gnu: virtuoso-ose: Update to 7.2.9.

* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.9; Add 'which' for
  the test suite.
* gnu/packages/patches/virtuoso-ose-remove-pre-built-jar-files.patch: Update
  patch for new version.

gnu/packages/databases.scm

@@ -3273,14 +3273,14 @@ (define-public python-lmdb
 (define-public virtuoso-ose
   (package
     (name "virtuoso-ose")
-    (version "7.2.7")
+    (version "7.2.9")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://sourceforge/virtuoso/virtuoso/" version "/"
                            "virtuoso-opensource-" version ".tar.gz"))
        (sha256
-        (base32 "1853ln0smiilf3pni70gq6nmi9ps039cy44g6b5i9d2z1n9hnj02"))
+        (base32 "145s4lqixdxa3j0lp9lgzbb664zzy1imw04hmgia5y5679i8r0xy"))
        (patches (search-patches "virtuoso-ose-remove-pre-built-jar-files.patch"))
        (modules '((guix build utils)))
        ;; This snippet removes pre-built Java archives.
@@ -3353,7 +3353,7 @@ (define-public virtuoso-ose
     (native-inputs
      (list autoconf automake bison flex gperf libtool))
     (inputs
-     (list openssl net-tools readline zlib))
+     (list openssl net-tools readline which zlib))
     (home-page "https://vos.openlinksw.com/owiki/wiki/VOS/")
     (synopsis "Multi-model database system")
     (description "Virtuoso is a scalable cross-platform server that combines

gnu/packages/patches/virtuoso-ose-remove-pre-built-jar-files.patch

@@ -2,14 +2,14 @@ This patch disables build targets that contain pre-built Java archives that
 would be copied to the build's output.
 
 Patch by Roel Janssen <roel@gnu.org>
-*** a-virtuoso-opensource-7.2.7/binsrc/Makefile.am	1970-01-01 01:00:01.000000000 +0100
+*** a-virtuoso-opensource-7.2.9/binsrc/Makefile.am	1970-01-01 01:00:01.000000000 +0100
---- b-virtuoso-opensource-7.2.7/binsrc/Makefile.am	2022-05-27 12:20:52.909135774 +0200
+--- b-virtuoso-opensource-7.2.9/binsrc/Makefile.am	2023-03-05 13:05:37.946449855 +0100
 ***************
 *** 19,25 ****
   #  
   #  
   
-! SUBDIRS = dav mono virtuoso tests rdf_mappers driver maildrop sqldoc hosting bpel fct tutorial conductor samples vsp ws sync vspx vad cached_resources virtodbc virtoledb virtuoso_sink xddl VirtuosoClient.Net oat isparql jena jena2 jena3 jena4 sesame sesame2 sesame3 sesame4 redland hibernate dbpedia rdb2rdf rdf4j
+! SUBDIRS = dav mono virtuoso tests rdf_mappers driver maildrop sqldoc hosting graphql bpel fct tutorial conductor samples vsp ws sync vspx vad cached_resources virtodbc virtoledb virtuoso_sink xddl VirtuosoClient.Net oat isparql jena jena2 jena3 jena4 sesame sesame2 sesame3 sesame4 redland hibernate dbpedia rdb2rdf rdf4j rdf4j_4 websocket
   
   
   # ----------------------------------------------------------------------
@@ -17,42 +17,41 @@ Patch by Roel Janssen <roel@gnu.org>
   #  
   #  
   
-! SUBDIRS = dav mono virtuoso tests rdf_mappers driver maildrop sqldoc hosting bpel fct tutorial conductor samples vsp ws sync vspx vad cached_resources virtodbc virtoledb virtuoso_sink xddl VirtuosoClient.Net oat isparql redland dbpedia rdb2rdf
+! SUBDIRS = dav mono virtuoso tests rdf_mappers driver maildrop sqldoc hosting graphql bpel fct tutorial conductor samples vsp ws sync vspx vad cached_resources virtodbc virtoledb virtuoso_sink xddl VirtuosoClient.Net oat isparql redland dbpedia rdb2rdf websocket
   
