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Merge branch 'master' into core-updates

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Ludovic Courtès 2016-07-20 11:42:02 +02:00
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3
.dir-locals.el
View file

@ -41,6 +41,8 @@
(eval . (put 'with-atomic-file-output 'scheme-indent-function 1))
(eval . (put 'call-with-compressed-output-port 'scheme-indent-function 2))
(eval . (put 'call-with-decompressed-port 'scheme-indent-function 2))
(eval . (put 'call-with-gzip-input-port 'scheme-indent-function 1))
(eval . (put 'call-with-gzip-output-port 'scheme-indent-function 1))
(eval . (put 'signature-case 'scheme-indent-function 1))
(eval . (put 'emacs-batch-eval 'scheme-indent-function 0))
(eval . (put 'emacs-batch-edit-file 'scheme-indent-function 1))
@ -59,6 +61,7 @@
(eval . (put 'run-with-store 'scheme-indent-function 1))
(eval . (put 'run-with-state 'scheme-indent-function 1))
(eval . (put 'wrap-program 'scheme-indent-function 1))
(eval . (put 'with-imported-modules 'scheme-indent-function 1))
(eval . (put 'call-with-container 'scheme-indent-function 1))
(eval . (put 'container-excursion 'scheme-indent-function 1))

1
.gitignore vendored
View file

@ -35,6 +35,7 @@
/doc/guix.ky
/doc/guix.pg
/doc/guix.toc
/doc/guix.t2p
/doc/guix.tp
/doc/guix.vr
/doc/guix.vrs

6
.mailmap
View file

@ -30,8 +30,9 @@ Ludovic Courtès <ludo@gnu.org> <ludovic.courtes@inria.fr>
Mathieu Lirzin <mthl@gnu.org> <mthl@openmailbox.org>
Mathieu Lirzin <mthl@gnu.org> <mathieu.lirzin@openmailbox.org>
Nikita Karetnikov <nikita@karetnikov.org> <nikita.karetnikov@gmail.com>
Nils Gillmann <ng0@libertad.pw> <niasterisk@grrlz.net>
Nils Gillmann <ng0@libertad.pw> <ng@niasterisk.space>
ng0 <ng0@we.make.ritual.n0.is> <niasterisk@grrlz.net>
ng0 <ng0@we.make.ritual.n0.is> <ng@niasterisk.space>
ng0 <ng0@we.make.ritual.n0.is> <ng0@libertad.pw>
Pjotr Prins <pjotr.public01@thebird.nl>
Pjotr Prins <pjotr.public01@thebird.nl> <pjotr.public12@thebird.nl>
Raimon Grau <raimonster@gmail.com> <raimon@3scale.net>
@ -41,3 +42,4 @@ Ricardo Wurmus <rekado@elephly.net> <ricardo.wurmus@mdc-berlin.de>
Sou Bunnbu (宋文武) <iyzsong@gmail.com>
Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
Tomáš Čech <sleep_walker@gnu.org> <sleep_walker@suse.cz>
Tobias Geerinckx-Rice <me@tobias.gr> <tobias.geerinckx.rice@gmail.com>

4
HACKING
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@ -35,6 +35,10 @@ upgrading GnuTLS or GLib.) We have a mailing list for commit notifications
(guix-commits@gnu.org), so people can notice. Before pushing your changes,
make sure to run ‘git pull --rebase’.
All commits that are pushed to the central repository on Savannah should be
signed with a PGP key, and the public key should be uploaded to your user
account on Savannah.
For anything else, please post to guix-devel@gnu.org and leave time for a
review, without committing anything. If you didn’t receive any reply
after two weeks, and if you’re confident, it’s OK to commit.

2
Makefile.am
View file

@ -57,6 +57,7 @@ MODULES = \
guix/licenses.scm \
guix/graph.scm \
guix/cve.scm \
guix/zlib.scm \
guix/build-system.scm \
guix/build-system/ant.scm \
guix/build-system/cmake.scm \
@ -252,6 +253,7 @@ SCM_TESTS = \
tests/graph.scm \
tests/challenge.scm \
tests/cve.scm \
tests/zlib.scm \
tests/file-systems.scm \
tests/system.scm \
tests/services.scm \

1
THANKS
View file

@ -14,6 +14,7 @@ infrastructure help:
Alexandru Cojocaru <xojoc@gmx.com>
Aleix Conchillo Flaqué <aconchillo@gmail.com>
Malcolm Cook <MEC@stowers.org>
Thomas Danckaert <thomas.danckaert@gmail.com>
Rafael Ferreira <rafael.f.f1@gmail.com>
Christian Grothoff <christian@grothoff.org>
Eric Hanchrow <eric.hanchrow@gmail.com>

4
config-daemon.ac
View file

@ -113,10 +113,10 @@ if test "x$guix_build_daemon" = "xyes"; then
dnl Determine the appropriate default list of substitute URLs.
GUILE_MODULE_AVAILABLE([have_gnutls], [(gnutls)])
if test "x$have_gnutls" = "xyes"; then
guix_substitute_urls="https://mirror.hydra.gnu.org https://hydra.gnu.org"
guix_substitute_urls="https://mirror.hydra.gnu.org"
else
AC_MSG_WARN([GnuTLS is missing, substitutes will be downloaded in the clear])
guix_substitute_urls="http://mirror.hydra.gnu.org http://hydra.gnu.org"
guix_substitute_urls="http://mirror.hydra.gnu.org"
fi
AC_MSG_CHECKING([for default substitute URLs])
AC_MSG_RESULT([$guix_substitute_urls])

11
configure.ac
View file

@ -189,6 +189,17 @@ AC_SUBST([LIBGCRYPT_LIBDIR])
GUIX_ASSERT_LIBGCRYPT_USABLE
dnl Library name of zlib suitable for 'dynamic-link'.
GUIX_LIBZ_LIBDIR([libz_libdir])
if test "x$libz_libdir" = "x"; then
LIBZ="libz"
else
LIBZ="$libz_libdir/libz"
fi
AC_MSG_CHECKING([for zlib's shared library name])
AC_MSG_RESULT([$LIBZ])
AC_SUBST([LIBZ])
AC_CACHE_SAVE
m4_include([config-daemon.ac])

