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gnu: r-rcas: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-rcas): Move from here...
* gnu/packages/bioconductor.scm (r-rcas): ...to here.
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zimoun 2021-05-21 22:26:13 +02:00 committed by Ricardo Wurmus
parent 45b6db4fb4
commit 7360dea624
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2 changed files with 49 additions and 49 deletions
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49
gnu/packages/bioconductor.scm
View file

@ -3512,6 +3512,55 @@ (define-public r-rbgl
the graph algorithms contained in the Boost library.")
(license license:artistic2.0)))
(define-public r-rcas
(package
(name "r-rcas")
(version "1.16.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RCAS" version))
(sha256
(base32
"0vdxml618vqvf8xyh0zxs307p9zby0cj9dqyiiz625ilyq1hkw2m"))))
(properties `((upstream-name . "RCAS")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-cowplot" ,r-cowplot)
("r-data-table" ,r-data-table)
("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggseqlogo" ,r-ggseqlogo)
("r-gprofiler2" ,r-gprofiler2)
("r-iranges" ,r-iranges)
("r-pbapply" ,r-pbapply)
("r-pheatmap" ,r-pheatmap)
("r-plotly" ,r-plotly)
("r-plotrix" ,r-plotrix)
("r-proxy" ,r-proxy)
("r-ranger" ,r-ranger)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-rmarkdown" ,r-rmarkdown)
("r-s4vectors" ,r-s4vectors)
("pandoc" ,pandoc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(synopsis "RNA-centric annotation system")
(description
"RCAS aims to be a standalone RNA-centric annotation system that provides
intuitive reports and publication-ready graphics. This package provides the R
library implementing most of the pipeline's features.")
(home-page "https://github.com/BIMSBbioinfo/RCAS")
(license license:artistic2.0)))
(define-public r-regioner
(package
(name "r-regioner")

49
gnu/packages/bioinformatics.scm
View file

@ -8046,55 +8046,6 @@ (define-public r-r4rna
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
(define-public r-rcas
(package
(name "r-rcas")
(version "1.16.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RCAS" version))
(sha256
(base32
"0vdxml618vqvf8xyh0zxs307p9zby0cj9dqyiiz625ilyq1hkw2m"))))
(properties `((upstream-name . "RCAS")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-cowplot" ,r-cowplot)
("r-data-table" ,r-data-table)
("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggseqlogo" ,r-ggseqlogo)
("r-gprofiler2" ,r-gprofiler2)
("r-iranges" ,r-iranges)
("r-pbapply" ,r-pbapply)
("r-pheatmap" ,r-pheatmap)
("r-plotly" ,r-plotly)
("r-plotrix" ,r-plotrix)
("r-proxy" ,r-proxy)
("r-ranger" ,r-ranger)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-rmarkdown" ,r-rmarkdown)
("r-s4vectors" ,r-s4vectors)
("pandoc" ,pandoc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(synopsis "RNA-centric annotation system")
(description
"RCAS aims to be a standalone RNA-centric annotation system that provides
intuitive reports and publication-ready graphics. This package provides the R
library implementing most of the pipeline's features.")
(home-page "https://github.com/BIMSBbioinfo/RCAS")
(license license:artistic2.0)))
(define-public rcas-web
(package
(name "rcas-web")