mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-16 03:45:24 -05:00
gnu: Add r-copykat.
* gnu/packages/bioinformatics.scm (r-copykat): New variable.
This commit is contained in:
parent
b96c0b051d
commit
6413d0898b
1 changed files with 38 additions and 0 deletions
|
@ -9138,6 +9138,44 @@ (define-public r-cellchat
|
|||
communication networks from scRNA-seq data.")
|
||||
(license license:gpl3))))
|
||||
|
||||
(define-public r-copykat
|
||||
(let ((commit ;no tag
|
||||
"256de33dfc1b80a1a0ac9e098c5557f95a4e0d53")
|
||||
(revision "0"))
|
||||
(package
|
||||
(name "r-copykat")
|
||||
(version (git-version "1.0.8" revision commit))
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/navinlabcode/copykat")
|
||||
(commit commit)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"0ckyqnial3imcqlgd6xfgwk5w977l1i87sx4kdbwdvg40w0vh1j8"))))
|
||||
(properties `((upstream-name . "copykat")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
(list r-cluster
|
||||
r-dlm
|
||||
r-gplots
|
||||
r-mcmcpack
|
||||
r-mixtools
|
||||
r-paralleldist
|
||||
r-rcolorbrewer))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://github.com/navinlabcode/copykat")
|
||||
(synopsis "Inference of genomic copy number from single cell RNAseq data")
|
||||
(description
|
||||
"This package Copynumber KAryotyping of Tumors infers genomic copy
|
||||
number and subclonal structure of human tumors using integrative Bayesian
|
||||
approaches to identify genome-wide aneuploidy at 5MB resolution in single
|
||||
cells data. It separates tumor cells and tumor subclones from normal cells
|
||||
using high-throughput sc-RNAseq data.")
|
||||
(license license:gpl2))))
|
||||
|
||||
(define-public sambamba
|
||||
(package
|
||||
(name "sambamba")
|
||||
|
|
Loading…
Reference in a new issue