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gnu: Add r-biggr.

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* gnu/packages/bioconductor.scm (r-biggr): New variable.
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Ricardo Wurmus 2019-12-17 19:48:13 +01:00
parent 5aef09bd0e
commit 6ca6f8663b
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gnu/packages/bioconductor.scm
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@ -6753,3 +6753,33 @@ (define-public r-hyperdraw
(description
"This package provides functions for visualizing hypergraphs.")
(license license:gpl2+)))
(define-public r-biggr
(package
(name "r-biggr")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiGGR" version))
(sha256
(base32
"1n2ypc84abmhn6br0yi87k7lvjc11k7abzhgvzdabc2ai1qgcqif"))))
(properties `((upstream-name . "BiGGR")))
(build-system r-build-system)
(propagated-inputs
`(("r-hyperdraw" ,r-hyperdraw)
("r-hypergraph" ,r-hypergraph)
("r-lim" ,r-lim)
("r-limsolve" ,r-limsolve)
("r-rsbml" ,r-rsbml)
("r-stringr" ,r-stringr)))
(home-page "https://bioconductor.org/packages/BiGGR/")
(synopsis "Constraint based modeling using metabolic reconstruction databases")
(description
"This package provides an interface to simulate metabolic reconstruction
from the @url{http://bigg.ucsd.edu/, BiGG database} and other metabolic
reconstruction databases. The package facilitates @dfn{flux balance
analysis} (FBA) and the sampling of feasible flux distributions. Metabolic
networks and estimated fluxes can be visualized with hypergraphs.")
(license license:gpl3+)))