gnu: bpp-seq: Update to 2.4.1.

* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
This commit is contained in:
Mădălin Ionel Patrașcu 2023-04-21 10:16:37 +02:00 committed by Ricardo Wurmus
parent 51ef858c94
commit 627049872b
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@ -2308,37 +2308,27 @@ (define-public bpp-popgen
(license license:cecill-c))))
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
(package
(name "bpp-seq")
(version (string-append "2.2.0-1." (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-seq")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f
;; If out-of-source, test data is not copied into the build directory
;; so the tests fail.
#:out-of-source? #f))
(inputs
(list bpp-core))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ sequence library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
(package
(name "bpp-seq")
(version "2.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BioPP/bpp-seq")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1mc09g8jswzsa4wgrfv59jxn15ys3q8s0227p1j838wkphlwn2qk"))))
(build-system cmake-build-system)
(inputs
(list bpp-core))
(home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-seq/html/")
(synopsis "Bio++ sequence library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This
library provides sequence-related modules.")
(license license:cecill-c))))
(license license:cecill-c)))
(define-public bppsuite
;; The last release was in 2014 and the recommended way to install from source