diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 914bf5ab09..2c61754cb3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13100,6 +13100,38 @@ (define-public r-mscoreutils within the R for Mass Spectrometry packages.") (license license:artistic2.0))) +(define-public r-msfeatures + (package + (name "r-msfeatures") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MsFeatures" version)) + (sha256 + (base32 "020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq")))) + (properties `((upstream-name . "MsFeatures"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mscoreutils" ,r-mscoreutils) + ("r-protgenerics" ,r-protgenerics) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/RforMassSpectrometry/MsFeatures") + (synopsis "Functionality for mass spectrometry features") + (description + "The MsFeature package defines functionality for Mass Spectrometry +features. This includes functions to group (LC-MS) features based on some of +their properties, such as retention time (coeluting features), or correlation +of signals across samples. This packge hence allows to group features, and +its results can be used as an input for the @code{QFeatures} package which +allows to aggregate abundance levels of features within each group. This +package defines concepts and functions for base and common data types, +implementations for more specific data types are expected to be implemented in +the respective packages (such as e.g. @code{xcms}).") + (license license:artistic2.0))) + (define-public r-biocio (package (name "r-biocio")