189
doc/guix.texi
View file

@ -17,6 +17,7 @@ Copyright @copyright{} 2015, 2016 Mathieu Lirzin@*
Copyright @copyright{} 2014 Pierre-Antoine Rault@*
Copyright @copyright{} 2015 Taylan Ulrich Bayırlı/Kammer@*
Copyright @copyright{} 2015, 2016 Leo Famulari@*
Copyright @copyright{} 2015, 2016 Ricardo Wurmus@*
Copyright @copyright{} 2016 Ben Woodcroft@*
Copyright @copyright{} 2016 Chris Marusich@*
Copyright @copyright{} 2016 Efraim Flashner
@ -546,6 +547,10 @@ Installing
allow you to use the @command{guix import pypi} command (@pxref{Invoking
guix import}). It is of
interest primarily for developers and not for casual users.
@item
When @url{http://zlib.net, zlib} is available, @command{guix publish}
can compress build byproducts (@pxref{Invoking guix publish}).
@end itemize
Unless @code{--disable-daemon} was passed to @command{configure}, the
@ -2669,6 +2674,7 @@ Examples include:
download a file from the HTTP, HTTPS, or FTP URL specified in the
@code{uri} field;
@vindex git-fetch
@item @var{git-fetch} from @code{(guix git-download)}
clone the Git version control repository, and check out the revision
specified in the @code{uri} field as a @code{git-reference} object; a
@ -2686,6 +2692,10 @@ A bytevector containing the SHA-256 hash of the source. Typically the
@code{base32} form is used here to generate the bytevector from a
base-32 string.
You can obtain this information using @code{guix download}
(@pxref{Invoking guix download}) or @code{guix hash} (@pxref{Invoking
guix hash}).
@item @code{file-name} (default: @code{#f})
The file name under which the source code should be saved. When this is
@code{#f}, a sensible default value will be used in most cases. In case
@ -2697,8 +2707,9 @@ file name explicitly because the default is not very descriptive.
A list of file names containing patches to be applied to the source.
@item @code{snippet} (default: @code{#f})
A quoted piece of code that will be run in the source directory to make
any modifications, which is sometimes more convenient than a patch.
A G-expression (@pxref{G-Expressions}) or S-expression that will be run
in the source directory. This is a convenient way to modify the source,
sometimes more convenient than a patch.
@item @code{patch-flags} (default: @code{'("-p1")})
A list of command-line flags that should be passed to the @code{patch}
@ -2713,10 +2724,6 @@ such as GNU@tie{}Patch.
A list of Guile modules that should be loaded during the patching
process and while running the code in the @code{snippet} field.
@item @code{imported-modules} (default: @code{'()})
The list of Guile modules to import in the patch derivation, for use by
the @code{snippet}.
@item @code{patch-guile} (default: @code{#f})
The Guile package that should be used in the patching process. When
this is @code{#f}, a sensible default is used.
@ -3697,6 +3704,30 @@ In the example above, the native build of @var{coreutils} is used, so
that @command{ln} can actually run on the host; but then the
cross-compiled build of @var{emacs} is referenced.
@cindex imported modules, for gexps
@findex with-imported-modules
Another gexp feature is @dfn{imported modules}: sometimes you want to be
able to use certain Guile modules from the ``host environment'' in the
gexp, so those modules should be imported in the ``build environment''.
The @code{with-imported-modules} form allows you to express that:
@example
(let ((build (with-imported-modules '((guix build utils))
#~(begin
(use-modules (guix build utils))
(mkdir-p (string-append #$output "/bin"))))))
(gexp->derivation "empty-dir"
#~(begin
#$build
(display "success!\n")
#t)))
@end example
@noindent
In this example, the @code{(guix build utils)} module is automatically
pulled into the isolated build environment of our gexp, such that
@code{(use-modules (guix build utils))} works as expected.
The syntactic form to construct gexps is summarized below.
@deffn {Scheme Syntax} #~@var{exp}
@ -3756,6 +3787,16 @@ G-expressions created by @code{gexp} or @code{#~} are run-time objects
of the @code{gexp?} type (see below.)
@end deffn
@deffn {Scheme Syntax} with-imported-modules @var{modules} @var{body}@dots{}
Mark the gexps defined in @var{body}@dots{} as requiring @var{modules}
in their execution environment. @var{modules} must be a list of Guile
module names, such as @code{'((guix build utils) (guix build gremlin))}.
This form has @emph{lexical} scope: it has an effect on the gexps
directly defined in @var{body}@dots{}, but not on those defined, say, in
procedures called from @var{body}@dots{}.
@end deffn
@deffn {Scheme Procedure} gexp? @var{obj}
Return @code{#t} if @var{obj} is a G-expression.
@end deffn
@ -3781,7 +3822,9 @@ stored in a file called @var{script-name}. When @var{target} is true,
it is used as the cross-compilation target triplet for packages referred
to by @var{exp}.
Make @var{modules} available in the evaluation context of @var{exp};
@var{modules} is deprecated in favor of @code{with-imported-modules}.
Its meaning is to
make @var{modules} available in the evaluation context of @var{exp};
@var{modules} is a list of names of Guile modules searched in
@var{module-path} to be copied in the store, compiled, and made available in
the load path during the execution of @var{exp}---e.g., @code{((guix
@ -3862,10 +3905,9 @@ This is the declarative counterpart of @code{text-file}.
@end deffn
@deffn {Scheme Procedure} computed-file @var{name} @var{gexp} @
[#:modules '()] [#:options '(#:local-build? #t)]
[#:options '(#:local-build? #t)]
Return an object representing the store item @var{name}, a file or
directory computed by @var{gexp}. @var{modules} specifies the set of
modules visible in the execution context of @var{gexp}. @var{options}
directory computed by @var{gexp}. @var{options}
is a list of additional arguments to pass to @code{gexp->derivation}.
This is the declarative counterpart of @code{gexp->derivation}.
@ -3873,7 +3915,7 @@ This is the declarative counterpart of @code{gexp->derivation}.
@deffn {Monadic Procedure} gexp->script @var{name} @var{exp}
Return an executable script @var{name} that runs @var{exp} using
@var{guile} with @var{modules} in its search path.
@var{guile}, with @var{exp}'s imported modules in its search path.
The example below builds a script that simply invokes the @command{ls}
command:
@ -3899,16 +3941,20 @@ executable file @file{/gnu/store/@dots{}-list-files} along these lines:
@end deffn
@deffn {Scheme Procedure} program-file @var{name} @var{exp} @
[#:modules '()] [#:guile #f]
[#:guile #f]
Return an object representing the executable store item @var{name} that
runs @var{gexp}. @var{guile} is the Guile package used to execute that
script, and @var{modules} is the list of modules visible to that script.
script.
This is the declarative counterpart of @code{gexp->script}.
@end deffn
@deffn {Monadic Procedure} gexp->file @var{name} @var{exp}
@deffn {Monadic Procedure} gexp->file @var{name} @var{exp} @
[#:set-load-path? #t]
Return a derivation that builds a file @var{name} containing @var{exp}.
When @var{set-load-path?} is true, emit code in the resulting file to
set @code{%load-path} and @code{%load-compiled-path} to honor
@var{exp}'s imported modules.
The resulting file holds references to all the dependencies of @var{exp}
or a subset thereof.
@ -4533,6 +4579,17 @@ hash (@pxref{Invoking guix archive}).
@c FIXME: Replace xref above with xref to an ``Archive'' section when
@c it exists.
@vindex git-fetch
As an example, here is how you would compute the hash of a Git checkout,
which is useful when using the @code{git-fetch} method (@pxref{origin
Reference}):
@example
$ git clone http://example.org/foo.git
$ cd foo
$ rm -rf .git
$ guix hash -r .
@end example
@end table
@node Invoking guix import
@ -5592,6 +5649,18 @@ accept connections from any interface.
Change privileges to @var{user} as soon as possible---i.e., once the
server socket is open and the signing key has been read.
@item --compression[=@var{level}]
@itemx -C [@var{level}]
Compress data using the given @var{level}. When @var{level} is zero,
disable compression. The range 1 to 9 corresponds to different gzip
compression levels: 1 is the fastest, and 9 is the best (CPU-intensive).
The default is 3.
Compression occurs on the fly and the compressed streams are not
cached. Thus, to reduce load on the machine that runs @command{guix
publish}, it may be a good idea to choose a low compression level, or to
run @command{guix publish} behind a caching proxy.
@item --ttl=@var{ttl}
Produce @code{Cache-Control} HTTP headers that advertise a time-to-live
(TTL) of @var{ttl}. @var{ttl} must denote a duration: @code{5d} means 5
@ -7494,6 +7563,41 @@ created by @command{guix archive --generate-key} (@pxref{Invoking guix
archive}). If that is not the case, the service will fail to start.
@end deffn
@anchor{rngd-service}
@deffn {Scheme Procedure} rngd-service [#:rng-tools @var{rng-tools}] @
[#:device "/dev/hwrng"]
Return a service that runs the @command{rngd} program from @var{rng-tools}
to add @var{device} to the kernel's entropy pool. The service will fail if
@var{device} does not exist.
@end deffn
@anchor{pam-limits-service}
@cindex session limits
@cindex ulimit
@cindex priority
@deffn {Scheme Procedure} pam-limits-service [#:limits @var{limits}]
Return a service that installs a configuration file for the
@uref{http://linux-pam.org/Linux-PAM-html/sag-pam_limits.html,
@code{pam_limits} module}. The procedure optionally takes a list of
@code{pam-limits-entry} values, which can be used to specify
@code{ulimit} limits and nice priority limits to user sessions.
The following limits definition sets two hard and soft limits for all
login sessions of users in the @code{realtime} group:
@example
(pam-limits-service
(list
(pam-limits-entry "@@realtime" 'both 'rtprio 99)
(pam-limits-entry "@@realtime" 'both 'memlock 'unlimited)))
@end example
The first entry increases the maximum realtime priority for
non-privileged processes; the second entry lifts any restriction of the
maximum address space that can be locked in memory. These settings are
commonly used for real-time audio systems.
@end deffn
@node Scheduled Job Execution
@subsubsection Scheduled Job Execution
@ -7602,7 +7706,7 @@ Protocol (DHCP) client, on all the non-loopback network interfaces.
@end deffn
@deffn {Scheme Procedure} static-networking-service @var{interface} @var{ip} @
[#:gateway #f] [#:name-services @code{'()}]
[#:gateway #f] [#:name-servers @code{'()}]
Return a service that starts @var{interface} with address @var{ip}. If
@var{gateway} is true, it must be a string specifying the default network
gateway.
@ -7695,7 +7799,7 @@ In addition, @var{extra-settings} specifies a string to append to the
configuration file.
@end deffn
Furthermore, @code{(gnu services ssh)} provides the following service.
Furthermore, @code{(gnu services ssh)} provides the following services.
@deffn {Scheme Procedure} lsh-service [#:host-key "/etc/lsh/host-key"] @
[#:daemonic? #t] [#:interfaces '()] [#:port-number 22] @
@ -7733,6 +7837,47 @@ root.
The other options should be self-descriptive.
@end deffn
@deffn {Scheme Procedure} dropbear-service [@var{config}]
Run the @uref{https://matt.ucc.asn.au/dropbear/dropbear.html,Dropbear SSH
daemon} with the given @var{config}, a @code{<dropbear-configuration>}
object.
For example, to specify a Dropbear service listening on port 1234, add
this call to the operating system's @code{services} field:
@example
(dropbear-service (dropbear-configuration
(port-number 1234)))
@end example
@end deffn
@deftp {Data Type} dropbear-configuration
This data type represents the configuration of a Dropbear SSH daemon.
@table @asis
@item @code{dropbear} (default: @var{dropbear})
The Dropbear package to use.
@item @code{port-number} (default: 22)
The TCP port where the daemon waits for incoming connections.
@item @code{syslog-output?} (default: @code{#t})
Whether to enable syslog output.
@item @code{pid-file} (default: @code{"/var/run/dropbear.pid"})
File name of the daemon's PID file.
@item @code{root-login?} (default: @code{#f})
Whether to allow @code{root} logins.
@item @code{allow-empty-passwords?} (default: @code{#f})
Whether to allow empty passwords.
@item @code{password-authentication?} (default: @code{#t})
Whether to enable password-based authentication.
@end table
@end deftp
@defvr {Scheme Variable} %facebook-host-aliases
This variable contains a string for use in @file{/etc/hosts}
(@pxref{Host Names,,, libc, The GNU C Library Reference Manual}). Each
@ -7767,7 +7912,7 @@ The @code{(gnu services avahi)} provides the following definition.
@deffn {Scheme Procedure} avahi-service [#:avahi @var{avahi}] @
[#:host-name #f] [#:publish? #t] [#:ipv4? #t] @
[#:ipv6? #t] [#:wide-area? #f] @
[#:domains-to-browse '()]
[#:domains-to-browse '()] [#:debug? #f]
Return a service that runs @command{avahi-daemon}, a system-wide
mDNS/DNS-SD responder that allows for service discovery and
"zero-configuration" host name lookups (see @uref{http://avahi.org/}), and
@ -9973,15 +10118,11 @@ program. That gives a lot of flexibility. The
program to run in that initrd.
@deffn {Monadic Procedure} expression->initrd @var{exp} @
[#:guile %guile-static-stripped] [#:name "guile-initrd"] @
[#:modules '()]
[#:guile %guile-static-stripped] [#:name "guile-initrd"]
Return a derivation that builds a Linux initrd (a gzipped cpio archive)
containing @var{guile} and that evaluates @var{exp}, a G-expression,
upon booting. All the derivations referenced by @var{exp} are
automatically copied to the initrd.
@var{modules} is a list of Guile module names to be embedded in the
initrd.
@end deffn
@node GRUB Configuration
@ -10805,10 +10946,6 @@ where @var{service-name} is one of the symbols in @var{provision}
This is the list of modules that must be in scope when @code{start} and
@code{stop} are evaluated.
@item @code{imported-modules} (default: @var{%default-imported-modules})
This is the list of modules to import in the execution environment of
the Shepherd.
@end table
@end deftp

2
emacs/guix-devel.el
View file

@ -216,6 +216,7 @@ to find 'modify-phases' keywords."
"with-derivation-substitute"
"with-directory-excursion"
"with-error-handling"
"with-imported-modules"
"with-monad"
"with-mutex"
"with-store"))
@ -306,6 +307,7 @@ Each rule should have a form (SYMBOL VALUE). See `put' for details."
(with-derivation-substitute 2)
(with-directory-excursion 1)
(with-error-handling 0)
(with-imported-modules 1)
(with-monad 1)
(with-mutex 1)
(with-store 1)

1
etc/guix-daemon.service.in
View file

@ -7,6 +7,7 @@ Description=Build daemon for GNU Guix
[Service]
ExecStart=@bindir@/guix-daemon --build-users-group=guixbuild
Environment=GUIX_LOCPATH=/root/.guix-profile/lib/locale
RemainAfterExit=yes
StandardOutput=syslog
StandardError=syslog

15
gnu/local.mk
View file

@ -150,6 +150,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/gnustep.scm \
%D%/packages/gnuzilla.scm \
%D%/packages/gnu-pw-mgr.scm \
%D%/packages/golang.scm \
%D%/packages/gperf.scm \
%D%/packages/gprolog.scm \
%D%/packages/gps.scm \
@ -214,7 +215,6 @@ GNU_SYSTEM_MODULES = \
%D%/packages/llvm.scm \
%D%/packages/lout.scm \
%D%/packages/logging.scm \
%D%/packages/lsh.scm \
%D%/packages/lsof.scm \
%D%/packages/lua.scm \
%D%/packages/lxde.scm \
@ -441,7 +441,6 @@ dist_patch_DATA = \
%D%/packages/patches/automake-test-gzip-warning.patch \
%D%/packages/patches/avahi-localstatedir.patch \
%D%/packages/patches/avidemux-install-to-lib.patch \
%D%/packages/patches/avrdude-fix-libusb.patch \
%D%/packages/patches/awesome-reproducible-png.patch \
%D%/packages/patches/bash-completion-directories.patch \
%D%/packages/patches/beets-image-test-failure.patch \
@ -454,6 +453,7 @@ dist_patch_DATA = \
%D%/packages/patches/cdparanoia-fpic.patch \
%D%/packages/patches/chmlib-inttypes.patch \
%D%/packages/patches/clang-libc-search-path.patch \
%D%/packages/patches/clang-3.8-libc-search-path.patch \
%D%/packages/patches/clucene-pkgconfig.patch \
%D%/packages/patches/cmake-fix-tests.patch \
%D%/packages/patches/cpio-gets-undeclared.patch \
@ -511,10 +511,16 @@ dist_patch_DATA = \
%D%/packages/patches/gcc-cross-environment-variables.patch \
%D%/packages/patches/gcc-libvtv-runpath.patch \
%D%/packages/patches/gcc-5.0-libvtv-runpath.patch \
%D%/packages/patches/gd-CVE-2016-5766.patch \
%D%/packages/patches/gd-CVE-2016-6128.patch \
%D%/packages/patches/gd-CVE-2016-6132.patch \
%D%/packages/patches/gd-CVE-2016-6214.patch \
%D%/packages/patches/gd-fix-test-on-i686.patch \
%D%/packages/patches/gegl-CVE-2012-4433.patch \
%D%/packages/patches/geoclue-config.patch \
%D%/packages/patches/ghostscript-CVE-2015-3228.patch \
%D%/packages/patches/ghostscript-runpath.patch \
%D%/packages/patches/gimp-CVE-2016-4994.patch \
%D%/packages/patches/glib-networking-ssl-cert-file.patch \
%D%/packages/patches/glib-tests-timer.patch \
%D%/packages/patches/glibc-bootstrap-system.patch \
@ -590,6 +596,7 @@ dist_patch_DATA = \
%D%/packages/patches/jasper-CVE-2016-2089.patch \
%D%/packages/patches/jasper-CVE-2016-2116.patch \
%D%/packages/patches/jbig2dec-ignore-testtest.patch \
%D%/packages/patches/khmer-use-libraries.patch \
%D%/packages/patches/kmod-module-directory.patch \
%D%/packages/patches/ldc-disable-tests.patch \
%D%/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch \
@ -603,7 +610,6 @@ dist_patch_DATA = \
%D%/packages/patches/libdrm-symbol-check.patch \
%D%/packages/patches/libevent-dns-tests.patch \
%D%/packages/patches/libextractor-ffmpeg-3.patch \
%D%/packages/patches/libmtp-devices.patch \
%D%/packages/patches/liboop-mips64-deplibs-fix.patch \
%D%/packages/patches/libotr-test-auth-fix.patch \
%D%/packages/patches/liblxqt-include.patch \
@ -673,7 +679,6 @@ dist_patch_DATA = \
%D%/packages/patches/ocaml-CVE-2015-8869.patch \
%D%/packages/patches/ocaml-findlib-make-install.patch \
%D%/packages/patches/openexr-missing-samples.patch \
%D%/packages/patches/openimageio-boost-1.60.patch \
%D%/packages/patches/openjpeg-CVE-2015-6581.patch \
%D%/packages/patches/openjpeg-use-after-free-fix.patch \
%D%/packages/patches/openssh-CVE-2015-8325.patch \
@ -729,6 +734,7 @@ dist_patch_DATA = \
%D%/packages/patches/python-2.7-source-date-epoch.patch \
%D%/packages/patches/python-3-deterministic-build-info.patch \
%D%/packages/patches/python-3-search-paths.patch \
%D%/packages/patches/python-dendropy-exclude-failing-tests.patch \
%D%/packages/patches/python-disable-ssl-test.patch \
%D%/packages/patches/python-fix-tests.patch \
%D%/packages/patches/python-ipython-inputhook-ctype.patch \
@ -760,7 +766,6 @@ dist_patch_DATA = \
%D%/packages/patches/slim-sigusr1.patch \
%D%/packages/patches/slurm-configure-remove-nonfree-contribs.patch \
%D%/packages/patches/soprano-find-clucene.patch \
%D%/packages/patches/sudo-CVE-2015-5602.patch \
%D%/packages/patches/superlu-dist-scotchmetis.patch \
%D%/packages/patches/synfig-build-fix.patch \
%D%/packages/patches/t1lib-CVE-2010-2642.patch \

