gnu: Add r-epidish.

* gnu/packages/bioconductor.scm (r-epidish): New variable.

Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
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Ricardo Wurmus 2024-01-02 19:22:13 +01:00
parent f1bf43cdff
commit 5b030de386
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@ -7462,6 +7462,37 @@ (define-public r-ensembldb
;; No version specified
(license license:lgpl3+)))
(define-public r-epidish
(package
(name "r-epidish")
(version "2.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "EpiDISH" version))
(sha256
(base32 "170ym3y6gd1kxghz2g5ynvgi1wrxx87b568cjcvzidpqkrkg87s6"))))
(properties `((upstream-name . "EpiDISH")))
(build-system r-build-system)
(propagated-inputs (list r-e1071
r-locfdr
r-mass
r-matrix
r-matrixstats
r-quadprog
r-stringr))
(native-inputs (list r-knitr))
(home-page "https://github.com/sjczheng/EpiDISH")
(synopsis "Epigenetic dissection of intra-sample-heterogeneity")
(description
"@code{EpiDISH} is a R package to infer the proportions of a priori known
cell-types present in a sample representing a mixture of such cell-types.
Right now, the package can be used on DNAm data of whole blood, generic
epithelial tissue and breast tissue. Besides, the package provides a function
that allows the identification of differentially methylated cell-types and
their directionality of change in Epigenome-Wide Association Studies.")
(license license:gpl2)))
(define-public r-fastseg
(package
(name "r-fastseg")