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gnu: netcdf: Remove input labels and use gexps.
* gnu/packages/maths.scm (netcdf)[inputs]: Remove labels. [arguments]: Use gexps. (netcdf-parallel-openmpi): Use ‘package/inherit’. [inputs]: Remove labels. [arguments]: Use gexps. Change-Id: Ibf133cd3eea20cbaf7c3d2e407370225f8716d10
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1 changed files with 54 additions and 53 deletions
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@ -2303,44 +2303,45 @@ (define-public netcdf
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(native-inputs
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(list m4 doxygen graphviz))
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(inputs
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`(("curl" ,curl)
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("hdf4" ,hdf4-alt)
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("hdf5" ,hdf5)
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("libjpeg" ,libjpeg-turbo)
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("libxml2" ,libxml2)
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("unzip" ,unzip)
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("zlib" ,zlib)))
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(list curl
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hdf4-alt
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hdf5
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libjpeg-turbo
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libxml2
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unzip
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zlib))
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(arguments
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`(#:configure-flags '("--enable-doxygen"
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"--enable-dot"
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"--enable-hdf4"
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"--disable-dap-remote-tests")
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(list #:configure-flags
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#~'("--enable-doxygen" "--enable-dot"
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"--enable-hdf4" "--disable-dap-remote-tests")
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#:phases (modify-phases %standard-phases
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(add-before 'configure 'fix-source-date
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(lambda _
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;; As we ${SOURCE_DATE_EPOCH} evaluates to "1" in the build
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;; environment, `date -u -d ${SOURCE_DATE_EPOCH}` will evaluate
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;; to '1st hour of the current day', and therefore makes the
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;; package not reproducible.
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(substitute* "./configure"
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(("date -u -d \"\\$\\{SOURCE_DATE_EPOCH\\}\"")
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"date --date='@0'"))))
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(add-after 'configure 'patch-settings
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(lambda _
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;; libnetcdf.settings contains the full filename of the compilers
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;; used to build the library. We truncate the hashes of those
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;; filenames to avoid unnecessary references to the corresponding
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;; store items.
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(substitute* "libnetcdf.settings"
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(("(/gnu/store/)([0-9A-Za-z]*)" all prefix hash)
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(string-append prefix (string-take hash 10) "...")))))
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(add-before 'check 'fix-test-rcmerge
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(lambda _
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;; Set HOME, to fix the test-rcmerge test.
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(setenv "HOME" "/tmp"))))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'configure 'fix-source-date
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(lambda _
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;; As we ${SOURCE_DATE_EPOCH} evaluates to "1" in the build
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;; environment, `date -u -d ${SOURCE_DATE_EPOCH}` will evaluate
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;; to '1st hour of the current day', and therefore makes the
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;; package not reproducible.
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(substitute* "./configure"
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(("date -u -d \"\\$\\{SOURCE_DATE_EPOCH\\}\"")
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"date --date='@0'"))))
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(add-after 'configure 'patch-settings
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(lambda _
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;; libnetcdf.settings contains the full filename of the compilers
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;; used to build the library. We truncate the hashes of those
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;; filenames to avoid unnecessary references to the corresponding
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;; store items.
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(substitute* "libnetcdf.settings"
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(("(/gnu/store/)([0-9A-Za-z]*)" all prefix hash)
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(string-append prefix
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(string-take hash 10) "...")))))
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(add-before 'check 'fix-test-rcmerge
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(lambda _
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;; Set HOME, to fix the test-rcmerge test.
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(setenv "HOME" "/tmp"))))
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#:parallel-tests? #f)) ;various race conditions
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#:parallel-tests? #f)) ;various race conditions
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(home-page "https://www.unidata.ucar.edu/software/netcdf/")
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(synopsis "Library for scientific data")
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(description "NetCDF is an interface for scientific data access and a
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@ -2382,29 +2383,29 @@ (define-public pnetcdf
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(license (license:x11-style "file://COPYRIGHT"))))
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(define-public netcdf-parallel-openmpi
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(package (inherit netcdf)
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(package/inherit netcdf
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(name "netcdf-parallel-openmpi")
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(inputs
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`(("mpi" ,openmpi)
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("pnetcdf" ,pnetcdf)
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,@(alist-replace "hdf5" (list hdf5-parallel-openmpi)
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(package-inputs netcdf))))
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(inputs (modify-inputs (package-inputs netcdf)
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(append openmpi pnetcdf)
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(replace "hdf5" hdf5-parallel-openmpi)))
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;; TODO: Replace pkg-config references in nc-config with absolute references
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(arguments
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(substitute-keyword-arguments (package-arguments netcdf)
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((#:configure-flags flags)
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`(cons* "CC=mpicc" "CXX=mpicxx"
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"--enable-parallel-tests"
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;; Enable support of CDF-1, 2 and 5 formats.
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"--enable-pnetcdf"
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;; NetCDF supports both parallel and shared library building
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;; See https://docs.unidata.ucar.edu/nug/current/getting_and_building_netcdf.html#build_parallel
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"--enable-shared" "--with-pic"
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,flags))
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((#:phases phases '%standard-phases)
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`(modify-phases ,phases
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(add-after 'build 'mpi-setup
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,%openmpi-setup)))))))
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#~(cons* "CC=mpicc"
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"CXX=mpicxx"
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"--enable-parallel-tests"
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;; Enable support of CDF-1, 2 and 5 formats.
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"--enable-pnetcdf"
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;; NetCDF supports both parallel and shared library building
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;; See https://docs.unidata.ucar.edu/nug/current/getting_and_building_netcdf.html#build_parallel
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"--enable-shared"
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"--with-pic"
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#$flags))
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((#:phases phases #~%standard-phases)
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#~(modify-phases #$phases
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(add-after 'build 'mpi-setup
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#$%openmpi-setup)))))))
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(define-public netcdf-fortran
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(package
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