57
gnu/packages/admin.scm
View file

@ -11,6 +11,7 @@
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Peter Feigl <peter.feigl@nexoid.at>
;;; Copyright © 2016 John J. Foerch <jjfoerch@earthlink.net>
;;;
;;; This file is part of GNU Guix.
;;;
@ -789,18 +790,17 @@ (define-public rottlog
(define-public sudo
(package
(name "sudo")
(version "1.8.15")
(version "1.8.17p1")
(source (origin
(method url-fetch)
(uri
(list (string-append "http://www.sudo.ws/sudo/dist/sudo-"
(list (string-append "https://www.sudo.ws/sudo/dist/sudo-"
version ".tar.gz")
(string-append "ftp://ftp.sudo.ws/pub/sudo/OLD/sudo-"
version ".tar.gz")))
(sha256
(base32
"0263gi6i19fyzzc488n0qw3m518i39f6a7qmrfvahk9j10bkh5j3"))
(patches (search-patches "sudo-CVE-2015-5602.patch"))))
"1k2mn65l1kmsxm8wh0gjxy496xhbpiimbpm6yv6kw6snzc3xg466"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@ -849,7 +849,7 @@ (define-public sudo
`(("groff" ,groff)
("linux-pam" ,linux-pam)
("coreutils" ,coreutils)))
(home-page "http://www.sudo.ws/")
(home-page "https://www.sudo.ws/")
(synopsis "Run commands as root")
(description
"Sudo (su \"do\") allows a system administrator to delegate authority to
@ -1139,19 +1139,20 @@ (define-public detox
(define-public testdisk
(package
(name "testdisk")
(version "6.14")
(version "7.0")
(source (origin
(method url-fetch)
(uri (string-append "http://www.cgsecurity.org/testdisk-"
version ".tar.bz2"))
(sha256
(base32
"0v1jap83f5h99zv01v3qmqm160d36n4ysi0gyq7xzb3mqgmw75x5"))))
"0ba4wfz2qrf60vwvb1qsq9l6j0pgg81qgf7fh22siaz649mkpfq0"))))
(build-system gnu-build-system)
(inputs
`(;; ("ntfs" ,ntfs)
`(("ntfs-3g" ,ntfs-3g)
("util-linux" ,util-linux)
("openssl" ,openssl)
;; FIXME: add reiserfs
("zlib" ,zlib)
("e2fsprogs" ,e2fsprogs)
("libjpeg" ,libjpeg)
@ -1345,17 +1346,14 @@ (define-public graphios
(define-public ansible
(package
(name "ansible")
(version "1.9.2")
(version "2.1.0.0")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/a/ansible/ansible-"
version
".tar.gz"))
(uri (pypi-uri "ansible" version))
(sha256
(base32
"007fzgsqaahb0y4gjdxxmir9kcni7wph2z14jhqgpz88idrz8pn2"))))
"1bfc2xiplpad6f2nwi48y0kps7xqnsll85dlz63cy8k5bysl6d20"))))
(build-system python-build-system)
(native-inputs
`(("python2-setuptools" ,python2-setuptools)
@ -1708,3 +1706,34 @@ (define-public thefuck
"The Fuck tries to match a rule for a previous, mistyped command, creates
a new command using the matched rule, and runs it.")
(license license:x11)))
(define-public di
(package
(name "di")
(version "4.42")
(source
(origin
(method url-fetch)
(uri (string-append "https://gentoo.com/di/di-" version ".tar.gz"))
(sha256
(base32 "1i6m9zdnidn8268q1lz9fd8payk7s4pgwh5zlam9rr4dy6h6a67n"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; Obscure test failures.
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-before 'build 'setup-environment
(lambda* (#:key outputs #:allow-other-keys)
(setenv "CC" "gcc")
(setenv "prefix" (assoc-ref outputs "out"))
#t)))
#:make-flags (list "--environment-overrides")))
(home-page "https://www.gentoo.com/di/")
(synopsis "Advanced df like disk information utility")
(description
"'di' is a disk information utility, displaying everything
(and more) that your @code{df} command does. It features the ability to
display your disk usage in whatever format you prefer. It is designed to be
highly portable. Great for heterogenous networks.")
(license license:zlib)))

4
gnu/packages/algebra.scm
View file

@ -202,7 +202,7 @@ (define-public gp2c
(define-public giac-xcas
(package
(name "giac-xcas")
(version "1.2.2-59")
(version "1.2.2-75")
(source (origin
(method url-fetch)
;; "~parisse/giac" is not used because the maintainer regularly
@ -214,7 +214,7 @@ (define-public giac-xcas
"source/giac_" version ".tar.gz"))
(sha256
(base32
"02s774v2zg2ya43rm8s7bcwzrmp4wlmn8h2rlg4816zpfrjkrdn4"))))
"0vs111fkd900wkm7yypaxmplc8i8j63d9shc3fbdhddn7cdj70b1"))))
(build-system gnu-build-system)
(arguments
`(#:phases

9
gnu/packages/backup.scm
View file

@ -407,17 +407,14 @@ (define-public libchop
(define-public borg
(package
(name "borg")
(version "1.0.3")
(version "1.0.6")
(source (origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/"
"c9/c6/1efc338724b054d4d264dfeadfcba11cefa6c3c50f474cec91b8f0c21d3a"
"/borgbackup-" version ".tar.gz"))
(uri (pypi-uri "borgbackup" version))
(sha256
(base32
"0kzr0xa00yjfxx27aipli67qg5ffj52yrnqhpf3sdy6k5wzwaybs"))))
"1dxn9p4xm0zd32xzzd9hs4a542db34clykrrnnv3hrdnc394895p"))))
(build-system python-build-system)
(arguments
`(#:phases

