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gnu: Add r-abseqr.

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* gnu/packages/bioconductor.scm (r-abseqr): New variable.
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Ricardo Wurmus 2019-03-29 06:35:57 +01:00
parent f084e41e2c
commit 59d331f16a
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1 changed files with 47 additions and 0 deletions
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47
gnu/packages/bioconductor.scm
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@ -29,6 +29,7 @@ (define-module (gnu packages bioconductor)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages graph)
#:use-module (gnu packages haskell)
#:use-module (gnu packages maths)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages statistics)
@ -3112,3 +3113,49 @@ (define-public r-a4
"This package provides a software suite for the automated analysis of
Affymetrix arrays.")
(license license:gpl3)))
(define-public r-abseqr
(package
(name "r-abseqr")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "abseqR" version))
(sha256
(base32
"0w0ngxnilcrxlixsz7ls3zm99gyabxwn7w1r3r45n96d4aj075ry"))))
(properties `((upstream-name . "abseqR")))
(build-system r-build-system)
(inputs
`(("pandoc" ,ghc-pandoc)))
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-biocstyle" ,r-biocstyle)
("r-circlize" ,r-circlize)
("r-flexdashboard" ,r-flexdashboard)
("r-ggcorrplot" ,r-ggcorrplot)
("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-knitr" ,r-knitr)
("r-plotly" ,r-plotly)
("r-plyr" ,r-plyr)
("r-png" ,r-png)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-reshape2" ,r-reshape2)
("r-rmarkdown" ,r-rmarkdown)
("r-stringr" ,r-stringr)
("r-vegan" ,r-vegan)
("r-venndiagram" ,r-venndiagram)))
(home-page "https://github.com/malhamdoosh/abseqR")
(synopsis "Reporting and data analysis for Rep-Seq datasets of antibody libraries")
(description
"AbSeq is a comprehensive bioinformatic pipeline for the analysis of
sequencing datasets generated from antibody libraries and abseqR is one of its
packages. AbseqR empowers the users of abseqPy with plotting and reporting
capabilities and allows them to generate interactive HTML reports for the
convenience of viewing and sharing with other researchers. Additionally,
abseqR extends abseqPy to compare multiple repertoire analyses and perform
further downstream analysis on its output.")
(license license:gpl3)))