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gnu: Add r-biggr.
* gnu/packages/bioconductor.scm (r-biggr): New variable.
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@ -6753,3 +6753,33 @@ (define-public r-hyperdraw
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(description
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(description
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"This package provides functions for visualizing hypergraphs.")
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"This package provides functions for visualizing hypergraphs.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-biggr
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(package
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(name "r-biggr")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BiGGR" version))
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(sha256
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(base32
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"1n2ypc84abmhn6br0yi87k7lvjc11k7abzhgvzdabc2ai1qgcqif"))))
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(properties `((upstream-name . "BiGGR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-hyperdraw" ,r-hyperdraw)
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("r-hypergraph" ,r-hypergraph)
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("r-lim" ,r-lim)
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("r-limsolve" ,r-limsolve)
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("r-rsbml" ,r-rsbml)
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("r-stringr" ,r-stringr)))
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(home-page "https://bioconductor.org/packages/BiGGR/")
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(synopsis "Constraint based modeling using metabolic reconstruction databases")
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(description
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"This package provides an interface to simulate metabolic reconstruction
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from the @url{http://bigg.ucsd.edu/, BiGG database} and other metabolic
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reconstruction databases. The package facilitates @dfn{flux balance
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analysis} (FBA) and the sampling of feasible flux distributions. Metabolic
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networks and estimated fluxes can be visualized with hypergraphs.")
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(license license:gpl3+)))
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