636
gnu/packages/bioinformatics.scm
View file

@ -27,6 +27,7 @@ (define-module (gnu packages bioinformatics)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix hg-download)
#:use-module (guix build-system ant)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
@ -49,18 +50,23 @@ (define-module (gnu packages bioinformatics)
#:use-module (gnu packages file)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages linux)
#:use-module (gnu packages logging)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages pcre)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages readline)
#:use-module (gnu packages ruby)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tbb)
@ -70,6 +76,7 @@ (define-module (gnu packages bioinformatics)
#:use-module (gnu packages vim)
#:use-module (gnu packages web)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages zip)
#:use-module (srfi srfi-1))
@ -215,7 +222,7 @@ (define-public bedops
(define-public bedtools
(package
(name "bedtools")
(version "2.25.0")
(version "2.26.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/archive/v"
@ -223,7 +230,7 @@ (define-public bedtools
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1ywcy3yfwzhl905b51l0ffjia55h75vv3mw5xkvib04pp6pj548m"))))
"0xvri5hnp2iim1cx6mcd5d9f102p5ql41x69rd6106x1c17pinqm"))))
(build-system gnu-build-system)
(native-inputs `(("python" ,python-2)))
(inputs `(("samtools" ,samtools)
@ -251,6 +258,51 @@ (define-public bedtools
BED, GFF/GTF, VCF.")
(license license:gpl2)))
;; Later releases of bedtools produce files with more columns than
;; what Ribotaper expects.
(define-public bedtools-2.18
(package (inherit bedtools)
(name "bedtools")
(version "2.18.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
(define-public ribotaper
(package
(name "ribotaper")
(version "1.3.1")
(source (origin
(method url-fetch)
(uri (string-append "https://ohlerlab.mdc-berlin.de/"
"files/RiboTaper/RiboTaper_Version_"
version ".tar.gz"))
(sha256
(base32
"0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv"))))
(build-system gnu-build-system)
(inputs
`(("bedtools" ,bedtools-2.18)
("samtools" ,samtools-0.1)
("r" ,r)
("r-foreach" ,r-foreach)
("r-xnomial" ,r-xnomial)
("r-domc" ,r-domc)
("r-multitaper" ,r-multitaper)
("r-seqinr" ,r-seqinr)))
(home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/")
(synopsis "Define translated ORFs using ribosome profiling data")
(description
"Ribotaper is a method for defining translated @dfn{open reading
frames} (ORFs) using ribosome profiling (ribo-seq) data. This package
provides the Ribotaper pipeline.")
(license license:gpl3+)))
(define-public bioawk
(package
(name "bioawk")
@ -421,7 +473,7 @@ (define-public python2-biopython
(define-public blast+
(package
(name "blast+")
(version "2.2.31")
(version "2.4.0")
(source (origin
(method url-fetch)
(uri (string-append
@ -429,7 +481,7 @@ (define-public blast+
version "/ncbi-blast-" version "+-src.tar.gz"))
(sha256
(base32
"19gq6as4k1jrgsd26158ads6h7v4jca3h4r5dzg1y0m6ya50x5ph"))
"14n9jik6vhiwjd3m7bach4xj1pzfn0szbsbyfxybd9l9cc43b6mb"))
(modules '((guix build utils)))
(snippet
'(begin
@ -1439,6 +1491,40 @@ (define-public python2-pybigwig
(native-inputs
`(("python-setuptools" ,python2-setuptools))))))
(define-public python-dendropy
(package
(name "python-dendropy")
(version "4.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "DendroPy" version))
(sha256
(base32
"1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))
;; There are two known test failures that will be fixed in the next
;; release after 4.1.0.
;; https://github.com/jeetsukumaran/DendroPy/issues/48
(patches (search-patches
"python-dendropy-exclude-failing-tests.patch"))))
(build-system python-build-system)
(home-page "http://packages.python.org/DendroPy/")
(synopsis "Library for phylogenetics and phylogenetic computing")
(description
"DendroPy is a library for phylogenetics and phylogenetic computing: reading,
writing, simulation, processing and manipulation of phylogenetic
trees (phylogenies) and characters.")
(license license:bsd-3)
(properties `((python2-variant . ,(delay python2-dendropy))))))
(define-public python2-dendropy
(let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
(package
(inherit base)
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public deeptools
(package
(name "deeptools")
@ -1482,7 +1568,7 @@ (define-public deeptools
(define-public diamond
(package
(name "diamond")
(version "0.8.7")
(version "0.8.15")
(source (origin
(method url-fetch)
(uri (string-append
@ -1491,7 +1577,7 @@ (define-public diamond
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"15r7gcrqc4pv5d4kvv530zc3xnni92c74y63zrxzidriss7591yx"))))
"14n0p28b4i5j8vvz1fl4xj1gxnpg98bj0kr3i90mhn7miwr4pkpw"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no "check" target
@ -1517,6 +1603,75 @@ (define-public diamond
(license (license:non-copyleft "file://src/COPYING"
"See src/COPYING in the distribution."))))
(define-public eigensoft
(let ((revision "1")
(commit "b14d1e202e21e532536ff8004f0419cd5e259dc7"))
(package
(name "eigensoft")
(version (string-append "6.1.2-"
revision "."
(string-take commit 9)))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/DReichLab/EIG.git")
(commit commit)))
(file-name (string-append "eigensoft-" commit "-checkout"))
(sha256
(base32
"0f5m6k2j5c16xc3xbywcs989xyc26ncy1zfzp9j9n55n9r4xcaiq"))
(modules '((guix build utils)))
;; Remove pre-built binaries.
(snippet '(begin
(delete-file-recursively "bin")
(mkdir "bin")
#t))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There are no tests.
#:make-flags '("CC=gcc")
#:phases
(modify-phases %standard-phases
;; There is no configure phase, but the Makefile is in a
;; sub-directory.
(replace 'configure
(lambda _
(chdir "src")
;; The link flags are incomplete.
(substitute* "Makefile"
(("-lgsl") "-lgsl -lm -llapack -llapacke -lpthread"))
#t))
;; The provided install target only copies executables to
;; the "bin" directory in the build root.
(add-after 'install 'actually-install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
(mkdir-p bin)
(for-each (lambda (file)
(install-file file bin))
(find-files "../bin" ".*"))
#t))))))
(inputs
`(("gsl" ,gsl)
("lapack" ,lapack)
("openblas" ,openblas)
("perl" ,perl)
("gfortran" ,gfortran "lib")))
(home-page "https://github.com/DReichLab/EIG")
(synopsis "Tools for population genetics")
(description "The EIGENSOFT package provides tools for population
genetics and stratification correction. EIGENSOFT implements methods commonly
used in population genetics analyses such as PCA, computation of Tracy-Widom
statistics, and finding related individuals in structured populations. It
comes with a built-in plotting script and supports multiple file formats and
quantitative phenotypes.")
;; The license of the eigensoft tools is Expat, but since it's
;; linking with the GNU Scientific Library (GSL) the effective
;; license is the GPL.
(license license:gpl3+))))
(define-public edirect
(package
(name "edirect")
@ -2170,7 +2325,7 @@ (define-public java-htsjdk
(define-public htslib
(package
(name "htslib")
(version "1.2.1")
(version "1.3.1")
(source (origin
(method url-fetch)
(uri (string-append
@ -2178,7 +2333,7 @@ (define-public htslib
version "/htslib-" version ".tar.bz2"))
(sha256
(base32
"1c32ssscbnjwfw3dra140fq7riarp2x990qxybh34nr1p5r17nxx"))))
"1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9"))))
(build-system gnu-build-system)
(arguments
`(#:phases
@ -2301,6 +2456,87 @@ (define-public jellyfish
;; files such as lib/jsoncpp.cpp are released under the Expat license.
(license (list license:gpl3+ license:expat))))
(define-public khmer
(package
(name "khmer")
(version "2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "khmer" version))
(sha256
(base32
"0wb05shqh77v00256qlm68vbbx3kl76fyzihszbz5nhanl4ni33a"))
(patches (search-patches "khmer-use-libraries.patch"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'set-paths
(lambda* (#:key inputs outputs #:allow-other-keys)
;; Delete bundled libraries.
(delete-file-recursively "third-party/zlib")
(delete-file-recursively "third-party/bzip2")
;; Replace bundled seqan.
(let* ((seqan-all "third-party/seqan")
(seqan-include (string-append
seqan-all "/core/include")))
(delete-file-recursively seqan-all)
(copy-recursively (string-append (assoc-ref inputs "seqan")
"/include/seqan")
(string-append seqan-include "/seqan")))
;; We do not replace the bundled MurmurHash as the canonical
;; repository for this code 'SMHasher' is unsuitable for
;; providing a library. See
;; https://lists.gnu.org/archive/html/guix-devel/2016-06/msg00977.html
#t))
(add-after 'unpack 'set-cc
(lambda _
(setenv "CC" "gcc")
#t))
;; It is simpler to test after installation.
(delete 'check)
(add-after 'install 'post-install-check
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(setenv "PATH"
(string-append
(getenv "PATH")
":"
(assoc-ref outputs "out")
"/bin"))
(setenv "PYTHONPATH"
(string-append
(getenv "PYTHONPATH")
":"
out
"/lib/python"
(string-take (string-take-right
(assoc-ref inputs "python") 5) 3)
"/site-packages"))
(with-directory-excursion "build"
(zero? (system* "nosetests" "khmer" "--attr"
"!known_failing")))))))))
(native-inputs
`(("seqan" ,seqan)
("python-nose" ,python-nose)))
(inputs
`(("zlib" ,zlib)
("bzip2" ,bzip2)
("python-screed" ,python-screed)
("python-bz2file" ,python-bz2file)))
(home-page "https://khmer.readthedocs.org/")
(synopsis "K-mer counting, filtering and graph traversal library")
(description "The khmer software is a set of command-line tools for
working with DNA shotgun sequencing data from genomes, transcriptomes,
metagenomes and single cells. Khmer can make de novo assemblies faster, and
sometimes better. Khmer can also identify and fix problems with shotgun
data.")
;; When building on i686, armhf and mips64el, we get the following error:
;; error: ['khmer', 'khmer.tests', 'oxli'] require 64-bit operating system
(supported-systems '("x86_64-linux"))
(license license:bsd-3)))
(define-public macs
(package
(name "macs")
@ -2333,7 +2569,7 @@ (define-public macs
(define-public mafft
(package
(name "mafft")
(version "7.267")
(version "7.299")
(source (origin
(method url-fetch)
(uri (string-append
@ -2342,7 +2578,7 @@ (define-public mafft
(file-name (string-append name "-" version ".tgz"))
(sha256
(base32
"1xl6xq1rfxkws0svrlhyqxhhwbv6r77jwblsdpcyiwzsscw6wlk0"))))
"1pwwdy5a17ggx8h9v9y712ilswj27dc3d23r65l56jgjz67y5zc0"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no automated tests, though there are tests in the read me
@ -2408,7 +2644,7 @@ (define-public mafft
(define-public metabat
(package
(name "metabat")
(version "0.26.1")
(version "0.26.3")
(source (origin
(method url-fetch)
(uri (string-append
@ -2417,31 +2653,40 @@ (define-public metabat
(file-name (string-append name "-" version ".tar.bz2"))
(sha256
(base32
"0vgrhbaxg4dkxyax2kbigak7w0arhqvw0szwp6gd9wmyilc44kfa"))))
"1vpfvgsn8wdsv1g7z73zxcncskx7dy7bw5msg1hhibk25ay11pyg"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-includes
(lambda _
(substitute* "SConstruct"
(("/include/bam/bam.h")
"/include/samtools/bam.h"))
(substitute* "src/BamUtils.h"
(("^#include \"bam/bam\\.h\"")
"#include \"samtools/bam.h\"")
(("^#include \"bam/sam\\.h\"")
"#include \"samtools/sam.h\""))
(substitute* "src/KseqReader.h"
(("^#include \"bam/kseq\\.h\"")
"#include \"samtools/kseq.h\""))
#t))
(lambda _
(substitute* "src/BamUtils.h"
(("^#include \"bam/bam\\.h\"")
"#include \"samtools/bam.h\"")
(("^#include \"bam/sam\\.h\"")
"#include \"samtools/sam.h\""))
(substitute* "src/KseqReader.h"
(("^#include \"bam/kseq\\.h\"")
"#include \"htslib/kseq.h\""))
#t))
(add-after 'unpack 'fix-scons
(lambda _
(substitute* "SConstruct" ; Do not distribute README
(("^env\\.Install\\(idir_prefix, 'README\\.md'\\)")
""))
#t))
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "SConstruct"
(("^htslib_dir = 'samtools'")
(string-append "hitslib_dir = '"
(assoc-ref inputs "htslib")
"'"))
(("^samtools_dir = 'samtools'")
(string-append "samtools_dir = '"
(assoc-ref inputs "htslib")
"'"))
(("^findStaticOrShared\\('bam', hts_lib")
(string-append "findStaticOrShared('bam', '"
(assoc-ref inputs "samtools")
"/lib'"))
;; Do not distribute README.
(("^env\\.Install\\(idir_prefix, 'README\\.md'\\)") ""))
#t))
(delete 'configure)
(replace 'build
(lambda* (#:key inputs outputs #:allow-other-keys)
@ -2450,17 +2695,11 @@ (define-public metabat
(string-append
"PREFIX="
(assoc-ref outputs "out"))
(string-append
"HTSLIB_DIR="
(assoc-ref inputs "htslib"))
(string-append
"SAMTOOLS_DIR="
(assoc-ref inputs "samtools"))
(string-append
"BOOST_ROOT="
(assoc-ref inputs "boost"))
"install"))))
;; check and install carried out during build phase
;; Check and install are carried out during build phase.
(delete 'check)
(delete 'install))))
(inputs
@ -2919,6 +3158,75 @@ (define-public rseqc
distribution, coverage uniformity, strand specificity, etc.")
(license license:gpl3+)))
(define-public seek
;; There are no release tarballs. According to the installation
;; instructions at http://seek.princeton.edu/installation.jsp, the latest
;; stable release is identified by this changeset ID.
(let ((changeset "2329130")
(revision "1"))
(package
(name "seek")
(version (string-append "0-" revision "." changeset))
(source (origin
(method hg-fetch)
(uri (hg-reference
(url "https://bitbucket.org/libsleipnir/sleipnir")
(changeset changeset)))
(sha256
(base32
"0qrvilwh18dpbhkf92qvxbmay0j75ra3jg2wrhz67gf538zzphsx"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((srfi srfi-1)
(guix build gnu-build-system)
(guix build utils))
#:phases
(let ((dirs '("SeekMiner"
"SeekEvaluator"
"SeekPrep"
"Distancer"
"Data2DB"
"PCL2Bin")))
(modify-phases %standard-phases
(add-before 'configure 'bootstrap
(lambda _
(zero? (system* "bash" "gen_auto"))))
(add-after 'build 'build-additional-tools
(lambda* (#:key make-flags #:allow-other-keys)
(every (lambda (dir)
(with-directory-excursion (string-append "tools/" dir)
(zero? (apply system* "make" make-flags))))
dirs)))
(add-after 'install 'install-additional-tools
(lambda* (#:key make-flags #:allow-other-keys)
(fold (lambda (dir result)
(with-directory-excursion (string-append "tools/" dir)
(and result
(zero? (apply system*
`("make" ,@make-flags "install"))))))
#t dirs)))))))
(inputs
`(("gsl" ,gsl)
("boost" ,boost)
("libsvm" ,libsvm)
("readline" ,readline)
("gengetopt" ,gengetopt)
("log4cpp" ,log4cpp)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("perl" ,perl)))
(home-page "http://seek.princeton.edu")
(synopsis "Gene co-expression search engine")
(description
"SEEK is a computational gene co-expression search engine. SEEK provides
biologists with a way to navigate the massive human expression compendium that
now contains thousands of expression datasets. SEEK returns a robust ranking
of co-expressed genes in the biological area of interest defined by the user's
query genes. It also prioritizes thousands of expression datasets according
to the user's query of interest.")
(license license:cc-by3.0))))
(define-public samtools
(package
(name "samtools")
@ -3359,6 +3667,44 @@ (define-public preseq
complexity samples.")
(license license:gpl3+)))
(define-public python-screed
(package
(name "python-screed")
(version "0.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "screed" version))
(sha256
(base32
"18czszp9fkx3j6jr7y5kp6dfialscgddk05mw1zkhh2zhn0jd8i0"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
(setenv "PYTHONPATH"
(string-append (getenv "PYTHONPATH") ":."))
(zero? (system* "nosetests" "--attr" "!known_failing")))))))
(native-inputs
`(("python-nose" ,python-nose)))
(inputs
`(("python-bz2file" ,python-bz2file)))
(home-page "http://github.com/dib-lab/screed/")
(synopsis "Short read sequence database utilities")
(description "Screed parses FASTA and FASTQ files and generates databases.
Values such as sequence name, sequence description, sequence quality and the
sequence itself can be retrieved from these databases.")
(license license:bsd-3)))
(define-public python2-screed
(let ((base (package-with-python2 (strip-python2-variant python-screed))))
(package
(inherit base)
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public sra-tools
(package
(name "sra-tools")
@ -3600,7 +3946,7 @@ (define-public sortmerna
(define-public star
(package
(name "star")
(version "2.5.1b")
(version "2.5.2a")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/alexdobin/STAR/archive/"
@ -3608,7 +3954,7 @@ (define-public star
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0wzcfhkg10apnh0y73xlarfa79xxwxdizicbdl11wb48awk44iq4"))
"0xjlsm4p9flln111hv4xx7xy94c2nl53zvdvbk9winmiradjsdra"))
(modules '((guix build utils)))
(snippet
'(begin
@ -3665,6 +4011,8 @@ (define-public star
detection of canonical junctions, STAR can discover non-canonical splices and
chimeric (fusion) transcripts, and is also capable of mapping full-length RNA
sequences.")
;; Only 64-bit systems are supported according to the README.
(supported-systems '("x86_64-linux" "mips64el-linux"))
;; STAR is licensed under GPLv3 or later; htslib is MIT-licensed.
(license license:gpl3+)))
@ -3869,7 +4217,7 @@ (define-public r-vegan
(define-public vsearch
(package
(name "vsearch")
(version "2.0.0")
(version "2.0.1")
(source
(origin
(method url-fetch)
@ -3879,7 +4227,7 @@ (define-public vsearch
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1sd57abgx077icqrbj36jq9q7pdpzc6dbics2pn1555kisq2jhfh"))
"0q7szwbf7r29yxkhb415a8i51vj87kvl5ap7h09w7k9ycb2ywvzw"))
(modules '((guix build utils)))
(snippet
'(begin
@ -4191,6 +4539,30 @@ (define-public r-s4vectors
S4Vectors package itself.")
(license license:artistic2.0)))
(define-public r-seqinr
(package
(name "r-seqinr")
(version "3.1-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "seqinr" version))
(sha256
(base32
"0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ade4" ,r-ade4)))
(inputs
`(("zlib" ,zlib)))
(home-page "http://seqinr.r-forge.r-project.org/")
(synopsis "Biological sequences retrieval and analysis")
(description
"This package provides tools for exploratory data analysis and data
visualization of biological sequence (DNA and protein) data. It also includes
utilities for sequence data management under the ACNUC system.")
(license license:gpl2+)))
(define-public r-iranges
(package
(name "r-iranges")
@ -4246,6 +4618,31 @@ (define-public r-genomeinfodb
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
(define-public r-edger
(package
(name "r-edger")
(version "3.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
"14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-limma" ,r-limma)))
(home-page "http://bioinf.wehi.edu.au/edgeR")
(synopsis "EdgeR does empirical analysis of digital gene expression data")
(description "This package can do differential expression analysis of
RNA-seq expression profiles with biological replication. It implements a range
of statistical methodology based on the negative binomial distributions,
including empirical Bayes estimation, exact tests, generalized linear models
and quasi-likelihood tests. It be applied to differential signal analysis of
other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
(define-public r-variantannotation
(package
(name "r-variantannotation")
@ -4278,6 +4675,25 @@ (define-public r-variantannotation
coding changes and predict coding outcomes.")
(license license:artistic2.0)))
(define-public r-limma
(package
(name "r-limma")
(version "3.28.14")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "limma" version))
(sha256
(base32
"1jgn66ajafhjlqpfcw2p85h6ah8mgmz66znmsw6pcapia7d34akw"))))
(build-system r-build-system)
(home-page "http://bioinf.wehi.edu.au/limma")
(synopsis "Package for linear models for microarray and RNA-seq data")
(description "This package can be used for the analysis of gene expression
studies, especially the use of linear models for analysing designed experiments
and the assessment of differential expression. The analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
(define-public r-xvector
(package
(name "r-xvector")
@ -5237,6 +5653,115 @@ (define-public r-zlibbioc
libraries for systems that do not have these available via other means.")
(license license:artistic2.0)))
(define-public emboss
(package
(name "emboss")
(version "6.5.7")
(source (origin
(method url-fetch)
(uri (string-append "ftp://emboss.open-bio.org/pub/EMBOSS/old/"
(version-major+minor version) ".0/"
"EMBOSS-" version ".tar.gz"))
(sha256
(base32
"0vsmz96gc411yj2iyzdrsmg4l2n1nhgmp7vrgzlxx3xixv9xbf0q"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "--with-hpdf="
(assoc-ref %build-inputs "libharu")))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-checks
(lambda _
;; The PNGDRIVER tests check for the presence of libgd, libpng
;; and zlib, but assume that they are all found at the same
;; prefix.
(substitute* "configure.in"
(("CHECK_PNGDRIVER")
"LIBS=\"$LIBS -lgd -lpng -lz -lm\"
AC_DEFINE([PLD_png], [1], [Define to 1 if PNG support is available])
AM_CONDITIONAL(AMPNG, true)"))
#t))
(add-after 'unpack 'disable-update-check
(lambda _
;; At build time there is no connection to the Internet, so
;; looking for updates will not work.
(substitute* "Makefile.am"
(("\\$\\(bindir\\)/embossupdate") ""))
#t))
(add-before 'configure 'autogen
(lambda _ (zero? (system* "autoreconf" "-vif")))))))
(inputs
`(("perl" ,perl)
("libpng" ,libpng)
("gd" ,gd)
("libx11" ,libx11)
("libharu" ,libharu)
("zlib" ,zlib)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)
("pkg-config" ,pkg-config)))
(home-page "http://emboss.sourceforge.net")
(synopsis "Molecular biology analysis suite")
(description "EMBOSS is the \"European Molecular Biology Open Software
Suite\". EMBOSS is an analysis package specially developed for the needs of
the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. It also provides a
number of libraries for the development of software in the field of molecular
biology. EMBOSS also integrates a range of currently available packages and
tools for sequence analysis into a seamless whole.")
(license license:gpl2+)))
(define-public bits
(let ((revision "1")
(commit "3cc4567896d9d6442923da944beb704750a08d2d"))
(package
(name "bits")
;; The version is 2.13.0 even though no release archives have been
;; published as yet.
(version (string-append "2.13.0-" revision "." (string-take commit 9)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/arq5x/bits.git")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"17n2kffk4kmhivd8c98g2vr6y1s23vbg4sxlxs689wni66797hbs"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no tests included
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-after 'unpack 'remove-cuda
(lambda _
(substitute* "Makefile"
((".*_cuda") "")
(("(bits_test_intersections) \\\\" _ match) match))
#t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(copy-recursively
"bin" (string-append (assoc-ref outputs "out") "/bin"))
#t)))))
(inputs
`(("gsl" ,gsl)
("zlib" ,zlib)))
(home-page "https://github.com/arq5x/bits")
(synopsis "Implementation of binary interval search algorithm")
(description "This package provides an implementation of the
BITS (Binary Interval Search) algorithm, an approach to interval set
intersection. It is especially suited for the comparison of diverse genomic
datasets and the exploration of large datasets of genome
intervals (e.g. genes, sequence alignments).")
(license license:gpl2))))
(define-public piranha
;; There is no release tarball for the latest version. The latest commit is
;; older than one year at the time of this writing.
@ -5372,3 +5897,32 @@ (define-public filevercmp
(description "This program compares version strings. It intends to be a
replacement for strverscmp.")
(license license:gpl3+))))
(define-public multiqc
(package
(name "multiqc")
(version "0.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "multiqc" version))
(sha256
(base32
"0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy"))))
(build-system python-build-system)
(propagated-inputs
`(("python-jinja2" ,python-jinja2)
("python-simplejson" ,python-simplejson)
("python-pyyaml" ,python-pyyaml)
("python-click" ,python-click)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)))
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(home-page "http://multiqc.info")
(synopsis "Aggregate bioinformatics analysis reports")
(description
"MultiQC is a tool to aggregate bioinformatics results across many
samples into a single report. It contains modules for a large number of
common bioinformatics tools.")
(license license:gpl3)))

