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gnu: r-msnbase: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
This commit is contained in:
zimoun 2021-05-21 22:25:39 +02:00 committed by Ricardo Wurmus
parent 8c7c78bfce
commit 4f030cc0db
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2 changed files with 45 additions and 45 deletions
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45
gnu/packages/bioconductor.scm
View file

@ -2517,6 +2517,51 @@ (define-public r-limma
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
(define-public r-msnbase
(package
(name "r-msnbase")
(version "2.16.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MSnbase" version))
(sha256
(base32
"0hxzs9zzljywqxr7q388hshpy1pdryhl0zkwffqbxpf5pcf92d3h"))))
(properties `((upstream-name . "MSnbase")))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-digest" ,r-digest)
("r-ggplot2" ,r-ggplot2)
("r-impute" ,r-impute)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-maldiquant" ,r-maldiquant)
("r-mass" ,r-mass)
("r-mzid" ,r-mzid)
("r-mzr" ,r-mzr)
("r-pcamethods" ,r-pcamethods)
("r-plyr" ,r-plyr)
("r-preprocesscore" ,r-preprocesscore)
("r-protgenerics" ,r-protgenerics)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-vsn" ,r-vsn)
("r-xml" ,r-xml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/lgatto/MSnbase")
(synopsis "Base functions and classes for MS-based proteomics")
(description
"This package provides basic plotting, data manipulation and processing
of mass spectrometry based proteomics data.")
(license license:artistic2.0)))
(define-public r-msnid
(package
(name "r-msnid")

45
gnu/packages/bioinformatics.scm
View file

@ -9404,51 +9404,6 @@ (define-public r-pcamethods
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
(define-public r-msnbase
(package
(name "r-msnbase")
(version "2.16.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MSnbase" version))
(sha256
(base32
"0hxzs9zzljywqxr7q388hshpy1pdryhl0zkwffqbxpf5pcf92d3h"))))
(properties `((upstream-name . "MSnbase")))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-digest" ,r-digest)
("r-ggplot2" ,r-ggplot2)
("r-impute" ,r-impute)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-maldiquant" ,r-maldiquant)
("r-mass" ,r-mass)
("r-mzid" ,r-mzid)
("r-mzr" ,r-mzr)
("r-pcamethods" ,r-pcamethods)
("r-plyr" ,r-plyr)
("r-preprocesscore" ,r-preprocesscore)
("r-protgenerics" ,r-protgenerics)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-vsn" ,r-vsn)
("r-xml" ,r-xml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/lgatto/MSnbase")
(synopsis "Base functions and classes for MS-based proteomics")
(description
"This package provides basic plotting, data manipulation and processing
of mass spectrometry based proteomics data.")
(license license:artistic2.0)))
(define-public r-aroma-light
(package
(name "r-aroma-light")