From 7209beb694401a0a180c43e11f1d7efd9807aafc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 21 Jun 2021 17:52:00 +0200 Subject: [PATCH] gnu: Add r-leidenbase. * gnu/packages/bioconductor.scm (r-leidenbase): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fd9d80cbdf..f218fd1285 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6371,6 +6371,40 @@ (define-public r-monocle qPCR data, but could be used with other types as well.") (license license:artistic2.0))) +(define-public r-leidenbase + (let ((commit "430f22af6982cc7d2e6e77f6b0df47bc970dcbce") + (revision "1")) + (package + (name "r-leidenbase") + (version (git-version "0.1.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cole-trapnell-lab/leidenbase") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ylqsmdpv4xq6f6ldxvwkhk33a9i1jcgk60zvksk3iplykfzd6c0")))) + (properties `((upstream-name . "leidenbase"))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("gfortran" ,gfortran))) + (propagated-inputs + `(("r-igraph" ,r-igraph))) + (home-page "https://github.com/cole-trapnell-lab/leidenbase") + (synopsis "R and C wrappers to run the Leiden find_partition function") + (description + "This package provides an R to C interface that runs the Leiden +community detection algorithm to find a basic partition. It runs the +equivalent of the @code{find_partition} function. This package includes the +required source code files from the official Leidenalg distribution and +several functions from the R igraph package.") + (license license:gpl3+)))) + (define-public r-monocle3 (package (name "r-monocle3")