4
gnu/packages/bittorrent.scm
View file

@ -207,7 +207,7 @@ (define-public transmission-remote-cli
(define-public aria2
(package
(name "aria2")
(version "1.24.0")
(version "1.25.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/tatsuhiro-t/aria2/"
@ -215,7 +215,7 @@ (define-public aria2
name "-" version ".tar.xz"))
(sha256
(base32
"0dxzyy3x20vla4c4563zjqkl71djv731db6wn3h0gysgf399d91m"))))
"0d8drwc5m5ps4bw63iq2gng36gyc2vadzixbynk1dj6gfr6fp2gz"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--enable-libaria2")

67
gnu/packages/busybox.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -29,49 +30,48 @@ (define-module (gnu packages busybox)
(define-public busybox
(package
(name "busybox")
(version "1.22.1")
(version "1.25.0")
(source (origin
(method url-fetch)
(uri (string-append
"http://www.busybox.net/downloads/" name "-"
"https://www.busybox.net/downloads/" name "-"
version ".tar.bz2"))
(sha256
(base32
"12v7nri79v8gns3inmz4k24q7pcnwi00hybs0wddfkcy1afh42xf"))))
"1z52mh6prhd6v47qryz4rvng5r1z0am6masrnigq06zfhmlf03ss"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(alist-replace
'configure
(lambda _ (zero? (system* "make" "defconfig")))
(alist-replace
'check
(lambda _
(modify-phases %standard-phases
(replace 'configure
(lambda _ (zero? (system* "make" "defconfig"))))
(replace 'check
(lambda _
(substitute* '("testsuite/du/du-s-works"
"testsuite/du/du-works")
(("/bin") "/etc")) ; there is no /bin but there is a /etc
"testsuite/du/du-works")
(("/bin") "/etc")) ; there is no /bin but there is a /etc
;; There is no /usr/bin or /bin - replace it with /gnu/store
(substitute* "testsuite/cpio.tests"
(("/usr/bin") (%store-directory))
(("usr") (car (filter (negate string-null?)
(string-split (%store-directory) #\/)))))
(("/usr/bin") (%store-directory))
(("usr") (car (filter (negate string-null?)
(string-split (%store-directory) #\/)))))
(substitute* "testsuite/date/date-works-1"
(("/bin/date") (which "date")))
(("/bin/date") (which "date")))
;; The pidof tests assume that pid 1 is called "init" but that is not
;; true in guix build environment
(substitute* "testsuite/pidof.tests"
(("-s init") "-s $(cat /proc/1/comm)"))
(("-s init") "-s $(cat /proc/1/comm)"))
(substitute* "testsuite/grep.tests"
;; The subject of this test is buggy. It is known by upstream (fixed in git)
;; So mark it with SKIP_KNOWN_BUGS like the others.
;; Presumably it wasn't known at the time of release ...
;; (It is strange that they release software which they know to have bugs)
(("testing \"grep -w \\^str doesn't match str not at the beginning\"")
"test x\"$SKIP_KNOWN_BUGS\" = x\"\" && testing \"grep -w ^str doesn't match str not at the beginning\""))
;; The subject of this test is buggy. It is known by upstream (fixed in git)
;; So mark it with SKIP_KNOWN_BUGS like the others.
;; Presumably it wasn't known at the time of release ...
;; (It is strange that they release software which they know to have bugs)
(("testing \"grep -w \\^str doesn't match str not at the beginning\"")
"test x\"$SKIP_KNOWN_BUGS\" = x\"\" && testing \"grep -w ^str doesn't match str not at the beginning\""))
;; This test cannot possibly pass.
;; It is trying to test that "which ls" returns "/bin/ls" when PATH is not set.
@ -83,24 +83,23 @@ (define-public busybox
;; "V=1"
"SKIP_KNOWN_BUGS=1"
"SKIP_INTERNET_TESTS=1"
"check")))
(alist-replace
'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(zero?
(system* "make"
(string-append "CONFIG_PREFIX=" out)
"install"))))
%standard-phases)))))
"check"))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(zero?
(system* "make"
(string-append "CONFIG_PREFIX=" out)
"install"))))))))
(native-inputs `(("perl" ,perl) ; needed to generate the man pages (pod2man)
;; The following are needed by the tests.
("inetutils" ,inetutils)
("which" ,(@ (gnu packages base) which))
("zip" ,zip)))
(synopsis "Many common UNIX utilities in a single executable")
(description "BusyBox combines tiny versions of many common UNIX utilities
into a single small executable. It provides a fairly complete environment for
any small or embedded system.")
(home-page "http://www.busybox.net")
(home-page "https://www.busybox.net")
;; Some files are gplv2+
(license gpl2)))

11
gnu/packages/ccache.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -28,7 +29,7 @@ (define-module (gnu packages ccache)
(define-public ccache
(package
(name "ccache")
(version "3.2.4")
(version "3.2.5")
(source
(origin
(method url-fetch)
@ -36,16 +37,18 @@ (define-public ccache
version ".tar.xz"))
(sha256
(base32
"0pga3hvd80f2p7mz88jmmbwzxh4vn5ihyjx5f6na8y2fclzsjg8w"))))
"11db1g109g0g5si0s50yd99ja5f8j4asxb081clvx78r9d9i2w0i"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl))) ;for test.sh
(native-inputs `(("perl" ,perl) ;for test.sh
("which" ,(@ (gnu packages base) which))))
(inputs `(("zlib" ,zlib)))
(arguments
'(#:phases (alist-cons-before
'check 'setup-tests
(lambda _
(substitute* '("test/test_hashutil.c" "test.sh")
(("#!/bin/sh") (string-append "#!" (which "sh"))))
(("#!/bin/sh") (string-append "#!" (which "sh")))
(("which") (which "which")))
#t)
%standard-phases)))
(home-page "https://ccache.samba.org/")

6
gnu/packages/cdrom.scm
View file

@ -130,14 +130,14 @@ (define-public libcdio-paranoia
(define-public xorriso
(package
(name "xorriso")
(version "1.4.2")
(version "1.4.4")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/xorriso/xorriso-"
version ".tar.gz"))
(sha256
(base32
"1cq4a0904lnz6nygbgarnlq49cz4qnfdyvz90s3nfk5as7gbwhr8"))))
"1izv8dvwacyh432vv1rm6lyjrq0v205kyakfra6iwa146c9m9fgr"))))
(build-system gnu-build-system)
(inputs
`(("acl" ,acl)
@ -145,7 +145,7 @@ (define-public xorriso
("bzip2" ,bzip2)
("zlib" ,zlib)
("libcdio" ,libcdio)))
(home-page "http://www.gnu.org/software/xorriso/")
(home-page "https://www.gnu.org/software/xorriso/")
(synopsis "Create, manipulate, burn ISO-9660 filesystems")
(description
"GNU Xorriso is a tool for copying files to and from ISO 9660 Rock

37
gnu/packages/compression.scm
View file

@ -10,6 +10,7 @@
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -796,3 +797,39 @@ (define-public cabextract
(description "Extracts files out of Microsoft Cabinet (.cab) archives")
;; Some source files specify gpl2+, lgpl2+, however COPYING is gpl3.
(license license:gpl3+)))
(define-public xdelta
(package
(name "xdelta")
(version "3.1.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/jmacd/xdelta/archive/v"
version ".tar.gz"))
(sha256
(base32
"17g2pbbqy6h20qgdjq7ykib7kg5ajh8fwbsfgyjqg8pwg19wy5bm"))
(file-name (string-append name "-" version ".tar.gz"))
(snippet
;; This file isn't freely distributable and has no effect on building.
'(delete-file "xdelta3/draft-korn-vcdiff.txt"))))
(build-system gnu-build-system)
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)))
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'enter-build-directory
(lambda _ (chdir "xdelta3")))
(add-before 'configure 'autoconf
(lambda _ (zero? (system* "autoreconf" "-vfi")))))))
(home-page "http://xdelta.com")
(synopsis "Delta encoder for binary files")
(description "xdelta encodes only the differences between two binary files
using the VCDIFF algorithm and patch file format described in RFC 3284. It can
also be used to apply such patches. xdelta is similar to @command{diff} and
@command{patch}, but is not limited to plain text and does not generate
human-readable output.")
(license license:asl2.0)))

