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gnu: trim-galore: Fix test for Python.

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* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
This commit is contained in:
Ricardo Wurmus 2019-03-27 11:28:38 +01:00
parent 2a509880d4
commit 5f1e31094d
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1 changed files with 9 additions and 1 deletions
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gnu/packages/bioinformatics.scm
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@ -10896,7 +10896,15 @@ (define-public trim-galore
`(#:tests? #f ; no tests `(#:tests? #f ; no tests
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(delete 'configure) (replace 'configure
(lambda _
;; Trim Galore tries to figure out what version of Python
;; cutadapt is using by looking at the shebang. Of course that
;; doesn't work, because cutadapt is wrapped in a shell script.
(substitute* "trim_galore"
(("my \\$python_return.*")
"my $python_return = \"Python 3.999\";\n"))
#t))
(delete 'build) (delete 'build)
(add-after 'unpack 'hardcode-tool-references (add-after 'unpack 'hardcode-tool-references
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)