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gnu: Add tensorflow.
* gnu/packages/machine-learning.scm (tensorflow): New variable.
This commit is contained in:
Ricardo Wurmus
Ricardo Wurmus
parent
d0a39b928c
commit
4fa16c9ae6
1 changed files with 451 additions and 0 deletions
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@ -49,6 +49,7 @@ (define-module (gnu packages machine-learning)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages dejagnu)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages glib)
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@ -65,7 +66,9 @@ (define-module (gnu packages machine-learning)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-web)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages serialization)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages sqlite)
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#:use-module (gnu packages swig)
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#:use-module (gnu packages tls)
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#:use-module (gnu packages web)
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@ -1303,3 +1306,451 @@ (define-public grpc
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applicable in last mile of distributed computing to connect devices, mobile
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applications and browsers to backend services.")
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(license license:asl2.0)))
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;; Note that Tensorflow includes a "third_party" directory, which seems to not
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;; only contain modified subsets of upstream library source code, but also
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;; adapter headers provided by Google (such as the fft.h header, which is not
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;; part of the upstream project code). The Tensorflow code includes headers
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;; from the "third_party" directory. It does not look like we can replace
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;; these headers with unmodified upstream files, so we keep them.
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(define-public tensorflow
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(package
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(name "tensorflow")
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(version "1.9.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/tensorflow/tensorflow.git")
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(commit (string-append "v" version))))
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(file-name (string-append "tensorflow-" version "-checkout"))
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(sha256
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(base32
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"0a9kwha395g3wgxfwln5j8vn9nkspmd75xldrlqdq540w996g8xa"))))
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(build-system cmake-build-system)
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(arguments
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`(#:tests? #f ; no "check" target
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#:build-type "Release"
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#:configure-flags
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(let ((protobuf (assoc-ref %build-inputs "protobuf"))
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(protobuf:native (assoc-ref %build-inputs "protobuf:native"))
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(jsoncpp (assoc-ref %build-inputs "jsoncpp"))
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(snappy (assoc-ref %build-inputs "snappy"))
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(sqlite (assoc-ref %build-inputs "sqlite")))
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(list
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;; Use protobuf from Guix
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(string-append "-Dprotobuf_STATIC_LIBRARIES="
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protobuf "/lib/libprotobuf.so")
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(string-append "-DPROTOBUF_PROTOC_EXECUTABLE="
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protobuf:native "/bin/protoc")
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;; Use snappy from Guix
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(string-append "-Dsnappy_STATIC_LIBRARIES="
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snappy "/lib/libsnappy.so")
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;; Yes, this is not actually the include directory but a prefix...
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(string-append "-Dsnappy_INCLUDE_DIR=" snappy)
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;; Use jsoncpp from Guix
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(string-append "-Djsoncpp_STATIC_LIBRARIES="
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jsoncpp "/lib/libjsoncpp.so")
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;; Yes, this is not actually the include directory but a prefix...
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(string-append "-Djsoncpp_INCLUDE_DIR=" jsoncpp)
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;; Use sqlite from Guix
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(string-append "-Dsqlite_STATIC_LIBRARIES="
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sqlite "/lib/libsqlite.a")
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;; Use system libraries wherever possible. Currently, this
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;; only affects zlib.
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"-Dsystemlib_ALL=ON"
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"-Dtensorflow_ENABLE_POSITION_INDEPENDENT_CODE=ON"
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"-Dtensorflow_BUILD_SHARED_LIB=ON"
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"-Dtensorflow_OPTIMIZE_FOR_NATIVE_ARCH=OFF"
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"-Dtensorflow_ENABLE_SSL_SUPPORT=OFF"
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"-Dtensorflow_BUILD_CONTRIB_KERNELS=OFF"))
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#:make-flags
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(list "CC=gcc")
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#:modules ((ice-9 ftw)
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(guix build utils)
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(guix build cmake-build-system))
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'set-source-file-times-to-1980
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;; At the end of the tf_python_build_pip_package target, a ZIP
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;; archive should be generated via bdist_wheel, but it fails with
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;; "ZIP does not support timestamps before 1980". Luckily,
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;; SOURCE_DATE_EPOCH is respected, which we set to some time in
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;; 1980.