11
gnu/packages/conkeror.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com>
;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 John J. Foerch <jjfoerch@earthlink.net>
;;;
;;; This file is part of GNU Guix.
;;;
@ -28,16 +29,16 @@ (define-module (gnu packages conkeror)
(define-public conkeror
(package
(name "conkeror")
(version "1.0pre1.20150730")
(version "1.0.3")
(source (origin
(method url-fetch)
(uri
(string-append "http://repo.or.cz/w/conkeror.git/snapshot/"
"a1f7e879b129df5cf14ea4ce80a9c1407380ed58"
".tar.gz")) ; tag: debian-1.0--pre-1+git150730-1
(string-append "http://repo.or.cz/conkeror.git/snapshot/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1q45hc30733gz3ca2ixvw0rzzcbi7rlay7gx7kvzjv17a030nyk0"))))
"0ybmincxw3msnrfpby9gnckbq2x94c7fra2m66zham54cjc7mav3"))))
(build-system gnu-build-system)
(inputs `(("icecat" ,icecat)))
(arguments

90
gnu/packages/crypto.scm
View file

@ -3,6 +3,7 @@
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -22,14 +23,18 @@
(define-module (gnu packages crypto)
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages boost)
#:use-module (gnu packages gettext)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages libbsd)
#:use-module (gnu packages linux)
#:use-module (gnu packages nettle)
#:use-module (gnu packages password-utils)
#:use-module (gnu packages perl)
#:use-module (gnu packages readline)
#:use-module (gnu packages serialization)
#:use-module (gnu packages tls)
#:use-module (guix licenses)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu))
@ -54,7 +59,7 @@ (define-public libsodium
(description
"Sodium is a new easy-to-use high-speed software library for network
communication, encryption, decryption, signatures, etc.")
(license isc)
(license license:isc)
(home-page "http://libsodium.org")))
(define-public signify
@ -91,10 +96,11 @@ (define-public signify
(home-page "https://github.com/aperezdc/signify")
;; This package includes third-party code that was originally released under
;; various non-copyleft licenses. See the source files for clarification.
(license (list bsd-3 bsd-4 expat isc public-domain
(non-copyleft "file://base64.c"
"See base64.c in the distribution for
the license from IBM.")))))
(license (list license:bsd-3 license:bsd-4 license:expat license:isc
license:public-domain (license:non-copyleft
"file://base64.c"
"See base64.c in the distribution for
the license from IBM.")))))
(define-public opendht
@ -146,4 +152,74 @@ (define-public opendht
(description "OpenDHT is a Distributed Hash Table (DHT) library. It may
be used to manage peer-to-peer network connections as needed for real time
communication.")
(license gpl3)))
(license license:gpl3)))
(define rlog
(package
(name "rlog")
(version "1.4")
(source
(origin
(method url-fetch)
(uri
(string-append "http://rlog.googlecode.com/files/rlog-"
version ".tar.gz"))
(sha256
(base32
"0y9zg0pd7vmnskwac1qdyzl282z7kb01nmn57lsg2mjdxgnywf59"))))
(build-system gnu-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(add-before 'configure 'patch-/bin/sh
(lambda _
(substitute* "docs/Makefile.in"
(("/bin/sh") "sh")))))))
(home-page "http://www.arg0.net/rlog")
(synopsis "Flexible message logging library for EncFS")
(description
"RLog provides message logging for EncFS. It is no longer maintained.")
(license license:lgpl2.1+)))
(define-public encfs
(package
(name "encfs")
(version "1.8.1")
(source
(origin
(method url-fetch)
(uri
(string-append "https://github.com/vgough/encfs/releases/download/v"
version "/encfs-" version ".tar.gz"))
(sha256
(base32
"1lfmcsk187qr6ahy8c8959p7jrk9d5rd9kcsx572850ca3zmf0la"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--with-boost-serialization=boost_wserialization"
"--with-boost-filesystem=boost_filesystem")
#:phases (modify-phases %standard-phases
(add-before 'configure 'autoconf
(lambda _
(zero? (system* "autoreconf" "-vfi")))))))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("gettext" ,gnu-gettext)
("libtool" ,libtool)
("perl" ,perl)
("pkg-config" ,pkg-config)))
(inputs
`(("boost" ,boost)
("fuse" ,fuse)
("openssl" ,openssl)
("rlog" ,rlog)))
(home-page "https://vgough.github.io/encfs")
(synopsis "Encrypted virtual file system")
(description
"EncFS creates a virtual encrypted file system in user-space. Each file
created under an EncFS mount point is stored as a separate encrypted file on
the underlying file system. Like most encrypted file systems, EncFS is meant
to provide security against off-line attacks, such as a drive falling into
the wrong hands.")
(license (list license:lgpl3+ ;encfs library
license:gpl3+)))) ;command-line tools

2
gnu/packages/databases.scm
View file

@ -8,7 +8,7 @@
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.

22
gnu/packages/datastructures.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -70,3 +71,24 @@ (define-public sparsehash
and time-efficient for good hash functions.")
(home-page "https://github.com/sparsehash/sparsehash")
(license license:bsd-3)))
(define-public ssdeep
(package
(name "ssdeep")
(version "2.13")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/ssdeep/"
name "-" version "/"
name "-" version ".tar.gz"))
(sha256
(base32
"1igqy0j7jrklb8fdlrm6ald4cyl1fda5ipfl8crzyl6bax2ajk3f"))))
(build-system gnu-build-system)
(home-page "http://ssdeep.sourceforge.net")
(synopsis "Context-triggered piecewise hashing algorithm")
(description "ssdeep computes and matches context triggered piecewise
hashes (CTPH), also called fuzzy checksums. It can identify similar files
that have sequences of identical bytes in the same order, even though bytes
in between these sequences may be different in both content and length.")
(license license:gpl2+)))

46
gnu/packages/disk.scm
View file

@ -2,8 +2,9 @@
;;; Copyright © 2012, 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2015 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -25,9 +26,12 @@ (define-module (gnu packages disk)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages gettext)
#:use-module (gnu packages linux)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages popt)
#:use-module (gnu packages python)
#:use-module (gnu packages readline)
#:use-module (gnu packages guile)
@ -97,6 +101,46 @@ (define-public fdisk
tables, and it understands a variety of different formats.")
(license gpl3+)))
(define-public gptfdisk
(package
(name "gptfdisk")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/gptfdisk/gptfdisk/"
version "/" name "-" version ".tar.gz"))
(sha256
(base32
"1izazbyv5n2d81qdym77i8mg9m870hiydmq4d0s51npx5vp8lk46"))))
(build-system gnu-build-system)
(inputs
`(("gettext" ,gnu-gettext)
("ncurses" ,ncurses)
("popt" ,popt)
("util-linux" ,util-linux))) ; libuuid
(arguments
`(#:test-target "test"
#:phases
(modify-phases %standard-phases
;; no configure script
(delete 'configure)
;; no install target
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
(install-file "gdisk" bin)
(install-file "sgdisk" bin)
(install-file "cgdisk" bin)
(install-file "fixparts" bin)))))))
(home-page "http://www.rodsbooks.com/gdisk/")
(synopsis "Low-level GPT disk partitioning and formatting")
(description "GPT fdisk (aka gdisk) is a text-mode partitioning tool that
works on Globally Unique Identifier (GUID) Partition Table (GPT) disks, rather
than on the more common (through 2009) Master Boot Record (MBR) partition
tables.")
(license gpl2)))
(define-public ddrescue
(package
(name "ddrescue")

38
gnu/packages/documentation.scm
View file

@ -2,6 +2,7 @@
;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -27,9 +28,11 @@ (define-module (gnu packages documentation)
#:use-module (gnu packages)
#:use-module (gnu packages python)
#:use-module (gnu packages bison)
#:use-module (gnu packages docbook)
#:use-module (gnu packages flex)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
#:use-module (gnu packages perl)
#:use-module (gnu packages xml)
#:autoload (gnu packages zip) (unzip))
@ -115,3 +118,38 @@ (define-public doc++
brwosing. The documentation is extracted directly from the C/C++/IDL source
or Java class files.")
(license gpl2+)))
(define-public scrollkeeper
(package
(name "scrollkeeper")
(version "0.3.14")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/scrollkeeper/scrollkeeper-"
version ".tar.gz"))
(sha256
(base32 "1bfxwxc1ngh11v36z899sz9qam366r050fhkyb5adv65lb1x62sa"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "--with-xml-catalog="
(assoc-ref %build-inputs "docbook-xml")
"/xml/dtd/docbook/catalog.xml"))))
(inputs
`(("perl" ,perl)
("libxml2" ,libxml2)
("libxslt" ,libxslt)
;; The configure script checks for either version 4.2 or 4.1.2.
("docbook-xml" ,docbook-xml-4.2)))
(native-inputs
`(("intltool" ,intltool)))
(home-page "http://scrollkeeper.sourceforge.net/")
(synopsis "Open Documentation Cataloging Project")
(description "ScrollKeeper is a cataloging system for documentation on open
systems. It manages documentation metadata as specified by the Open Source
Metadata Framework and provides a simple API to allow help browsers to find,
sort, and search the document catalog. It will also be able to communicate
with catalog servers on the Net to search for documents which are not on the
local system.")
(license lgpl2.1+)))

4
gnu/packages/ebook.scm
View file

@ -61,7 +61,7 @@ (define-public chmlib
(define-public calibre
(package
(name "calibre")
(version "2.58.0")
(version "2.62.0")
(source
(origin
(method url-fetch)
@ -70,7 +70,7 @@ (define-public calibre
version ".tar.xz"))
(sha256
(base32
"0npqvfjqj1vwa7nmnsyd4d30z40brydw275ldf1jankrp6dr9dyd"))
"15qskfsdg3fy9cpw1m3mccwgn45366yn7lci5kim0fdzpw9pnkna"))
;; Remove non-free or doubtful code, see
;; https://lists.gnu.org/archive/html/guix-devel/2015-02/msg00478.html
(modules '((guix build utils)))

