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gnu: trim-galore: Add pigz.

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* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
This commit is contained in:
Ricardo Wurmus 2019-03-27 11:32:08 +01:00
parent 5f1e31094d
commit 58d8225ddb
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 1 deletions
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gnu/packages/bioinformatics.scm
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@ -10920,7 +10920,11 @@ (define-public trim-galore
(("\"gunzip") (("\"gunzip")
(string-append "\"" (string-append "\""
(assoc-ref inputs "gzip") (assoc-ref inputs "gzip")
"/bin/gunzip"))) "/bin/gunzip"))
(("\"pigz")
(string-append "\""
(assoc-ref inputs "pigz")
"/bin/pigz")))
#t)) #t))
(replace 'install (replace 'install
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key outputs #:allow-other-keys)
@ -10932,6 +10936,7 @@ (define-public trim-galore
(inputs (inputs
`(("gzip" ,gzip) `(("gzip" ,gzip)
("perl" ,perl) ("perl" ,perl)
("pigz" ,pigz)
("cutadapt" ,cutadapt))) ("cutadapt" ,cutadapt)))
(native-inputs (native-inputs
`(("unzip" ,unzip))) `(("unzip" ,unzip)))