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gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.

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* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
  New variable.
This commit is contained in:
Ricardo Wurmus 2016-03-30 12:24:44 +02:00
parent 943bd6279f
commit 6dc6099853
1 changed files with 32 additions and 0 deletions
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32
gnu/packages/bioinformatics.scm
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@ -4863,6 +4863,38 @@ (define-public r-bsgenome-celegans-ucsc-ce6
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Dmelanogaster.UCSC.dm3_"
version ".tar.gz"))
(sha256
(base32
"19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
(properties
`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"http://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
(synopsis "Full genome sequences for Fly")
(description
"This package provides full genome sequences for Drosophila
melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
Biostrings objects.")
(license license:artistic2.0)))
(define-public r-motifrg
(package
(name "r-motifrg")