gnu: Add python-pybigwig.

* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
  New variables.
This commit is contained in:
Ricardo Wurmus 2016-02-29 14:37:38 +01:00
parent d454640c38
commit 69e0e03c36

View file

@ -1194,6 +1194,47 @@ (define-public libbigwig
files.")
(license license:expat)))
(define-public python-pybigwig
(package
(name "python-pybigwig")
(version "0.2.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "pyBigWig" version))
(sha256
(base32
"0yrpdxg3y0sny25x4w22lv1k47jzccqjmg7j4bp0hywklvp0hg7d"))
(modules '((guix build utils)))
(snippet
'(begin
;; Delete bundled libBigWig sources
(delete-file-recursively "libBigWig")))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'link-with-libBigWig
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "setup.py"
(("libs=\\[") "libs=[\"BigWig\", "))
#t)))))
(inputs
`(("libbigwig" ,libbigwig)
("zlib" ,zlib)
("curl" ,curl)))
(home-page "https://github.com/dpryan79/pyBigWig")
(synopsis "Access bigWig files in Python using libBigWig")
(description
"This package provides Python bindings to the libBigWig library for
accessing bigWig files.")
(license license:expat)))
(define-public python2-pybigwig
(let ((pybigwig (package-with-python2 python-pybigwig)))
(package (inherit pybigwig)
(native-inputs
`(("python-setuptools" ,python2-setuptools))))))
(define-public deeptools
(package
(name "deeptools")