535
gnu/packages/emacs.scm
View file

@ -5,7 +5,6 @@
;;; Copyright © 2014, 2015, 2016 Alex Kost <alezost@gmail.com>
;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2016 Chris Marusich <cmmarusich@gmail.com>
;;; Copyright © 2015, 2016 Christopher Allan Webber <cwebber@dustycloud.org>
;;; Copyright © 2016 humanitiesNerd <catonano@gmail.com>
@ -47,6 +46,7 @@ (define-module (gnu packages emacs)
#:use-module (gnu packages gtk)
#:use-module (gnu packages gnome)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tls)
#:use-module (gnu packages pkg-config)
@ -68,6 +68,7 @@ (define-module (gnu packages emacs)
#:use-module (gnu packages perl)
#:use-module (gnu packages pdf)
#:use-module (gnu packages scheme)
#:use-module (gnu packages statistics)
#:use-module (gnu packages xiph)
#:use-module (gnu packages mp3)
#:use-module (guix utils)
@ -554,6 +555,31 @@ (define-public magit-svn
support for Git-SVN.")
(license license:gpl3+)))
(define-public emacs-magit-popup
(package
(name "emacs-magit-popup")
(version (package-version magit))
(source (origin
(method url-fetch)
(uri (string-append
"https://raw.githubusercontent.com/magit/magit/"
version "/lisp/magit-popup.el"))
(file-name (string-append "magit-popup-" version ".el"))
(sha256
(base32
"144nl7j5mn86ccan6qxgg40bsxpkbc83vwnhd5y657gqki74972r"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-dash" ,emacs-dash)))
(home-page "https://github.com/magit/magit")
(synopsis "Define prefix-infix-suffix command combos")
(description
"This library implements a generic interface for toggling switches and
setting options and then invoking an Emacs command which does something with
these arguments. The prototypical use is for the command to call an external
process, passing on the arguments as command line arguments.")
(license license:gpl3+)))
(define-public haskell-mode
(package
(name "haskell-mode")
@ -664,7 +690,7 @@ (define-public let-alist
(define-public flycheck
(package
(name "emacs-flycheck")
(version "0.23")
(version "28")
(source (origin
(method url-fetch)
(uri (string-append
@ -672,11 +698,12 @@ (define-public flycheck
version "/flycheck-" version ".tar"))
(sha256
(base32
"1n2cifzsl5dbv42l82bi3y1vk6q33msi8dd4bj7b9nvnl9jfjj5b"))))
"1yjxivk11d7w39zfhj2xr4h6xhwx1aj6yhyzd63rjrad7xpjfl86"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-dash" ,emacs-dash)
("emacs-let-alist" ,let-alist)))
("emacs-let-alist" ,let-alist)
("emacs-seq" ,emacs-seq)))
(home-page "https://www.flycheck.org")
(synopsis "On-the-fly syntax checking")
(description
@ -821,7 +848,7 @@ (define-public emacs-wget
(define-public emms
(package
(name "emms")
(name "emacs-emms")
(version "4.1")
(source (origin
(method url-fetch)
@ -933,6 +960,29 @@ (define-public emms
(home-page "http://www.gnu.org/software/emms/")
(license license:gpl3+)))
(define-public emacs-emms-player-mpv
(package
(name "emacs-emms-player-mpv")
(version "0.0.8")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/dochang/emms-player-mpv/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"01wj410dpx25b3i8781i2j9c6nlvzvvphy9qgh7zfpmyz6a3wsm4"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emms" ,emms)))
(home-page "https://github.com/dochang/emms-player-mpv/")
(synopsis "Mpv support for EMMS")
(description
"This package provides an EMMS player that uses mpv. It supports pause
and seeking.")
(license license:gpl3+)))
;;;
;;; Miscellaneous.
@ -1225,6 +1275,317 @@ (define-public emacs-f
files and directories.")
(license license:gpl3+)))
(define-public emacs-el-mock
(package
(name "emacs-el-mock")
(version "1.25.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/rejeep/el-mock.el/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"16xw94n58xxn3zvgyj72bmzs0k5lkvswjmzs79ws9n7rzdivb38b"))))
(build-system emacs-build-system)
(home-page "http://github.com/rejeep/el-mock.el")
(synopsis "Tiny mock and stub framework in Emacs Lisp")
(description
"Emacs Lisp Mock is a library for mocking and stubbing using readable
syntax. Most commonly Emacs Lisp Mock is used in conjunction with Emacs Lisp
Expectations, but it can be used in other contexts.")
(license license:gpl3+)))
(define-public emacs-espuds
(package
(name "emacs-espuds")
(version "0.3.3")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/ecukes/espuds/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0xv551376pbmh735a3zjwc9z4qdx6ngj1vpq3xqjpn0a1rwjyn4k"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-s" ,emacs-s)
("emacs-dash" ,emacs-dash)
("emacs-f" ,emacs-f)))
(home-page "http://github.com/ecukes/espuds")
(synopsis "Common step definitions for Ecukes")
(description "Espuds is a collection of the most commonly used step
definitions for testing with the Ecukes framework.")
(license license:gpl3+)))
(define-public emacs-expand-region
(package
(name "emacs-expand-region")
(version "0.10.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/magnars/expand-region.el"
"/archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1zfiaqyb3zqiyqjkpqsjw660j09805nqsg25q6ars2h8gs0rnvxb"))))
(build-system emacs-build-system)
(home-page "https://github.com/magnars/expand-region.el")
(synopsis "Increase selected region by semantic units")
(description
"Expand region increases the selected region by semantic units. Just
keep pressing the key until it selects what you want. There's also
@code{er/contract-region} if you expand too far.")
(license license:gpl3+)))
(define-public emacs-fill-column-indicator
(package
(name "emacs-fill-column-indicator")
(version "1.81")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/alpaker/Fill-Column-Indicator"
"/archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1xwyqbjbbicmvhlb85vg4j5snwy1vd7rfk89ws4viws5ljkhhyg8"))))
(build-system emacs-build-system)
(home-page "https://www.emacswiki.org/emacs/FillColumnIndicator")
(synopsis "Graphically indicate the fill column")
(description
"Fill-column-indicator graphically indicates the location of the fill
column by drawing a thin line down the length of the editing window.")
(license license:gpl3+)))
(define-public emacs-znc
(package
(name "emacs-znc")
(version "0.0.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://marmalade-repo.org/packages/znc-"
version ".el"))
(sha256
(base32
"1d8lqvybgyazin5z0g1c4l3rg1vzrrvf0saqs53jr1zcdg0lianh"))))
(build-system emacs-build-system)
(home-page "https://github.com/sshirokov/ZNC.el")
(synopsis "Make ERC and ZNC get along better")
(description
"This is a thin wrapper around @code{erc} that enables one to use the ZNC
IRC bouncer with ERC.")
(license license:expat)))
(define-public emacs-shut-up
(package
(name "emacs-shut-up")
(version "0.3.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/cask/shut-up/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"09kzrjdkb569iviyg7ydwq44yh84m3f9hkl7jizfrlk0w4gz67d1"))))
(build-system emacs-build-system)
(home-page "https://github.com/cask/shut-up")
(synopsis "Silence Emacs")
(description "This package silences most output of Emacs when running an
Emacs shell script.")
(license license:expat)))
(define-public emacs-undercover
(package
(name "emacs-undercover")
(version "0.6.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/sviridov/undercover.el/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0f48fi0xnbsqs382rgh85m9mq1wdnr0yib7as9xhwzvq0hsr5m0a"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-dash" ,emacs-dash)
("emacs-shut-up" ,emacs-shut-up)))
(home-page "https://github.com/sviridov/undercover.el")
(synopsis "Test coverage library for Emacs Lisp")
(description
"Undercover is a test coverage library for software written in Emacs
Lisp.")
(license license:expat)))
(define-public emacs-paren-face
(package
(name "emacs-paren-face")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/tarsius/paren-face/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0y4qrhxa9332vsvr999jg7qj1ymnfgwpf591yi4a4jgg90pm7qnn"))))
(build-system emacs-build-system)
(home-page "http://github.com/tarsius/paren-face")
(synopsis "Face for parentheses in lisp modes")
(description
"This library defines a face named @code{parenthesis} used just for
parentheses. The intended purpose of this face is to make parentheses less
visible in Lisp code by dimming them. Lispers probably don't need to be
constantly made aware of the existence of the parentheses. Dimming them might
be even more useful for people new to lisp who have not yet learned to
subconsciously blend out the parentheses.")
(license license:gpl3+)))
(define-public emacs-page-break-lines
(package
(name "emacs-page-break-lines")
(version "0.11")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/purcell/page-break-lines/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1zzhziq5kbrm9rxk30kx2glz455fp1blqxg8cpcf6l8xl3w8z4pg"))))
(build-system emacs-build-system)
(home-page "https://github.com/purcell/page-break-lines")
(synopsis "Display page breaks as tidy horizontal lines")
(description
"This library provides a global mode which displays form feed characters
as horizontal rules.")
(license license:gpl3+)))
(define-public emacs-simple-httpd
(package
(name "emacs-simple-httpd")
(version "1.4.6")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/skeeto/emacs-web-server/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"01r7h3imnj4qx1m53a2wjafvbylcyz5f9r2rg2cs7ky3chlg220r"))))
(build-system emacs-build-system)
(home-page "https://github.com/skeeto/emacs-http-server")
(synopsis "HTTP server in pure Emacs Lisp")
(description
"This package provides a simple HTTP server written in Emacs Lisp to
serve files and directory listings.")
(license license:unlicense)))
(define-public emacs-skewer-mode
(package
(name "emacs-skewer-mode")
(version "1.6.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/skeeto/skewer-mode/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"07jpz374j0j964szy3zznrkyja2kpdl3xa87wh7349mzxivqxdx0"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-simple-httpd" ,emacs-simple-httpd)
("emacs-js2-mode" ,emacs-js2-mode)))
(home-page "https://github.com/skeeto/skewer-mode")
(synopsis "Live web development in Emacs")
(description
"Skewer-mode provides live interaction with JavaScript, CSS, and HTML in
a web browser. Expressions are sent on-the-fly from an editing buffer to be
evaluated in the browser, just like Emacs does with an inferior Lisp process
in Lisp modes.")
(license license:unlicense)))
(define-public emacs-rich-minority
(package
(name "emacs-rich-minority")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/Malabarba/rich-minority/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1l0cb0q7kyi88nwfqd542psnkgwnjklpzc5rx32gzd3lkwkrbr8v"))))
(build-system emacs-build-system)
(home-page "https://github.com/Malabarba/rich-minority")
(synopsis "Clean-up and beautify the list of minor modes")
(description
"This Emacs package hides and/or highlights minor modes in the
mode-line.")
(license license:gpl2+)))
(define-public emacs-smart-mode-line
(package
(name "emacs-smart-mode-line")
(version "2.10.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/Malabarba/smart-mode-line/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0i9wajabrrsjzwd842q0m2611kf0q31p9hg1pdj81177gynkw8l8"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-rich-minority" ,emacs-rich-minority)))
(home-page "http://github.com/Malabarba/smart-mode-line")
(synopsis "Color-coded smart mode-line.")
(description
"Smart Mode Line is a mode-line theme for Emacs. It aims to be easy to
read from small to large monitors by using colors, a prefix feature, and smart
truncation.")
(license license:gpl2+)))
(define-public emacs-shell-switcher
(package
(name "emacs-shell-switcher")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/DamienCassou/shell-switcher"
"/archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1c23mfkdqz2g9rixd9smm323vzlvhzz3ng34ambcqjfq309qb2nz"))))
(build-system emacs-build-system)
(home-page "https://github.com/DamienCassou/shell-switcher")
(synopsis "Provide fast switching between shell buffers")
(description
"This package provides commands to quickly switch between shell buffers.")
(license license:gpl3+)))
(define-public emacs-ob-ipython
(package
(name "emacs-ob-ipython")
@ -1482,10 +1843,34 @@ (define-public emacs-constants
constants and units into an Emacs buffer.")
(license license:gpl2+)))
(define-public emacs-tagedit
(package
(name "emacs-tagedit")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/magnars/tagedit/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1apfnann4qklfdsmdi7icjsj18x7gwx8d83iqr4z25clszz95xfq"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-s" ,emacs-s)
("emacs-dash" ,emacs-dash)))
(home-page "https://github.com/magnars/tagedit")
(synopsis "Some paredit-like features for html-mode")
(description
"This package provides a collection of paredit-like functions for editing
in @code{html-mode}.")
(license license:gpl3+)))
(define-public emacs-slime
(package
(name "emacs-slime")
(version "2.15")
(version "2.18")
(source
(origin
(file-name (string-append name "-" version ".tar.gz"))
@ -1495,7 +1880,7 @@ (define-public emacs-slime
version ".tar.gz"))
(sha256
(base32
"0l2z6l2xm78mhh0nczkrmzh2ddb1n911ij9xb6q40zwvx4f8blds"))))
"146avwbwr6mw0nmgyihx8gkr0mv6al7a73igzxvysj62000cqvlj"))))
(build-system emacs-build-system)
(native-inputs
`(("texinfo" ,texinfo)))
@ -1680,6 +2065,30 @@ (define-public emacs-zenburn-theme
It is built on top of the custom theme support in Emacs 24 or later.")
(license license:gpl3+)))
(define-public emacs-solarized-theme
(package
(name "emacs-solarized-theme")
(version "1.2.2")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/bbatsov/solarized-emacs/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1ha3slc6d9wi9ilkhmwrzkvf308n6ph7b0k69pk369s9304awxzx"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-dash" ,emacs-dash)
("emacs-f" ,emacs-f)
("emacs-s" ,emacs-s)))
(home-page "http://github.com/bbatsov/solarized-emacs")
(synopsis "Port of the Solarized theme for Emacs")
(description
"Solarized for Emacs is a port of the Solarized theme for Vim. This
package provides a light and a dark variant.")
(license license:gpl3+)))
(define-public emacs-smartparens
(package
(name "emacs-smartparens")
@ -1709,6 +2118,55 @@ (define-public emacs-smartparens
well as completely new features.")
(license license:gpl3+)))
(define-public emacs-hl-todo
(package
(name "emacs-hl-todo")
(version "1.7.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://raw.githubusercontent.com/tarsius/hl-todo/"
version "/hl-todo.el"))
(sha256
(base32
"18zydm43zajlglhgr0bhdkd4pln27amd063k2ql6p1mvyam3j8ia"))))
(build-system emacs-build-system)
(home-page "https://github.com/tarsius/hl-todo")
(synopsis "Emacs mode to highlight TODO and similar keywords")
(description
"This package provides an Emacs mode to highlight TODO and similar
keywords in comments and strings. This package also provides commands for
moving to the next or previous keyword and to invoke @code{occur} with a
regexp that matches all known keywords.")
(license license:gpl3+)))
(define-public emacs-perspective
(package
(name "emacs-perspective")
(version "1.12")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/nex3/perspective-el/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"078ahh0kmhdylq5ib9c81c76kz1n02xwc83pm729d00i84ibviic"))))
(build-system emacs-build-system)
(home-page "http://github.com/nex3/perspective-el")
(synopsis "Switch between named \"perspectives\"")
(description
"This package provides tagged workspaces in Emacs, similar to workspaces in
windows managers such as Awesome and XMonad. @code{perspective.el} provides
multiple workspaces (or \"perspectives\") for each Emacs frame. Each
perspective is composed of a window configuration and a set of buffers.
Switching to a perspective activates its window configuration, and when in a
perspective only its buffers are available by default.")
;; This package is released under the same license as Emacs (GPLv3+) or
;; the Expat license.
(license license:gpl3+)))
(define-public emacs-hydra
(package
(name "emacs-hydra")
@ -2021,6 +2479,65 @@ (define-public emacs-better-defaults
agree upon.")
(license license:gpl3+)))
(define-public emacs-eprime
(let ((commit "17a481af26496be91c07139a9bfc05cfe722506f"))
(package
(name "emacs-eprime")
(version (string-append "20140513-" (string-take commit 7)))
(source (origin
(method url-fetch)
(uri (string-append "https://raw.githubusercontent.com"
"/AndrewHynes/eprime-mode/"
commit "/eprime-mode.el"))
(file-name (string-append "eprime-" version ".el"))
(sha256
(base32
"0v68lggkyq7kbcr9zyi573m2g2x251xy3jadlaw8kx02l8krwq8d"))))
(build-system emacs-build-system)
(home-page "https://github.com/AndrewHynes/eprime-mode")
(synopsis "E-prime checking mode for Emacs")
(description "This package provides an E-prime checking mode for Emacs
that highlights non-conforming text. The subset of the English language called
E-Prime forbids the use of the \"to be\" form to strengthen your writing.")
(license license:gpl3+))))
(define-public emacs-ess
(package
(name "emacs-ess")
(version "16.04")
(source (origin
(method url-fetch)
(uri (string-append "http://ess.r-project.org/downloads/ess/ess-"
version ".tgz"))
(sha256
(base32
"0w7mbbajn377gdmvnd21mpyr368b2ia46gq6cb99y4y5rspf9pcg"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There is no test suite.
#:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-before 'build 'more-shebang-patching
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "Makeconf"
(("SHELL = /bin/sh")
(string-append "SHELL = " (which "sh")))))))))
(inputs
`(("emacs" ,emacs-minimal)
("r" ,r)))
(native-inputs
`(("perl" ,perl)
("texinfo" ,texinfo)
("texlive" ,texlive)))
(home-page "http://ess.r-project.org/")
(synopsis "Emacs mode for statistical analysis programs")
(description "Emacs Speaks Statistics (ESS) is an add-on package for GNU
Emacs. It is designed to support editing of scripts and interaction with
various statistical analysis programs such as R and OpenBUGS.")
(license license:gpl2+)))
(define-public emacs-smex
(package
(name "emacs-smex")
@ -2273,7 +2790,7 @@ (define-public emacs-web-mode
(define-public emacs-helm
(package
(name "emacs-helm")
(version "1.9.6")
(version "1.9.8")
(source (origin
(method url-fetch)
(uri (string-append
@ -2282,7 +2799,7 @@ (define-public emacs-helm
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0fc897rwf1fm2m7jrsikkgcyzhngfcysxfmzchpwzfj6v9sb5rl9"))))
"019dpzr6l83k1fgxn40aqxjvrpz4dl5d9vi7fc5wjnifmxaqxia6"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emacs-async" ,emacs-async)

