gnu: Add r-quantro.

* gnu/packages/bioconductor.scm (r-quantro): New variable.
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Ricardo Wurmus 2019-03-29 22:30:39 +01:00
parent 8d1990d495
commit 59cf26292f
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@ -3848,3 +3848,34 @@ (define-public r-yaqcaffy
GeneChip expression data and reproducibility analysis of human whole genome GeneChip expression data and reproducibility analysis of human whole genome
chips with the MAQC reference datasets.") chips with the MAQC reference datasets.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-quantro
(package
(name "r-quantro")
(version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "quantro" version))
(sha256
(base32
"1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-iterators" ,r-iterators)
("r-minfi" ,r-minfi)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://bioconductor.org/packages/quantro/")
(synopsis "Test for when to use quantile normalization")
(description
"This package provides a data-driven test for the assumptions of quantile
normalization using raw data such as objects that inherit eSets (e.g.
ExpressionSet, MethylSet). Group level information about each sample (such as
Tumor / Normal status) must also be provided because the test assesses if
there are global differences in the distributions between the user-defined
groups.")
(license license:gpl3+)))