gnu: Add SummarizedExperiment.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
This commit is contained in:
Ricardo Wurmus 2015-12-18 14:08:17 +01:00
parent f8d74f7018
commit 6e76dda2d0

View file

@ -3639,6 +3639,35 @@ (define-public r-rsamtools
files.")
(license license:expat)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")
(version "1.0.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SummarizedExperiment" version))
(sha256
(base32
"0w1dwp99p6i7sc3cn0ir3dr8ksgxwjf16675h5i8n6gbv4rl9lz6"))))
(properties
`((upstream-name . "SummarizedExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "http://bioconductor.org/packages/SummarizedExperiment")
(synopsis "Container for representing genomic ranges by sample")
(description
"The SummarizedExperiment container contains one or more assays, each
represented by a matrix-like object of numeric or other mode. The rows
typically represent genomic ranges of interest and the columns represent
samples.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")