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(lambda _ (setenv "SOURCE_DATE_EPOCH" "315532800") #t))
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;; See https://github.com/tensorflow/tensorflow/issues/20517#issuecomment-406373913
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(add-after 'unpack 'python3.7-compatibility
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(lambda _
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(substitute* '("tensorflow/python/eager/pywrap_tfe_src.cc"
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"tensorflow/python/lib/core/ndarray_tensor.cc"
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"tensorflow/python/lib/core/py_func.cc")
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(("PyUnicode_AsUTF8") "(char *)PyUnicode_AsUTF8"))
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(substitute* "tensorflow/c/eager/c_api.h"
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(("unsigned char async")
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"unsigned char is_async"))
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;; Remove dependency on tensorboard, a complicated but probably
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;; optional package.
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(substitute* "tensorflow/tools/pip_package/setup.py"
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((".*'tensorboard >.*") ""))
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#t))
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(add-after 'python3.7-compatibility 'chdir
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(lambda _ (chdir "tensorflow/contrib/cmake") #t))
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(add-after 'chdir 'disable-downloads
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* (find-files "external" "\\.cmake$")
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(("GIT_REPOSITORY.*") "")
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(("GIT_TAG.*") "")
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(("PREFIX ")
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"DOWNLOAD_COMMAND \"\"\nPREFIX "))
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;; Use packages from Guix
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(let ((grpc (assoc-ref inputs "grpc")))
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(substitute* "CMakeLists.txt"
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;; Sqlite
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(("include\\(sqlite\\)") "")
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(("\\$\\{sqlite_STATIC_LIBRARIES\\}")
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(string-append (assoc-ref inputs "sqlite")
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"/lib/libsqlite3.so"))
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(("sqlite_copy_headers_to_destination") "")
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;; PNG
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(("include\\(png\\)") "")
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(("\\$\\{png_STATIC_LIBRARIES\\}")
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(string-append (assoc-ref inputs "libpng")
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"/lib/libpng16.so"))
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(("png_copy_headers_to_destination") "")
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;; JPEG
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(("include\\(jpeg\\)") "")
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(("\\$\\{jpeg_STATIC_LIBRARIES\\}")
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(string-append (assoc-ref inputs "libjpeg")
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"/lib/libjpeg.so"))
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(("jpeg_copy_headers_to_destination") "")
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;; GIF
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(("include\\(gif\\)") "")
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(("\\$\\{gif_STATIC_LIBRARIES\\}")
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(string-append (assoc-ref inputs "giflib")
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"/lib/libgif.so"))
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(("gif_copy_headers_to_destination") "")
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;; lmdb
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(("include\\(lmdb\\)") "")
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(("\\$\\{lmdb_STATIC_LIBRARIES\\}")
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(string-append (assoc-ref inputs "lmdb")
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"/lib/liblmdb.so"))
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(("lmdb_copy_headers_to_destination") "")
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;; Protobuf
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(("include\\(protobuf\\)") "")
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(("protobuf_copy_headers_to_destination") "")
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(("^ +protobuf") "")
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;; gRPC
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(("include\\(grpc\\)")
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"find_package(grpc REQUIRED NAMES gRPC)")
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(("list\\(APPEND tensorflow_EXTERNAL_DEPENDENCIES grpc\\)") "")
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;; Eigen
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(("include\\(eigen\\)")
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(string-append "find_package(eigen REQUIRED NAMES Eigen3)
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set(eigen_INCLUDE_DIRS ${CMAKE_CURRENT_BINARY_DIR}/external/eigen_archive "
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(assoc-ref inputs "eigen") "/include/eigen3)"))
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(("^ +eigen") "")
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;; snappy
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(("include\\(snappy\\)")
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"add_definitions(-DTF_USE_SNAPPY)")
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(("list\\(APPEND tensorflow_EXTERNAL_DEPENDENCIES snappy\\)") "")
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;; jsoncpp
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(("include\\(jsoncpp\\)") "")
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(("^ +jsoncpp") ""))
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(substitute* "tf_core_framework.cmake"
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((" grpc") "")
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(("\\$\\{GRPC_BUILD\\}/grpc_cpp_plugin")
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(which "grpc_cpp_plugin"))
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;; Link with gRPC libraries
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(("add_library\\(tf_protos_cc.*" m)
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(string-append m
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(format #f "\ntarget_link_libraries(tf_protos_cc PRIVATE \
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~a/lib/libgrpc++_unsecure.a \
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~a/lib/libgrpc_unsecure.a \
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~a/lib/libaddress_sorting.a \
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~a/lib/libgpr.a \
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~a//lib/libcares.so
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)\n"
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grpc grpc grpc grpc
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(assoc-ref inputs "c-ares"))))))
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(substitute* "tf_tools.cmake"
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(("add_dependencies\\(\\$\\{proto_text.*") ""))
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;; Remove dependency on bundled grpc
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(substitute* "tf_core_distributed_runtime.cmake"
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(("tf_core_cpu grpc") "tf_core_cpu"))
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;; This directory is a dependency of many targets.
