gnu: Add r-zellkonverter.

* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2021-10-28 17:12:04 +02:00 committed by Ricardo Wurmus
parent b36fc71953
commit 4f9f2539f3
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@ -4682,6 +4682,38 @@ (define-public r-zlibbioc
libraries for systems that do not have these available via other means.")
(license license:artistic2.0)))
(define-public r-zellkonverter
(package
(name "r-zellkonverter")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "zellkonverter" version))
(sha256
(base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"))))
(properties `((upstream-name . "zellkonverter")))
(build-system r-build-system)
(propagated-inputs
`(("r-basilisk" ,r-basilisk)
("r-cli" ,r-cli)
("r-delayedarray" ,r-delayedarray)
("r-matrix" ,r-matrix)
("r-reticulate" ,r-reticulate)
("r-s4vectors" ,r-s4vectors)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/theislab/zellkonverter")
(synopsis "Conversion between AnnData and single-cell experiments objects")
(description
"This package provides methods to convert between Python AnnData objects
and SingleCellExperiment objects. These are primarily intended for use by
downstream Bioconductor packages that wrap Python methods for single-cell data
analysis. It also includes functions to read and write H5AD files used for
saving AnnData objects to disk.")
(license license:expat)))
(define-public r-geneplotter
(package
(name "r-geneplotter")