ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-24 21:38:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add r-rhisat2.

Browse source 
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
This commit is contained in:
Ricardo Wurmus 2019-05-10 13:12:07 +02:00
parent 1444153913
commit 5865606459
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 29 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

29
gnu/packages/bioconductor.scm
View file

@ -24,6 +24,7 @@ (define-module (gnu packages bioconductor)
#:use-module (guix download)
#:use-module (guix build-system r)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
@ -4433,3 +4434,31 @@ (define-public r-sgseq
for splice event prediction, quantification, visualization and
interpretation.")
(license license:artistic2.0)))
(define-public r-rhisat2
(package
(name "r-rhisat2")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhisat2" version))
(sha256
(base32
"1d1gwl8l2z8kzfvkp1s8vfrh6jbq9ha25dplpf9g62qqa8a46hga"))))
(properties `((upstream-name . "Rhisat2")))
(build-system r-build-system)
(native-inputs
`(("which" ,which)))
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-sgseq" ,r-sgseq)))
(home-page "https://github.com/fmicompbio/Rhisat2")
(synopsis "R Wrapper for HISAT2 sequence aligner")
(description
"This package provides an R interface to the HISAT2 spliced short-read
aligner by Kim et al. (2015). The package contains wrapper functions to
create a genome index and to perform the read alignment to the generated
index.")
(license license:gpl3)))