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gnu: Add r-structuralvariantannotation.

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* gnu/packages/bioconductor.scm (r-structuralvariantannotation): New variable.
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Roel Janssen 2021-05-26 16:07:17 +02:00
parent 2aa622ca7d
commit 4e9bb49688
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1 changed files with 30 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -2600,6 +2600,36 @@ (define-public r-shortread
ungapped alignment formats.")
(license license:artistic2.0)))
(define-public r-structuralvariantannotation
(package
(name "r-structuralvariantannotation")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "StructuralVariantAnnotation" version))
(sha256
(base32
"0ff40703iyf5wk77hbqhphfxnzc2wcshnjhvh66c5l0jvj9z8xvc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-dplyr" ,r-dplyr)
("r-genomicranges" ,r-genomicranges)
("r-rtracklayer" ,r-rtracklayer)
("r-stringr" ,r-stringr)
("r-assertthat" ,r-assertthat)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/StructuralVariantAnnotation/")
(synopsis "R package designed to simplify structural variant analysis")
(description
"This package contains useful helper functions for dealing with structural
variants in VCF format. The packages contains functions for parsing VCFs from
a number of popular callers as well as functions for dealing with breakpoints
involving two separate genomic loci encoded as GRanges objects.")
(license license:gpl3)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")