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gnu: Add r-airpart.
* gnu/packages/bioconductor.scm (r-airpart): New variable.
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@ -2082,6 +2082,53 @@ (define-public r-agimicrorna
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objects are used so that other packages could be used as well.")
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(license license:gpl3)))
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(define-public r-airpart
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(package
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(name "r-airpart")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "airpart" version))
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(sha256
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(base32
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"0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
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(properties `((upstream-name . "airpart")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-apeglm
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r-clue
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r-complexheatmap
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r-dplyr
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r-dynamictreecut
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r-emdbook
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r-forestplot
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r-ggplot2
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r-lpsolve
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r-matrixstats
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r-mclust
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r-pbapply
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r-plyr
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r-rcolorbrewer
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r-rlang
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r-s4vectors
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r-scater
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r-singlecellexperiment
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r-smurf
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/airpart")
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(synopsis "Differential cell-type-specific allelic imbalance")
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(description
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"The airpart package identifies sets of genes displaying differential
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cell-type-specific allelic imbalance across cell types or states, utilizing
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single-cell allelic counts. It makes use of a generalized fused lasso with
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binomial observations of allelic counts to partition cell types by their
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allelic imbalance. Alternatively, a nonparametric method for partitioning
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cell types is offered. The package includes a number of visualizations and
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quality control functions for examining single cell allelic imbalance
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datasets.")
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(license license:gpl2)))
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(define-public r-amountain
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(package
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(name "r-amountain")
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