   
   # ----------------------------------------------------------------------
-*** a-virtuoso-opensource-7.2.7/configure.ac	1970-01-01 01:00:01.000000000 +0100
+*** a-virtuoso-opensource-7.2.9/configure.ac	1970-01-01 01:00:01.000000000 +0100
---- b-virtuoso-opensource-7.2.7/configure.ac	2022-05-27 12:27:51.879208018 +0200
+--- b-virtuoso-opensource-7.2.9/configure.ac	2023-03-05 13:03:01.302629421 +0100
 ***************
-*** 57,64 ****
+*** 57,63 ****
   dnl	AM_INIT_AUTOMAKE([1.8])
   dnl	AM_INIT_AUTOMAKE([1.9 tar-ustar])
   dnl
 ! AM_INIT_AUTOMAKE([1.9 tar-ustar])
-! 
-  AM_MAINTAINER_MODE
   
+  AM_MAINTAINER_MODE
   
 --- 57,63 ----
   dnl	AM_INIT_AUTOMAKE([1.8])
   dnl	AM_INIT_AUTOMAKE([1.9 tar-ustar])
   dnl
 ! AM_INIT_AUTOMAKE([1.9 tar-ustar subdir-objects])
+  
   AM_MAINTAINER_MODE
   
-  
 ***************
-*** 3157,3163 ****
+*** 3210,3216 ****
-  	binsrc/dbpedia/Makefile
   	binsrc/driver/Makefile
   	binsrc/fct/Makefile
+  	binsrc/graphql/Makefile
 - 	binsrc/hibernate/Makefile
   	binsrc/hosting/Makefile
   	binsrc/hosting/mono/Makefile
   	binsrc/hosting/mono/tests/Makefile
---- 3156,3161 ----
+--- 3210,3215 ----
 ***************
-*** 3169,3184 ****
+*** 3222,3238 ****
   	binsrc/hosting/ruby/Makefile
   	binsrc/hosting/shapefileio/Makefile
   	binsrc/isparql/Makefile
@@ -66,12 +65,13 @@ Patch by Roel Janssen <roel@gnu.org>
   	binsrc/rdf_mappers/Makefile
   	binsrc/rdb2rdf/Makefile
 - 	binsrc/rdf4j/Makefile
+- 	binsrc/rdf4j_4/Makefile
   	binsrc/redland/Makefile
   	binsrc/samples/demo/Makefile
   	binsrc/samples/hslookup/Makefile
---- 3167,3177 ----
+--- 3221,3231 ----
 ***************
-*** 3191,3200 ****
+*** 3245,3254 ****
   	binsrc/samples/webapp/Makefile
   	binsrc/samples/xpath/Makefile
   	binsrc/samples/xquery/Makefile
@@ -82,9 +82,9 @@ Patch by Roel Janssen <roel@gnu.org>
   	binsrc/sqldoc/Makefile
   	binsrc/sync/Makefile
   	binsrc/tests/biftest/Makefile
---- 3184,3189 ----
+--- 3238,3243 ----
 ***************
-*** 3236,3245 ****
+*** 3291,3300 ****
   	docsrc/stylesheets/Makefile
   	docsrc/xmlsource/Makefile
   	libsrc/Dk/Makefile
@@ -95,9 +95,9 @@ Patch by Roel Janssen <roel@gnu.org>
   	libsrc/langfunc/Makefile
   	libsrc/odbcsdk/Makefile
   	libsrc/plugin/Makefile
---- 3225,3230 ----
+--- 3280,3285 ----
-*** a-virtuoso-opensource-7.2.7/libsrc/Makefile.am	1970-01-01 01:00:01.000000000 +0100
+*** a-virtuoso-opensource-7.2.9/libsrc/Makefile.am	1970-01-01 01:00:01.000000000 +0100
---- b-virtuoso-opensource-7.2.7/libsrc/Makefile.am	2022-05-27 12:30:12.658593011 +0200
+--- b-virtuoso-opensource-7.2.9/libsrc/Makefile.am	2023-03-05 13:03:17.616027294 +0100
 ***************
 *** 19,25 ****
   #