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gnu: Add r-methylumi.

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* gnu/packages/bioconductor.scm (r-methylumi): New variable.
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Ricardo Wurmus 2019-03-13 13:35:33 +01:00
parent 0f5c9cec50
commit 5ec5ba0272
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gnu/packages/bioconductor.scm
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@ -2315,3 +2315,47 @@ (define-public r-minfi
"This package provides tools to analyze and visualize Illumina Infinium
methylation arrays.")
(license license:artistic2.0)))
(define-public r-methylumi
(package
(name "r-methylumi")
(version "2.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "methylumi" version))
(sha256
(base32
"14p2qi18cprfvb2gxng1vm48c7zwh23h88q9qjgipj9xl5axsgw2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-fdb-infiniummethylation-hg19" ,r-fdb-infiniummethylation-hg19)
("r-genefilter" ,r-genefilter)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-illuminaio" ,r-illuminaio)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-matrixstats" ,r-matrixstats)
("r-minfi" ,r-minfi)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/methylumi")
(synopsis "Handle Illumina methylation data")
(description
"This package provides classes for holding and manipulating Illumina
methylation data. Based on eSet, it can contain MIAME information, sample
information, feature information, and multiple matrices of data. An
\"intelligent\" import function, methylumiR can read the Illumina text files
and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from
HumanMethylation27 and HumanMethylation450 microarrays. Normalization,
background correction, and quality control features for GoldenGate, Infinium,
and Infinium HD arrays are also included.")
(license license:gpl2)))