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gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
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@ -3848,3 +3848,34 @@ (define-public r-yaqcaffy
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GeneChip expression data and reproducibility analysis of human whole genome
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GeneChip expression data and reproducibility analysis of human whole genome
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chips with the MAQC reference datasets.")
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chips with the MAQC reference datasets.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-quantro
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(package
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(name "r-quantro")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "quantro" version))
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(sha256
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(base32
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"1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-ggplot2" ,r-ggplot2)
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("r-iterators" ,r-iterators)
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("r-minfi" ,r-minfi)
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("r-rcolorbrewer" ,r-rcolorbrewer)))
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(home-page "https://bioconductor.org/packages/quantro/")
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(synopsis "Test for when to use quantile normalization")
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(description
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"This package provides a data-driven test for the assumptions of quantile
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normalization using raw data such as objects that inherit eSets (e.g.
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ExpressionSet, MethylSet). Group level information about each sample (such as
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Tumor / Normal status) must also be provided because the test assesses if
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there are global differences in the distributions between the user-defined
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groups.")
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(license license:gpl3+)))
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