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gnu: macs: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.6. [source]: Fetch from git. [arguments]: Enable tests, build with default Python. [inputs]: Replace python2-numpy with python-numpy. [native-inputs]: Add python-pytest.
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1 changed files with 18 additions and 7 deletions
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@ -4274,19 +4274,30 @@ (define-public kaiju
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(define-public macs
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(package
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(name "macs")
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(version "2.1.1.20160309")
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(version "2.2.6")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "MACS2" version))
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;; The PyPi tarball does not contain tests.
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/taoliu/MACS.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"09ixspd1vcqmz1c81ih70xs4m7qml2iy5vyx1y74zww3iy1vl210"))))
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"1c5gxr0mk6hkd4vclf0k00wvyvzw2vrmk52c85338p7aqjwg6n15"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; only compatible with Python 2.7
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#:tests? #f)) ; no test target
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`(#:phases
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(modify-phases %standard-phases
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(delete 'check)
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(add-after 'install 'check
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(add-installed-pythonpath inputs outputs)
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(invoke "pytest" "-v"))))))
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(inputs
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`(("python-numpy" ,python2-numpy)))
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`(("python-numpy" ,python-numpy)))
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(home-page "https://github.com/taoliu/MACS/")
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(synopsis "Model based analysis for ChIP-Seq data")
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(description
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