gnu: r-valr: Update to 0.6.4.

* gnu/packages/cran.scm (r-valr): Move from here...
* gnu/packages/bioconductor.scm (r-valr): ...to here.  Update to 0.6.4.
[propagated-inputs]: Add r-rtracklayer.
This commit is contained in:
Ricardo Wurmus 2022-01-05 14:26:14 +01:00
parent d4e0534c4f
commit 734e1b185f
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GPG key ID: 197A5888235FACAC
2 changed files with 33 additions and 31 deletions

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@ -4766,6 +4766,39 @@ (define-public r-tximport
of gene-level counts.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on a Bioconductor package.
(define-public r-valr
(package
(name "r-valr")
(version "0.6.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "valr" version))
(sha256
(base32
"0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k"))))
(build-system r-build-system)
(propagated-inputs
(list r-broom
r-dplyr
r-ggplot2
r-rcpp
r-readr
r-rlang
r-rtracklayer ;bioconductor package
r-stringr
r-tibble))
(native-inputs
(list r-knitr))
(home-page "https://github.com/rnabioco/valr")
(synopsis "Genome interval arithmetic in R")
(description
"This package enables you to read and manipulate genome intervals and
signals. It provides functionality similar to command-line tool suites within
R, enabling interactive analysis and visualization of genome-scale data.")
(license license:expat)))
(define-public r-variantannotation
(package
(name "r-variantannotation")

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@ -15677,37 +15677,6 @@ (define-public r-apcluster
plotting functions are available for analyzing clustering results.")
(license license:gpl2+)))
(define-public r-valr
(package
(name "r-valr")
(version "0.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "valr" version))
(sha256
(base32
"1lzdlw0mw06rymyjzwf4i8rx1z6zxpwxxqfsc9ggqlnhq6bfhy93"))))
(build-system r-build-system)
(propagated-inputs
(list r-broom
r-dplyr
r-ggplot2
r-rcpp
r-readr
r-rlang
r-stringr
r-tibble))
(native-inputs
(list r-knitr))
(home-page "https://github.com/rnabioco/valr")
(synopsis "Genome interval arithmetic in R")
(description
"This package enables you to read and manipulate genome intervals and
signals. It provides functionality similar to command-line tool suites within
R, enabling interactive analysis and visualization of genome-scale data.")
(license license:expat)))
(define-public r-rematch2
(package
(name "r-rematch2")