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gnu: r-mutationalpatterns: Update to 3.0.1.

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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
This commit is contained in:
Roel Janssen 2020-11-18 16:06:22 +01:00 committed by Ricardo Wurmus
parent a823a74525
commit 6d5a4dd0a7
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1 changed files with 15 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -8943,33 +8943,40 @@ (define-public rcas-web
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
(version "2.0.0")
(version "3.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
"02lyjiabyhmifycksvpcx29a0pb7z9xjw0hgg8n0sd0dy3afqhcm"))))
"1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
;; These two packages are suggested packages
("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomicranges" ,r-genomicranges)
("r-cowplot" ,r-cowplot)
("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggalluvial" ,r-ggalluvial)
("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-nmf" ,r-nmf)
("r-plyr" ,r-plyr)
("r-pracma" ,r-pracma)
("r-reshape2" ,r-reshape2)
("r-cowplot" ,r-cowplot)
("r-ggdendro" ,r-ggdendro)
("r-purrr" ,r-purrr)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")