mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-13 06:36:37 -05:00
gnu: Add python-goatools.
* gnu/packages/bioinformatics.scm (python-goatools): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
parent
040cf2df74
commit
5daf470e4f
1 changed files with 42 additions and 0 deletions
|
@ -12337,6 +12337,48 @@ (define-public python-genomic-regions
|
|||
using the same syntax.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-goatools
|
||||
(package
|
||||
(name "python-goatools")
|
||||
(version "1.3.1")
|
||||
;; Pypi tarball doesn't include test files.
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/tanghaibao/goatools")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"0a295zk9jc8kny5vnka63q3gbksins42kcmgvskf8xy7hkca7cmq"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; Almost all tests require access to the internet.
|
||||
#:tests? #false
|
||||
#:test-flags
|
||||
;; These have syntax errors.
|
||||
'(list "--ignore=tests/test_i195_sgd_gaf.py"
|
||||
"--ignore=tests/test_i206.py"
|
||||
"--ignore=tests/test_setup_dirs.py")))
|
||||
(propagated-inputs (list python-docopt
|
||||
python-numpy
|
||||
python-openpyxl
|
||||
python-pandas
|
||||
python-pydot
|
||||
python-requests
|
||||
python-scipy
|
||||
python-statsmodels
|
||||
python-xlsxwriter))
|
||||
(native-inputs (list python-pytest))
|
||||
(home-page "https://github.com/tanghaibao/goatools")
|
||||
(synopsis "Python scripts to find enrichment of GO terms")
|
||||
(description "Python scripts to find enrichment of GO terms. In addition,
|
||||
this package is used for processing the obo-formatted file from Gene Ontology
|
||||
website. The data structure is a directed acyclic graph that allows easy
|
||||
traversal from leaf to root.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-loompy
|
||||
(package
|
||||
(name "python-loompy")
|
||||
|
|
Loading…
Reference in a new issue