diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5e44b3ad12..c8498e9097 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1841,6 +1841,40 @@ (define-public r-msdata files for various search engines.") (license license:gpl2+))) +(define-public r-msexperiment + (package + (name "r-msexperiment") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MsExperiment" version)) + (sha256 + (base32 "06m0i60zh3xjqmsz6dpp0il833xzdfj0fm6xbhl7kmicvfrcnyfg")))) + (properties `((upstream-name . "MsExperiment"))) + (build-system r-build-system) + (propagated-inputs (list r-iranges + r-protgenerics + r-qfeatures + r-s4vectors + r-spectra + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/RforMassSpectrometry/MsExperiment") + (synopsis "Infrastructure for Mass Spectrometry experiments") + (description + "This package provides infrastructure to store and manage all aspects +related to a complete proteomics or metabolomics mass spectrometry (MS) +experiment. The @code{MsExperiment} package provides light-weight and +flexible containers for MS experiments building on the new MS infrastructure +provided by the Spectra, QFeatures and related packages. Along with raw data +representations, links to original data files and sample annotations, +additional metadata or annotations can also be stored within the +@code{MsExperiment} container. To guarantee maximum flexibility only minimal +constraints are put on the type and content of the data within the +containers.") + (license license:artistic2.0))) + (define-public r-msigdb (package (name "r-msigdb")