ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2025-01-01 00:52:55 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add r-greylistchip.

Browse source 
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
This commit is contained in:
Roel Janssen 2020-11-18 16:47:44 +01:00 committed by Ricardo Wurmus
parent c84762c446
commit 6e396c4bff
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 27 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

27
gnu/packages/bioconductor.scm
View file

@ -1657,6 +1657,33 @@ (define-public r-apeglm
posterior for individual coefficients.")
(license license:gpl2)))
(define-public r-greylistchip
(package
(name "r-greylistchip")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GreyListChIP" version))
(sha256
(base32
"1d1yvza1aw3vs3di6mrra5l52ig0p9bpzprrqvknjaz5i4yb8ma6"))))
(properties `((upstream-name . "GreyListChIP")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-mass" ,r-mass)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/GreyListChIP")
(synopsis "Greylist artefact regions based on ChIP inputs")
(description "This package identifies regions of ChIP experiments with high
signal in the input, that lead to spurious peaks during peak calling.")
(license license:artistic2.0)))
(define-public r-diffbind
(package
(name "r-diffbind")