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(mkdir-p "protobuf")
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#t))
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(add-after 'configure 'unpack-third-party-sources
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(lambda* (#:key inputs #:allow-other-keys)
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;; This is needed to configure bundled packages properly.
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(setenv "CONFIG_SHELL" (which "bash"))
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(for-each
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(lambda (name)
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(let* ((what (assoc-ref inputs (string-append name "-src")))
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(name* (string-map (lambda (c)
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(if (char=? c #\-)
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#\_ c)) name))
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(where (string-append "../build/" name* "/src/" name*)))
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(cond
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((string-suffix? ".zip" what)
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(mkdir-p where)
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(with-directory-excursion where
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(invoke "unzip" what)))
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((string-suffix? ".tar.gz" what)
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(mkdir-p where)
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(invoke "tar" "xf" what
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"-C" where "--strip-components=1"))
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(else
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(let ((parent (dirname where)))
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(mkdir-p parent)
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(with-directory-excursion parent
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(when (file-exists? name*)
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(delete-file-recursively name*))
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(copy-recursively what name*)
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(map make-file-writable
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(find-files name* ".*"))))))))
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(list "boringssl"
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"cub"
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"double-conversion"
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"farmhash"
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"fft2d"
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"highwayhash"
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"nsync"
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"re2"))
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(rename-file "../build/cub/src/cub/cub-1.8.0/"
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"../build/cub/src/cub/cub/")
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#t))
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(add-after 'unpack 'fix-python-build
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(mkdir-p "protobuf-src")
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(invoke "tar" "xf" (assoc-ref inputs "protobuf:src")
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"-C" "protobuf-src" "--strip-components=1")
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(mkdir-p "eigen-src")
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(invoke "tar" "xf" (assoc-ref inputs "eigen:src")
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"-C" "eigen-src" "--strip-components=1")
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(substitute* "tensorflow/contrib/cmake/tf_python.cmake"
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;; Ensure that all Python dependencies can be found at build time.
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(("PYTHONPATH=\\$\\{CMAKE_CURRENT_BINARY_DIR\\}/tf_python" m)
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(string-append m ":" (getenv "PYTHONPATH")))
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;; Take protobuf source files from our source package.
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(("\\$\\{CMAKE_CURRENT_BINARY_DIR\\}/protobuf/src/protobuf/src/google")
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(string-append (getcwd) "/protobuf-src/src/google")))
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(substitute* '("tensorflow/contrib/cmake/tf_shared_lib.cmake"
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"tensorflow/contrib/cmake/tf_python.cmake")
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;; Take Eigen source files from our source package.
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(("\\$\\{CMAKE_CURRENT_BINARY_DIR\\}/eigen/src/eigen/")
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(string-append (getcwd) "/eigen-src/"))
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;; Take Eigen headers from our own package.
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(("\\$\\{CMAKE_CURRENT_BINARY_DIR\\}/external/eigen_archive")
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(string-append (assoc-ref inputs "eigen") "/include/eigen3")))
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;; Correct the RUNPATH of ops libraries generated for Python.
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;; TODO: this doesn't work :(
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;; /gnu/store/...-tensorflow-1.9.0/lib/python3.7/site-packages/tensorflow/contrib/seq2seq/python/ops/lib_beam_search_ops.so:
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;; warning: RUNPATH contains bogus entries: ("/tmp/guix-build-tensorflow-1.9.0.drv-0/source/tensorflow/contrib/build")
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;; /gnu/store/...-tensorflow-1.9.0/lib/python3.7/site-packages/tensorflow/contrib/seq2seq/python/ops/lib_beam_search_ops.so:
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;; error: depends on 'libpywrap_tensorflow_internal.so', which
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;; cannot be found in RUNPATH ...
