantification of genomic regions of interest.")
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(license license:gpl2)))
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(define-public r-rqc
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(package
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(name "r-rqc")
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(version "1.18.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Rqc" version))
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(sha256
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(base32
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"09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g"))))
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(properties `((upstream-name . "Rqc")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biocstyle" ,r-biocstyle)
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("r-biostrings" ,r-biostrings)
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("r-biovizbase" ,r-biovizbase)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfiles" ,r-genomicfiles)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-knitr" ,r-knitr)
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("r-markdown" ,r-markdown)
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("r-plyr" ,r-plyr)
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("r-rcpp" ,r-rcpp)
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("r-reshape2" ,r-reshape2)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-shiny" ,r-shiny)
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("r-shortread" ,r-shortread)))
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(home-page "https://github.com/labbcb/Rqc")
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(synopsis "Quality control tool for high-throughput sequencing data")
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(description
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"Rqc is an optimized tool designed for quality control and assessment of
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high-throughput sequencing data. It performs parallel processing of entire
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files and produces a report which contains a set of high-resolution
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graphics.")
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(license license:gpl2+)))
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