gnu: Add r-arraymvout.

* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
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Mădălin Ionel Patrașcu 2023-03-25 00:18:55 +01:00 committed by Ricardo Wurmus
parent 4221c3d4da
commit 4edacf416b
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@ -3516,6 +3516,42 @@ (define-public r-arrayqualitymetrics
supported.")
(license license:lgpl2.0+)))
(define-public r-arraymvout
(package
(name "r-arraymvout")
(version "1.58.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "arrayMvout" version))
(sha256
(base32 "1wdqcfa0h070lky4m2h5k4wg8lg7014y0gk95gip5zags29zjwqb"))))
(properties `((upstream-name . "arrayMvout")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-before 'install 'change-home-dir
(lambda _
;; Change from /homeless-shelter to /tmp for write permission.
(setenv "HOME" "/tmp"))))))
(propagated-inputs
(list r-affy
r-affycontam
r-biobase
r-lumi
r-mdqc
r-parody))
(home-page "https://bioconductor.org/packages/arrayMvout")
(synopsis "Multivariate outlier detection for expression array QA")
(description
"This package supports the application of diverse quality metrics to
AffyBatch instances, summarizing these metrics via PCA, and then performing
parametric outlier detection on the PCs to identify aberrant arrays with a
fixed Type I error rate.")
(license license:artistic2.0)))
(define-public r-asafe
(package
(name "r-asafe")