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(substitute* "tensorflow/contrib/cmake/tf_cc_ops.cmake"
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(("set_target_properties.*")
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(string-append "set_target_properties(${_AT_TARGET} PROPERTIES \
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COMPILE_FLAGS ${target_compile_flags} \
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INSTALL_RPATH_USE_LINK_PATH TRUE \
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INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n")))
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#t))
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(add-after 'build 'build-pip-package
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(lambda* (#:key outputs #:allow-other-keys)
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(setenv "LDFLAGS"
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(string-append "-Wl,-rpath="
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(assoc-ref outputs "out") "/lib"))
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(invoke "make" "tf_python_build_pip_package")
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#t))
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(add-after 'build-pip-package 'install-python
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out"))
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(wheel (car (find-files "../build/tf_python/dist/" "\\.whl$"))))
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(invoke "python" "-m" "pip" "install" wheel
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(string-append "--prefix=" out))
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;; XXX: broken RUNPATH, see fix-python-build phase.
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(delete-file
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(string-append
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out "/lib/python3.7/site-packages/tensorflow/contrib/"
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"seq2seq/python/ops/lib_beam_search_ops.so"))
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#t))))))
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(native-inputs
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`(("pkg-config" ,pkg-config)
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("protobuf:native" ,protobuf-next) ; protoc
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("protobuf:src" ,(package-source protobuf-next))
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("eigen:src" ,(package-source eigen-for-tensorflow))
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;; The commit hashes and URLs for third-party source code are taken
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;; from "tensorflow/workspace.bzl".
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("boringssl-src"
|
||||
,(let ((commit "ee7aa02")
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(revision "1"))
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(origin
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(method git-fetch)
|
||||
(uri (git-reference
|
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(url "https://boringssl.googlesource.com/boringssl")
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(commit commit)))
|
||||
(file-name (string-append "boringssl-0-" revision
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(string-take commit 7)
|
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"-checkout"))
|
||||
(sha256
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||||
(base32
|
||||
"1jf693q0nw0adsic6cgmbdx6g7wr4rj4vxa8j1hpn792fqhd8wgw")))))
|
||||
("cub-src"
|
||||
,(let ((version "1.8.0"))
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(origin
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||||
(method url-fetch)
|
||||
(uri (string-append "https://mirror.bazel.build/github.com/NVlabs/"
|
||||
"cub/archive/" version ".zip"))
|
||||
(file-name (string-append "cub-" version ".zip"))
|
||||
(sha256
|
||||
(base32
|
||||
"1hsqikqridb90dkxkjr2918dcry6pfh46ccnwrzawl56aamhdykb")))))
|
||||
("double-conversion-src"
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||||
,(let ((commit "5664746")
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||||
(revision "1"))
|
||||
(origin
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||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/google/double-conversion.git")
|
||||
(commit commit)))
|
||||
(file-name
|
||||
(git-file-name "double-conversion"
|
||||
(string-append "0-" revision "."
|
||||
(string-take commit 7))))
|
||||
(sha256
|
||||
(base32
|
||||
"1h5lppqqxcvdg5jq42i5msgwx20ryij3apvmndflngrgdpc04gn1")))))
|
||||
("farmhash-src"
|
||||
,(let ((commit "816a4ae622e964763ca0862d9dbd19324a1eaf45"))
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"https://mirror.bazel.build/github.com/google/farmhash/archive/"
|
||||
commit ".tar.gz"))
|
||||
(file-name (string-append "farmhash-0-" (string-take commit 7)
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||||
".tar.gz"))
|
||||
(sha256
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||||
(base32
|
||||
"185b2xdxl4d4cnsnv6abg8s22gxvx8673jq2yaq85bz4cdy58q35")))))
|
||||
;; The license notice on the home page at
|
||||
;; http://www.kurims.kyoto-u.ac.jp/~ooura/fft.html says:
|
||||
;; Copyright Takuya OOURA, 1996-2001
|
||||
;;
|
||||
;; You may use, copy, modify and distribute this code for any purpose
|
||||
;; (include commercial use) and without fee. Please refer to this
|
||||
;; package when you modify this code.
