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gnu: python-rpy2: Move to (gnu packages statistics).

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* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-01-07 15:41:18 +01:00
parent e0d3f4bf1a
commit 61f2587db9
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GPG key ID: 197A5888235FACAC
2 changed files with 58 additions and 59 deletions
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59
gnu/packages/python.scm
View file

@ -120,7 +120,6 @@ (define-module (gnu packages python)
#:use-module (gnu packages search)
#:use-module (gnu packages shells)
#:use-module (gnu packages ssh)
#:use-module (gnu packages statistics)
#:use-module (gnu packages terminals)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@ -3731,64 +3730,6 @@ (define-public python2-pysnptools
operators such as union, intersection, and difference.")
(license license:asl2.0)))
(define-public python-rpy2
(package
(name "python-rpy2")
(version "2.9.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rpy2" version))
(sha256
(base32
"0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
(build-system python-build-system)
(arguments
'(#:modules ((ice-9 ftw)
(srfi srfi-1)
(srfi srfi-26)
(guix build utils)
(guix build python-build-system))
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(let ((cwd (getcwd)))
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH"))))
(invoke "python" "-m" "rpy2.tests" "-v"))))))
(propagated-inputs
`(("python-six" ,python-six)
("python-jinja2" ,python-jinja2)
("python-pytz" ,python-pytz)))
(inputs
`(("readline" ,readline)
("icu4c" ,icu4c)
("pcre" ,pcre)
("r-minimal" ,r-minimal)
("r-survival" ,r-survival)
("r-ggplot2" ,r-ggplot2)
("r-rsqlite" ,r-rsqlite)
("r-dplyr" ,r-dplyr)
("r-dbplyr" ,r-dbplyr)
("python-numpy" ,python-numpy)))
(native-inputs
`(("zlib" ,zlib)))
(home-page "https://rpy2.bitbucket.io/")
(synopsis "Python interface to the R language")
(description "rpy2 is a redesign and rewrite of rpy. It is providing a
low-level interface to R from Python, a proposed high-level interface,
including wrappers to graphical libraries, as well as R-like structures and
functions.")
;; Any of these licenses can be picked for the R interface. The whole
;; project is released under GPLv2+ according to the license declaration
;; in "setup.py".
(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
(define-public python-scipy
(package
(name "python-scipy")

58
gnu/packages/statistics.scm
View file

@ -5711,6 +5711,64 @@ (define-public r-txtplot
as a boxplot function.")
(license license:lgpl3+)))
(define-public python-rpy2
(package
(name "python-rpy2")
(version "2.9.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rpy2" version))
(sha256
(base32
"0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
(build-system python-build-system)
(arguments
'(#:modules ((ice-9 ftw)
(srfi srfi-1)
(srfi srfi-26)
(guix build utils)
(guix build python-build-system))
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(let ((cwd (getcwd)))
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH"))))
(invoke "python" "-m" "rpy2.tests" "-v"))))))
(propagated-inputs
`(("python-six" ,python-six)
("python-jinja2" ,python-jinja2)
("python-pytz" ,python-pytz)))
(inputs
`(("readline" ,readline)
("icu4c" ,icu4c)
("pcre" ,pcre)
("r-minimal" ,r-minimal)
("r-survival" ,r-survival)
("r-ggplot2" ,r-ggplot2)
("r-rsqlite" ,r-rsqlite)
("r-dplyr" ,r-dplyr)
("r-dbplyr" ,r-dbplyr)
("python-numpy" ,python-numpy)))
(native-inputs
`(("zlib" ,zlib)))
(home-page "https://rpy2.bitbucket.io/")
(synopsis "Python interface to the R language")
(description "rpy2 is a redesign and rewrite of rpy. It is providing a
low-level interface to R from Python, a proposed high-level interface,
including wrappers to graphical libraries, as well as R-like structures and
functions.")
;; Any of these licenses can be picked for the R interface. The whole
;; project is released under GPLv2+ according to the license declaration
;; in "setup.py".
(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
(define-public java-jdistlib
(package
(name "java-jdistlib")