diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 656bb1a9c0..bab399a9e9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7363,6 +7363,39 @@ (define-public r-hpar the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-raggedexperiment + (package + (name "r-raggedexperiment") + (version "1.24.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "RaggedExperiment" version)) + (sha256 + (base32 + "1xs7dz5mkh9zs078g2a0izij8vxrwhzh7gyjglp057gicsca0hal")))) + (properties `((upstream-name . "RaggedExperiment"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-genomeinfodb + r-genomicranges + r-iranges + r-matrix + r-matrixgenerics + r-s4vectors + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/RaggedExperiment") + (synopsis "Representation of sparse experiments and assays across samples") + (description + "This package provides a flexible representation of copy number, +mutation, and other data that fit into the ragged array schema for genomic +location data. The basic representation of such data provides a rectangular +flat table interface to the user with range information in the rows and +samples/specimen in the columns. The @code{RaggedExperiment} class derives +from a @code{GRangesList} representation and provides a semblance of a +rectangular dataset.") + (license license:artistic2.0))) + (define-public r-rhtslib (package (name "r-rhtslib")