|
||||
;;
|
||||
;; We take the identical tarball from the Bazel mirror, because the URL
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||||
;; at the home page is not versioned and might change.
|
||||
("fft2d-src"
|
||||
,(origin
|
||||
(method url-fetch)
|
||||
(uri "https://mirror.bazel.build/www.kurims.kyoto-u.ac.jp/~ooura/fft.tgz")
|
||||
(file-name "fft2d.tar.gz")
|
||||
(sha256
|
||||
(base32
|
||||
"15jjkfvhqvl2c0753d2di8hz0pyzn598g74wqy79awdrf1y67fsj"))))
|
||||
("highwayhash-src"
|
||||
,(let ((commit "be5edafc2e1a455768e260ccd68ae7317b6690ee")
|
||||
(revision "1"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/google/highwayhash.git")
|
||||
(commit commit)))
|
||||
(file-name (string-append "highwayhash-0-" revision
|
||||
(string-take commit 7)
|
||||
"-checkout"))
|
||||
(sha256
|
||||
(base32
|
||||
"154jwf98cyy54hldr94pgjn85zynly3abpnc1avmb8a18lzwjyb6")))))
|
||||
("nsync-src"
|
||||
,(let ((version "0559ce013feac8db639ee1bf776aca0325d28777")
|
||||
(revision "1"))
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "https://mirror.bazel.build/"
|
||||
"github.com/google/nsync/archive/"
|
||||
version ".tar.gz"))
|
||||
(file-name (string-append "nsync-0." revision
|
||||
"-" (string-take version 7)
|
||||
".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"0qdkyqym34x739mmzv97ah5r7ph462v5xkxqxvidmcfqbi64b132")))))
|
||||
("re2-src"
|
||||
,(let ((commit "e7efc48")
|
||||
(revision "1"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/google/re2")
|
||||
(commit commit)))
|
||||
(file-name (string-append "re2-0-" revision
|
||||
(string-take commit 7)
|
||||
"-checkout"))
|
||||
(sha256
|
||||
(base32
|
||||
"161g9841rjfsy5pn52fcis0s9hdr7rxvb06pad38j5rppfihvign")))))
|
||||
("googletest" ,googletest)
|
||||
("swig" ,swig)
|
||||
("unzip" ,unzip)))
|
||||
(propagated-inputs
|
||||
`(("python-absl-py" ,python-absl-py)
|
||||
("python-astor" ,python-astor)
|
||||
("python-gast" ,python-gast)
|
||||
("python-grpcio" ,python-grpcio)
|
||||
("python-numpy" ,python-numpy)
|
||||
("python-protobuf" ,python-protobuf-next)
|
||||
("python-six" ,python-six)
|
||||
("python-termcolo" ,python-termcolor)
|
||||
("python-wheel" ,python-wheel)))
|
||||
(inputs
|
||||
`(("c-ares" ,c-ares-next)
|
||||
("eigen" ,eigen-for-tensorflow)
|
||||
("gemmlowp" ,gemmlowp-for-tensorflow)
|
||||
("lmdb" ,lmdb)
|
||||
("libjpeg" ,libjpeg)
|
||||
("libpng" ,libpng)
|
||||
("giflib" ,giflib)
|
||||
("grpc" ,grpc)
|
||||
("jsoncpp" ,jsoncpp-for-tensorflow)
|
||||
("snappy" ,snappy)
|
||||
("sqlite" ,sqlite)
|
||||
("protobuf" ,protobuf-next)
|
||||
("python" ,python-wrapper)
|
||||
("zlib" ,zlib)))
|
||||
(home-page "https://tensorflow.org")
|
||||
(synopsis "Machine learning framework")
|
||||
(description
|
||||
"TensorFlow is a flexible platform for building and training machine
|
||||
learning models. It provides a library for high performance numerical
|
||||
computation and includes high level Python APIs, including both a sequential
|
||||
API for beginners that allows users to build models quickly by plugging
|
||||
together building blocks and a subclassing API with an imperative style for
|
||||
advanced research.")
|
||||
(license license:asl2.0)))
|
||||
|
|
|
|||
Loading…
Reference in a new issue