gnu: macs: Update to 2.2.6.

* gnu/packages/bioinformatics.scm (macs): Update to 2.2.6.
[source]: Fetch from git.
[arguments]: Enable tests, build with default Python.
[inputs]: Replace python2-numpy with python-numpy.
[native-inputs]: Add python-pytest.
This commit is contained in:
Ricardo Wurmus 2020-02-26 12:51:57 +01:00
parent 0e9fc3d61f
commit 640d910427
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@ -4274,19 +4274,30 @@ (define-public kaiju
(define-public macs
(package
(name "macs")
(version "2.1.1.20160309")
(version "2.2.6")
(source (origin
(method url-fetch)
(uri (pypi-uri "MACS2" version))
;; The PyPi tarball does not contain tests.
(method git-fetch)
(uri (git-reference
(url "https://github.com/taoliu/MACS.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"09ixspd1vcqmz1c81ih70xs4m7qml2iy5vyx1y74zww3iy1vl210"))))
"1c5gxr0mk6hkd4vclf0k00wvyvzw2vrmk52c85338p7aqjwg6n15"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; only compatible with Python 2.7
#:tests? #f)) ; no test target
`(#:phases
(modify-phases %standard-phases
(delete 'check)
(add-after 'install 'check
(lambda* (#:key inputs outputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
(invoke "pytest" "-v"))))))
(inputs
`(("python-numpy" ,python2-numpy)))
`(("python-numpy" ,python-numpy)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://github.com/taoliu/MACS/")
(synopsis "Model based analysis for ChIP-Seq data")
(description