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gnu: Add r-quantsmooth.

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* gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
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Mădălin Ionel Patrașcu 2023-02-02 03:26:55 +01:00 committed by Ricardo Wurmus
parent b4d90dfdb8
commit 4fb1703a0a
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gnu/packages/bioconductor.scm
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@ -8767,6 +8767,33 @@ (define-public r-oligo
Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
(license license:lgpl2.0+)))
(define-public r-quantsmooth
(package
(name "r-quantsmooth")
(version "1.64.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "quantsmooth" version))
(sha256
(base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"))))
(properties `((upstream-name . "quantsmooth")))
(build-system r-build-system)
(propagated-inputs (list r-quantreg))
(home-page "https://bioconductor.org/packages/quantsmooth")
(synopsis "Quantile smoothing and genomic visualization of array data")
(description
"This package implements quantile smoothing. It contains a dataset used
to produce human chromosomal ideograms for plotting purposes and a collection
of arrays that contains data of chromosome 14 of 3 colorectal tumors. The
package provides functions for painting chromosomal icons, chromosome or
chromosomal idiogram and other types of plots. Quantsmooth offers options
like converting chromosomal ids to their numeric form, retrieving the human
chromosomal length from NCBI data, retrieving regions of interest in a vector
of intensities using quantile smoothing, determining cytoband position based
on the location of the probe, and other useful tools.")
(license license:gpl2)))
(define-public r-qvalue
(package
(name "r-qvalue")