mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-26 20:49:29 -05:00
gnu: Add r-epidish.
* gnu/packages/bioconductor.scm (r-epidish): New variable. Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
This commit is contained in:
parent
f1bf43cdff
commit
5b030de386
1 changed files with 31 additions and 0 deletions
|
@ -7462,6 +7462,37 @@ (define-public r-ensembldb
|
|||
;; No version specified
|
||||
(license license:lgpl3+)))
|
||||
|
||||
(define-public r-epidish
|
||||
(package
|
||||
(name "r-epidish")
|
||||
(version "2.18.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "EpiDISH" version))
|
||||
(sha256
|
||||
(base32 "170ym3y6gd1kxghz2g5ynvgi1wrxx87b568cjcvzidpqkrkg87s6"))))
|
||||
(properties `((upstream-name . "EpiDISH")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs (list r-e1071
|
||||
r-locfdr
|
||||
r-mass
|
||||
r-matrix
|
||||
r-matrixstats
|
||||
r-quadprog
|
||||
r-stringr))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://github.com/sjczheng/EpiDISH")
|
||||
(synopsis "Epigenetic dissection of intra-sample-heterogeneity")
|
||||
(description
|
||||
"@code{EpiDISH} is a R package to infer the proportions of a priori known
|
||||
cell-types present in a sample representing a mixture of such cell-types.
|
||||
Right now, the package can be used on DNAm data of whole blood, generic
|
||||
epithelial tissue and breast tissue. Besides, the package provides a function
|
||||
that allows the identification of differentially methylated cell-types and
|
||||
their directionality of change in Epigenome-Wide Association Studies.")
|
||||
(license license:gpl2)))
|
||||
|
||||
(define-public r-fastseg
|
||||
(package
|
||||
(name "r-fastseg")
|
||||
|
|
Loading…
Reference in a new issue