gnu: Add r-abadata.

* gnu/packages/bioconductor.scm (r-abadata): New variable.
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Ricardo Wurmus 2019-03-29 17:43:40 +01:00
parent 1fab2cf811
commit 692bce1595
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@ -738,6 +738,43 @@ (define-public r-do-db
;;; Experiment data
(define-public r-abadata
(package
(name "r-abadata")
(version "1.12.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/experiment/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/experiment/src/contrib/"
"ABAData_" version ".tar.gz"))
(sha256
(base32
"1bmj341xcymlrk02gss5vvrqc4ddas0rdw39lnpsj98hq6n11p5z"))))
(properties
`((upstream-name . "ABAData")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/ABAData/")
(synopsis "Gene expression in human brain regions from Allen Brain Atlas")
(description
"This package provides the data for the gene expression enrichment
analysis conducted in the package ABAEnrichment. The package includes three
datasets which are derived from the Allen Brain Atlas:
@enumerate
@item Gene expression data from Human Brain (adults) averaged across donors,
@item Gene expression data from the Developing Human Brain pooled into five
age categories and averaged across donors, and
@item a developmental effect score based on the Developing Human Brain
expression data.
@end enumerate
All datasets are restricted to protein coding genes.")
(license license:gpl2+)))
(define-public r-hsmmsinglecell
(package
(name "r-hsmmsinglecell")