mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-24 21:38:07 -05:00
gnu: Add python-pybigwig.
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig): New variables.
This commit is contained in:
parent
d454640c38
commit
69e0e03c36
1 changed files with 41 additions and 0 deletions
|
@ -1194,6 +1194,47 @@ (define-public libbigwig
|
|||
files.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pybigwig
|
||||
(package
|
||||
(name "python-pybigwig")
|
||||
(version "0.2.5")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyBigWig" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0yrpdxg3y0sny25x4w22lv1k47jzccqjmg7j4bp0hywklvp0hg7d"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
'(begin
|
||||
;; Delete bundled libBigWig sources
|
||||
(delete-file-recursively "libBigWig")))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'link-with-libBigWig
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
(substitute* "setup.py"
|
||||
(("libs=\\[") "libs=[\"BigWig\", "))
|
||||
#t)))))
|
||||
(inputs
|
||||
`(("libbigwig" ,libbigwig)
|
||||
("zlib" ,zlib)
|
||||
("curl" ,curl)))
|
||||
(home-page "https://github.com/dpryan79/pyBigWig")
|
||||
(synopsis "Access bigWig files in Python using libBigWig")
|
||||
(description
|
||||
"This package provides Python bindings to the libBigWig library for
|
||||
accessing bigWig files.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python2-pybigwig
|
||||
(let ((pybigwig (package-with-python2 python-pybigwig)))
|
||||
(package (inherit pybigwig)
|
||||
(native-inputs
|
||||
`(("python-setuptools" ,python2-setuptools))))))
|
||||
|
||||
(define-public deeptools
|
||||
(package
|
||||
(name "deeptools")
|
||||
|
|
Loading…
Reference in a new issue