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gnu: Add nomad-optimizer.
* gnu/packages/maths.scm (nomad-optimizer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
Paul A. Patience
Ludovic Courtès
parent
aa1b756723
commit
6bd1d4a18b
1 changed files with 148 additions and 0 deletions
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@ -1799,6 +1799,154 @@ (define-public ipopt
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interfaces.")
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(license license:epl2.0)))
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(define-public nomad-optimizer
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(package
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(name "nomad-optimizer")
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(version "4.1.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/bbopt/nomad/")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0w386d8r5ldbvnv0c0g7vz95pfpvwdxis26vaalk2amsa5akl775"))))
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(build-system cmake-build-system)
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(native-inputs
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`(("python" ,python-wrapper)
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("python-cython" ,python-cython)))
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(arguments
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`(#:imported-modules ((guix build python-build-system)
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,@%cmake-build-system-modules)
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#:modules (((guix build python-build-system)
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#:select (python-version site-packages))
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(guix build cmake-build-system)
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(guix build utils))
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#:configure-flags
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'("-DBUILD_INTERFACES=ON"
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"-DBUILD_TESTS=ON")
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-sources-for-build
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(lambda* (#:key outputs #:allow-other-keys)
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(substitute* "CMakeLists.txt"
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;; CMAKE_INSTALL_PREFIX is accidentally hardcoded.
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(("set\\(CMAKE_INSTALL_PREFIX .* FORCE\\)") "")
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;; Requiring GCC version 8 or later is unwarranted.
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(("message\\(FATAL_ERROR \"GCC version < 8")
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"message(STATUS \"GCC version < 8"))
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(let ((out (assoc-ref outputs "out")))
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(substitute* "interfaces/PyNomad/CMakeLists.txt"
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;; We don't want to build in-place, and anyway the install
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;; command further below runs build_ext as a prerequisite.
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(("COMMAND python setup_PyNomad\\.py .* build_ext --inplace\n")
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"")
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;; Don't install locally.
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(("COMMAND python (setup_PyNomad\\.py .* install) --user\n"
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_ args)
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(string-append "COMMAND ${CMAKE_COMMAND} -E env"
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" CC=" ,(cc-for-target)
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" CXX=" ,(cxx-for-target)
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" " (which "python")
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" " args
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" --prefix=" out
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"\n")))
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;; Fix erroneous assumptions about the paths of the include and
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;; library directories.
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(substitute* "interfaces/PyNomad/setup_PyNomad.py"
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(("^( +os_include_dirs = ).*" _ prefix)
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(string-append prefix "[\"../../src\"]\n"))
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(("^(installed_lib_dir = ).*" _ prefix)
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(string-append prefix "\"" out "/lib\"\n"))))
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#t))
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;; Fix the tests so they run in out-of-source builds.
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(add-after 'fix-sources-for-build 'fix-sources-for-tests
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(lambda _
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(substitute*
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(map (lambda (d) (string-append "examples/" d "/CMakeLists.txt"))
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(append
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(map (lambda (d) (string-append "basic/library/" d))
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'("example1" "example2" "example3"
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"single_obj_parallel"))
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(map (lambda (d) (string-append "advanced/library/" d))
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'("FixedVariable" "NMonly" "PSDMads" "Restart"
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"c_api/example1" "c_api/example2"
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"exampleSuggestAndObserve"))))
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;; The built examples are assumed to be in the source tree
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;; (which isn't the case here).
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(("(COMMAND \\$\\{CMAKE_BINARY_DIR\\}/examples/runExampleTest\\.sh )\\.(/.*)"
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_ command test)
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(string-append command "${CMAKE_CURRENT_BINARY_DIR}" test)))
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;; (Unrelated to support for out-of-source testing.)
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(make-file-writable
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"examples/advanced/library/exampleSuggestAndObserve/cache0.txt")
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(let* ((builddir (string-append (getcwd) "/../build"))
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;; The BB_EXE and SURROGATE_EXE paths are interpreted
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;; relative to the configuration file provided to NOMAD.
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;; However, the configuration files are all in the source
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;; tree rather than in the build tree (unlike the compiled
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;; executables).
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(fix-exe-path (lambda* (dir #:optional
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(file "param.txt")
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(exe-opt "BB_EXE"))
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(substitute* (string-append dir "/" file)
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(((string-append "^" exe-opt " +"))
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;; The $ prevents NOMAD from prefixing
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;; the executable with the path of the
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;; parent directory of the configuration
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;; file NOMAD was provided with as
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;; argument (param.txt or some such).
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(string-append exe-opt " $"
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builddir "/" dir "/"))))))
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(for-each
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(lambda (dir)
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(let ((dir (string-append "examples/" dir)))
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(substitute* (string-append dir "/CMakeLists.txt")
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;; The install phase has not yet run.
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(("COMMAND \\$\\{CMAKE_INSTALL_PREFIX\\}/bin/nomad ")
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"COMMAND ${CMAKE_BINARY_DIR}/src/nomad "))
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(fix-exe-path dir)
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(when (equal? dir "examples/basic/batch/surrogate_sort")
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(fix-exe-path dir "param.txt" "SURROGATE_EXE"))))
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(append (map (lambda (d) (string-append "basic/batch/" d))
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'("example1" "example2"
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"single_obj" "single_obj_parallel"
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"surrogate_sort"))
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'("advanced/batch/LHonly")))
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(let ((dir "examples/advanced/batch/FixedVariable"))
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(substitute* (string-append dir "/runFixed.sh")
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;; Hardcoded path to NOMAD executable.
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(("^\\.\\./\\.\\./\\.\\./\\.\\./bin/nomad ")
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(string-append builddir "/src/nomad ")))
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(for-each
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(lambda (f) (fix-exe-path dir f))
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'("param1.txt" "param2.txt" "param3.txt" "param10.txt"))))
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#t))
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;; The information in the .egg-info file is not kept up to date.
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(add-after 'install 'delete-superfluous-egg-info
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(delete-file (string-append
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(site-packages inputs outputs)
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"PyNomad-0.0.0-py"
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(python-version (assoc-ref inputs "python"))
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".egg-info"))
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#t)))))
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(home-page "https://www.gerad.ca/nomad/")
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(synopsis "Nonlinear optimization by mesh-adaptive direct search")
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(description
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"NOMAD is a C++ implementation of the mesh-adaptive direct search (MADS)
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algorithm, designed for difficult blackbox optimization problems. These
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problems occur when the functions defining the objective and constraints are
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the result of costly computer simulations.")
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(license license:lgpl3+)))
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(define-public cbc
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(package
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(name "cbc")
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