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import cran: Add "recursive" option.

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* guix/scripts/import/cran.scm: (%options): Add "recursive" option.
(guix-import-cran): Handle "recursive" option.
* doc/guix.texi (Invoking guix import): Document it.
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Ricardo Wurmus 2016-05-17 16:41:13 +02:00 committed by Ricardo Wurmus
parent 94e907b962
commit 64ce53eb5e
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2 changed files with 24 additions and 6 deletions
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4
doc/guix.texi
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@ -5148,6 +5148,10 @@ R package:
guix import cran Cairo
@end example
When @code{--recursive} is added, the importer will traverse the
dependency graph of the given upstream package recursively and generate
package expressions for all those packages that are not yet in Guix.
When @code{--archive=bioconductor} is added, metadata is imported from
@uref{http://www.bioconductor.org/, Bioconductor}, a repository of R
packages for for the analysis and comprehension of high-throughput

26
guix/scripts/import/cran.scm
View file

@ -26,6 +26,7 @@ (define-module (guix scripts import cran)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-11)
#:use-module (srfi srfi-37)
#:use-module (srfi srfi-41)
#:use-module (ice-9 match)
#:use-module (ice-9 format)
#:export (guix-import-cran))
@ -63,6 +64,9 @@ (define %options
(lambda (opt name arg result)
(alist-cons 'repo (string->symbol arg)
(alist-delete 'repo result))))
(option '(#\r "recursive") #f #f
(lambda (opt name arg result)
(alist-cons 'recursive #t result)))
%standard-import-options))
@ -88,12 +92,22 @@ (define (parse-options)
(reverse opts))))
(match args
((package-name)
(let ((sexp (cran->guix-package package-name
(or (assoc-ref opts 'repo) 'cran))))
(unless sexp
(leave (_ "failed to download description for package '~a'~%")
package-name))
sexp))
(if (assoc-ref opts 'recursive)
;; Recursive import
(map (match-lambda
((and ('package ('name name) . rest) pkg)
`(define-public ,(string->symbol name)
,pkg))
(_ #f))
(stream->list (recursive-import package-name
(or (assoc-ref opts 'repo) 'cran))))
;; Single import
(let ((sexp (cran->guix-package package-name
(or (assoc-ref opts 'repo) 'cran))))
(unless sexp
(leave (_ "failed to download description for package '~a'~%")
package-name))
sexp)))
(()
(leave (_ "too few arguments~%")))
((many ...)