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profiles: Do not repeat entries in 'manifest' file.
Fixes <https://issues.guix.gnu.org/55499>. Reported by Ricardo Wurmus <rekado@elephly.net>. With this change, the manifest file created for: guix install r r-seurat r-cistopic r-monocle3 r-cicero-monocle3 r-assertthat goes from 5.7M to 176K. Likewise, on this profile, wall-clock time of: GUIX_PROFILING=gc guix package -I goes from 0.7s to 0.1s, with heap usage going from 55M to 9M. * guix/profiles.scm (manifest->gexp)[optional]: New procedure. [entry->gexp]: Turn into a monadic procedure. Return a 'repeated' sexp if ENTRY was already visited before. Adjust caller accordingly. Bump manifest version. (sexp->manifest)[sexp->manifest-entry]: Turn into a monadic procedure. Add case for 'repeated' nodes. Add each entry to the current state vhash. Add clause for version 4 manifests. [sexp->manifest-entry/v3]: New procedure, with former 'sexp->manifest-entry' code. * tests/profiles.scm ("deduplication of repeated entries"): New test. * guix/build/profiles.scm (manifest-sexp->inputs+search-paths)[let-fields]: New macro. Use it. Expect version 4. Add clause for 'repeated' nodes.
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3 changed files with 181 additions and 32 deletions
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@ -149,19 +149,33 @@ (define (manifest-sexp->inputs+search-paths manifest)
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"Parse MANIFEST, an sexp as produced by 'manifest->gexp', and return two
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values: the list of store items of its manifest entries, and the list of
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search path specifications."
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(define-syntax let-fields
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(syntax-rules ()
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;; Bind the fields NAME of LST to same-named variables in the lexical
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;; scope of BODY.
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((_ lst (name rest ...) body ...)
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(let ((name (match (assq 'name lst)
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((_ value) value)
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(#f '()))))
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(let-fields lst (rest ...) body ...)))
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((_ lst () body ...)
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(begin body ...))))
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(match manifest ;this must match 'manifest->gexp'
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(('manifest ('version 3)
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(('manifest ('version 4)
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('packages (entries ...)))
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(let loop ((entries entries)
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(inputs '())
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(search-paths '()))
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(match entries
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(((name version output item
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('propagated-inputs deps)
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('search-paths paths) _ ...) . rest)
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(loop (append rest deps) ;breadth-first traversal
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(cons item inputs)
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(append paths search-paths)))
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(((name version output item fields ...) . rest)
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(let ((paths search-paths))
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(let-fields fields (propagated-inputs search-paths properties)
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(loop (append rest propagated-inputs) ;breadth-first traversal
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(cons item inputs)
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(append search-paths paths)))))
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((('repeated name version item) . rest)
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(loop rest inputs search-paths))
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(()
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(values (reverse inputs)
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(delete-duplicates
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@ -212,4 +226,8 @@ (define manifest-file
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;; Write 'OUTPUT/etc/profile'.
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(build-etc/profile output search-paths)))
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;;; Local Variables:
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;;; eval: (put 'let-fields 'scheme-indent-function 2)
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;;; End:
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;;; profile.scm ends here
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@ -454,32 +454,58 @@ (define (inferior->entry)
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(define (manifest->gexp manifest)
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"Return a representation of MANIFEST as a gexp."
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(define (optional name value)
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(if (null? value)
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#~()
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#~((#$name #$value))))
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(define (entry->gexp entry)
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(match entry
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(($ <manifest-entry> name version output (? string? path)
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(deps ...) (search-paths ...) _ (properties ...))
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#~(#$name #$version #$output #$path
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(propagated-inputs #$(map entry->gexp deps))
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(search-paths #$(map search-path-specification->sexp
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search-paths))
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#$@(if (null? properties)
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#~()
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#~((properties . #$properties)))))
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(($ <manifest-entry> name version output package
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(deps ...) (search-paths ...) _ (properties ...))
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#~(#$name #$version #$output
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(ungexp package (or output "out"))
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(propagated-inputs #$(map entry->gexp deps))
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(search-paths #$(map search-path-specification->sexp
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search-paths))
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#$@(if (null? properties)
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#~()
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#~((properties . #$properties)))))))
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;; Maintain in state monad a vhash of visited entries, indexed by their
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;; item, usually package objects (we cannot use the entry itself as an
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;; index since identical entries are usually not 'eq?'). Use that vhash
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;; to avoid repeating duplicate entries. This is particularly useful in
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;; the presence of propagated inputs, where we could otherwise end up
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;; repeating large trees.
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(mlet %state-monad ((visited (current-state)))
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(if (match (vhash-assq (manifest-entry-item entry) visited)
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((_ . previous-entry)
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(manifest-entry=? previous-entry entry))
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(#f #f))
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(return #~(repeated #$(manifest-entry-name entry)
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#$(manifest-entry-version entry)
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(ungexp (manifest-entry-item entry)
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(manifest-entry-output entry))))
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(mbegin %state-monad
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(set-current-state (vhash-consq (manifest-entry-item entry)
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entry visited))
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(mlet %state-monad ((deps (mapm %state-monad entry->gexp
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(manifest-entry-dependencies entry))))
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(return
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(match entry
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(($ <manifest-entry> name version output (? string? path)
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(_ ...) (search-paths ...) _ (properties ...))
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#~(#$name #$version #$output #$path
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#$@(optional 'propagated-inputs deps)
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#$@(optional 'search-paths
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(map search-path-specification->sexp
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search-paths))
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#$@(optional 'properties properties)))
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(($ <manifest-entry> name version output package
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(_deps ...) (search-paths ...) _ (properties ...))
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#~(#$name #$version #$output
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(ungexp package (or output "out"))
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#$@(optional 'propagated-inputs deps)
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#$@(optional 'search-paths
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(map search-path-specification->sexp
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search-paths))
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#$@(optional 'properties properties))))))))))
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(match manifest
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(($ <manifest> (entries ...))
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#~(manifest (version 3)
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(packages #$(map entry->gexp entries))))))
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#~(manifest (version 4)
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(packages #$(run-with-state
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(mapm %state-monad entry->gexp entries)
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vlist-null))))))
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(define (find-package name version)
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"Return a package from the distro matching NAME and possibly VERSION. This
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@ -520,14 +546,15 @@ (define (infer-dependency item parent)
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(item item)
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(parent parent))))
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(define* (sexp->manifest-entry sexp #:optional (parent (delay #f)))
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(define* (sexp->manifest-entry/v3 sexp #:optional (parent (delay #f)))
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;; Read SEXP as a version 3 manifest entry.
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(match sexp
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((name version output path
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('propagated-inputs deps)
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('search-paths search-paths)
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extra-stuff ...)
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;; For each of DEPS, keep a promise pointing to ENTRY.
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(letrec* ((deps* (map (cut sexp->manifest-entry <> (delay entry))
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(letrec* ((deps* (map (cut sexp->manifest-entry/v3 <> (delay entry))
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deps))
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(entry (manifest-entry
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(name name)
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@ -542,6 +569,56 @@ (define* (sexp->manifest-entry sexp #:optional (parent (delay #f)))
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'())))))
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entry))))
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(define-syntax let-fields
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(syntax-rules ()
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;; Bind the fields NAME of LST to same-named variables in the lexical
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;; scope of BODY.
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((_ lst (name rest ...) body ...)
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(let ((name (match (assq 'name lst)
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((_ value) value)
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(#f '()))))
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(let-fields lst (rest ...) body ...)))
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((_ lst () body ...)
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(begin body ...))))
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(define* (sexp->manifest-entry sexp #:optional (parent (delay #f)))
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(match sexp
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(('repeated name version path)
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;; This entry is the same as another one encountered earlier; look it
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;; up and return it.
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(mlet %state-monad ((visited (current-state))
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(key -> (list name version path)))
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(match (vhash-assoc key visited)
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(#f
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(raise (formatted-message
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(G_ "invalid repeated entry in profile: ~s")
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sexp)))
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((_ . entry)
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(return entry)))))
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((name version output path fields ...)
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(let-fields fields (propagated-inputs search-paths properties)
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(mlet* %state-monad
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((entry -> #f)
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(deps (mapm %state-monad
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(cut sexp->manifest-entry <> (delay entry))
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propagated-inputs))
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(visited (current-state))
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(key -> (list name version path)))
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(set! entry ;XXX: emulate 'letrec*'
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(manifest-entry
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(name name)
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(version version)
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(output output)
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(item path)
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(dependencies deps)
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(search-paths (map sexp->search-path-specification
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search-paths))
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(parent parent)
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(properties properties)))
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(mbegin %state-monad
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(set-current-state (vhash-cons key entry visited))
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(return entry)))))))
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(match sexp
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(('manifest ('version 0)
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('packages ((name version output path) ...)))
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@ -608,7 +685,15 @@ (define* (sexp->manifest-entry sexp #:optional (parent (delay #f)))
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;; Version 3 represents DEPS as full-blown manifest entries.
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(('manifest ('version 3 minor-version ...)
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('packages (entries ...)))
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(manifest (map sexp->manifest-entry entries)))
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(manifest (map sexp->manifest-entry/v3 entries)))
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;; Version 4 deduplicates repeated entries and makes manifest entry fields
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;; such as 'propagated-inputs' and 'search-paths' optional.
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(('manifest ('version 4 minor-version ...)
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('packages (entries ...)))
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(manifest (run-with-state
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(mapm %state-monad sexp->manifest-entry entries)
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vlist-null)))
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(_
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(raise (condition
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(&message (message "unsupported manifest format")))))))
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@ -2317,4 +2402,8 @@ (define (user-friendly-profile profile)
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%known-shorthand-profiles)
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profile))
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;;; Local Variables:
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;;; eval: (put 'let-fields 'scheme-indent-function 2)
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;;; End:
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;;; profiles.scm ends here
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@ -586,6 +586,48 @@ (define (entry->sexp entry)
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#:locales? #f)))
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(return #f)))))
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(test-assertm "deduplication of repeated entries"
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;; Make sure the 'manifest' file does not duplicate identical entries.
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;; See <https://issues.guix.gnu.org/55499>.
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(mlet* %store-monad ((p0 -> (dummy-package "p0"
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(build-system trivial-build-system)
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(arguments
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`(#:guile ,%bootstrap-guile
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#:builder (mkdir (assoc-ref %outputs "out"))))
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(propagated-inputs
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`(("guile" ,%bootstrap-guile)))))
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(p1 -> (package
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(inherit p0)
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(name "p1")))
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(drv (profile-derivation (packages->manifest
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(list p0 p1))
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#:hooks '()
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#:locales? #f)))
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(mbegin %store-monad
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(built-derivations (list drv))
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(let ((file (string-append (derivation->output-path drv)
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"/manifest"))
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(manifest (profile-manifest (derivation->output-path drv))))
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(define (contains-repeated? sexp)
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(match sexp
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(('repeated _ ...) #t)
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((lst ...) (any contains-repeated? sexp))
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(_ #f)))
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(return (and (contains-repeated? (call-with-input-file file read))
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;; MANIFEST has two entries for %BOOTSTRAP-GUILE since
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;; it's propagated both from P0 and from P1. When
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;; reading a 'repeated' node, 'read-manifest' should
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;; reuse the previously-read entry so the two
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;; %BOOTSTRAP-GUILE entries must be 'eq?'.
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(match (manifest-entries manifest)
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(((= manifest-entry-dependencies (dep0))
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(= manifest-entry-dependencies (dep1)))
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(and (string=? (manifest-entry-name dep0)
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(package-name %bootstrap-guile))
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(eq? dep0 dep1))))))))))
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(test-assertm "no collision"
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;; Here we have an entry that is "lowered" (its 'item' field is a store file
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;; name) and another entry (its 'item' field is a package) that is
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