27
gnu/packages/engineering.scm
View file

@ -58,7 +58,7 @@ (define-module (gnu packages engineering)
(define-public librecad
(package
(name "librecad")
(version "2.0.11")
(version "2.1.1")
(source (origin
(method url-fetch)
(uri (string-append
@ -67,7 +67,7 @@ (define-public librecad
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0jda23qspziph6fwgq1q3nmnllbgn9kwfpjylv1f0wa7c5l85gh5"))))
"132vv9pzbx64zmbnikyg06d4j47yzlmwi4mywxnd9gkaik4yd2kb"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@ -108,26 +108,25 @@ (define-public librecad
(define-public geda-gaf
(package
(name "geda-gaf")
(version "1.8.2")
(version "1.9.2")
(source (origin
(method url-fetch)
(uri (string-append
"http://ftp.geda-project.org/geda-gaf/stable/v"
"http://ftp.geda-project.org/geda-gaf/unstable/v"
(version-major+minor version) "/"
version "/geda-gaf-" version ".tar.gz"))
(sha256
(base32
"08dpa506xk4gjbbi8vnxcb640wq4ihlgmhzlssl52nhvxwx7gx5v"))))
"14mk45pfz11v54q66gafw2l68n1p5ssvvjmdm8ffgc8x1w5ajfrz"))))
(build-system gnu-build-system)
(arguments
'(#:phases
;; tests require a writable HOME
(alist-cons-before
'check 'set-home
(lambda _
(setenv "HOME" (getenv "TMPDIR")))
%standard-phases
)
(modify-phases %standard-phases
;; tests require a writable HOME
(add-before 'check 'set-home
(lambda _
(setenv "HOME" (getenv "TMPDIR"))
#t)))
#:configure-flags
(let ((pcb (assoc-ref %build-inputs "pcb")))
(list (string-append "--with-pcb-datadir=" pcb "/share")
@ -229,10 +228,6 @@ (define-public fastcap
(snippet
;; Remove a non-free file.
'(delete-file "doc/psfig.sty"))
(modules '((guix build utils)
(guix build download)
(guix ftp-client)))
(imported-modules modules)
(patches (search-patches "fastcap-mulSetup.patch"
"fastcap-mulGlobal.patch"))))
(build-system gnu-build-system)

17
gnu/packages/enlightenment.scm
View file

@ -47,7 +47,6 @@ (define-module (gnu packages enlightenment)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
#:use-module (gnu packages tls)
#:use-module (gnu packages valgrind)
#:use-module (gnu packages video)
#:use-module (gnu packages xorg))
@ -93,7 +92,6 @@ (define-public efl
("mesa" ,mesa)
("printproto" ,printproto)
("scrnsaverproto" ,scrnsaverproto)
("valgrind" ,valgrind)
("xextproto" ,xextproto)
("xinput" ,xinput)
("xpr" ,xpr)
@ -118,12 +116,11 @@ (define-public efl
(arguments
`(#:configure-flags '("--disable-silent-rules")
#:phases
(alist-cons-before
'configure 'patch-config-files
(lambda _
(substitute* "po/Makefile.in.in"
(("/bin/sh") (which "bash"))))
%standard-phases)))
(modify-phases %standard-phases
(add-before 'configure 'patch-config-files
(lambda _
(substitute* "po/Makefile.in.in"
(("/bin/sh") (which "bash"))))))))
(home-page "http://www.enlightenment.org")
(synopsis "Enlightenment Foundation Libraries")
(description
@ -273,7 +270,7 @@ (define-public rage
(define-public enlightenment
(package
(name "enlightenment")
(version "0.20.9")
(version "0.21.0")
(source (origin
(method url-fetch)
(uri
@ -281,7 +278,7 @@ (define-public enlightenment
name "/" name "-" version ".tar.xz"))
(sha256
(base32
"1gniy7i3mg3q9cgqf004lvnv397yncdr2b7w1gzj69bvv7a2lyfv"))))
"0p85dmk9ysbf9y7vlc92z7495mh9l860xj3s8pspy9mscv3dnwg9"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--enable-mount-eeze")))

5
gnu/packages/flashing-tools.scm
View file

@ -90,12 +90,11 @@ (define-public avrdude
version ".tar.gz"))
(sha256
(base32
"0frxg0q09nrm95z7ymzddx7ysl77ilfbdix1m81d9jjpiv5bm64y"))
(patches (search-patches "avrdude-fix-libusb.patch"))))
"0frxg0q09nrm95z7ymzddx7ysl77ilfbdix1m81d9jjpiv5bm64y"))))
(build-system gnu-build-system)
(inputs
`(("libelf" ,libelf)
("libusb" ,libusb)
("libusb" ,libusb-compat)
("libftdi" ,libftdi)))
(native-inputs
`(("bison" ,bison)

9
gnu/packages/fonts.scm
View file

@ -6,7 +6,8 @@
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2015, 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;; Copyright © 2016 Jookia <166291@gmail.com>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Dmitry Nikolaev <cameltheman@gmail.com>
@ -599,15 +600,15 @@ (define-public font-anonymous-pro
(define-public font-gnu-unifont
(package
(name "font-gnu-unifont")
(version "8.0.01")
(version "9.0.01")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://gnu/unifont/unifont-8.0.01/unifont-"
"mirror://gnu/unifont/unifont-" version "/unifont-"
version ".tar.gz"))
(sha256
(base32
"176bzc2y3i49xavrmbyyz5lkqp0qq3bkj7rjrl197kib873by82b"))))
"14z4lx6asa94i73m19lsdgzqjn9xzi8320h3dafvzq9ima94pm9b"))))
(build-system gnu-build-system)
(outputs '("out" ; TrueType version
"pcf" ; PCF (bitmap) version

6
gnu/packages/freedesktop.scm
View file

@ -82,14 +82,14 @@ (define-public xdg-utils
(define-public libinput
(package
(name "libinput")
(version "1.3.0")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (string-append "https://freedesktop.org/software/libinput/"
name "-" version ".tar.xz"))
(sha256
(base32
"1sn1s1bz06fa49izqkqf519sjclsvhf42i6slzx1w5hx4vxpb2lr"))))
"085lcxy111j8r1lwyghsc6zrysqh0vg8xip5axxsdl8r8n3i1vvn"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@ -99,7 +99,7 @@ (define-public libinput
`(("libevdev" ,libevdev)
("mtdev" ,mtdev)
("libwacom" ,libwacom)))
(home-page "http://www.freedesktop.org/wiki/Software/libinput/")
(home-page "https://www.freedesktop.org/wiki/Software/libinput/")
(synopsis "Input devices handling library")
(description
"Libinput is a library to handle input devices for display servers and

38
gnu/packages/games.scm
View file

@ -17,7 +17,7 @@
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2016 Rodger Fox <thylakoid@openmailbox.org>
;;; Copyright © 2016 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;; Copyright © 2016 Albin Söderqvist <albin@fripost.org>
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
@ -2493,3 +2493,39 @@ (define-public starfighter
license:cc-by-sa3.0
license:cc0
license:public-domain))))
(define-public chromium-bsu
(package
(name "chromium-bsu")
(version "0.9.15.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/" name
"/Chromium B.S.U. source code/"
name "-" version ".tar.gz"))
(sha256
(base32
"01c4mki0rpz6wrqbf18fj4vd7axln5v0xqm80cyksbv63g04s6w6"))))
(build-system gnu-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(add-after 'set-paths 'set-sdl-paths
(lambda* (#:key inputs #:allow-other-keys)
(setenv "CPATH"
(string-append (assoc-ref inputs "sdl-union")
"/include/SDL"))
#t)))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs `(("glu" ,glu)
("quesoglc" ,quesoglc)
("sdl-union" ,(sdl-union (list sdl sdl-image sdl-mixer)))))
(home-page "http://chromium-bsu.sourceforge.net/")
(synopsis "Fast-paced, arcade-style, top-scrolling space shooter")
(description
"In this game you are the captain of the cargo ship Chromium B.S.U. and
are responsible for delivering supplies to the troops on the front line. Your
ship has a small fleet of robotic fighters which you control from the relative
safety of the Chromium vessel.")
;; Clarified Artistic License for everything but sound, which is covered
;; by the Expat License.
(license (list license:clarified-artistic license:expat))))

11
gnu/packages/gd.scm
View file

@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;;
@ -40,16 +40,21 @@ (define-public gd
;; Note: With libgd.org now pointing to github.com, genuine old
;; tarballs are no longer available. Notably, versions 2.0.x are
;; missing.
(version "2.2.1")
(version "2.2.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/libgd/libgd/releases/download/gd-"
version "/libgd-" version ".tar.xz"))
(patches (search-patches "gd-fix-test-on-i686.patch"
"gd-CVE-2016-5766.patch"
"gd-CVE-2016-6128.patch"
"gd-CVE-2016-6132.patch"
"gd-CVE-2016-6214.patch"))
(sha256
(base32
"0xmrqka1ggqgml84xbmkw1y0r0lg7qn657v5b1my8pry92p651vh"))))
"1311g5mva2xlzqv3rjqjc4jjkn5lzls4skvr395h633zw1n7b7s8"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))

36
gnu/packages/geeqie.scm
View file

@ -22,29 +22,33 @@ (define-module (gnu packages geeqie)
#:use-module (guix download)
#:use-module ((guix licenses) #:prefix l:)
#:use-module (guix build-system gnu)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages autotools)
#:use-module (gnu packages compression)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages glib)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages compression)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages xml))
(define-public exiv2 ; XXX: move elsewhere?
(package
(name "exiv2")
(version "0.23")
(version "0.25")
(source (origin
(method url-fetch)
(uri (string-append "http://www.exiv2.org/exiv2-"
version ".tar.gz"))
(sha256
(base32
"04bbg2cg6mgcyz435zamx37sp5zw44n2alb59ki1daz71f851yl1"))))
"197g6vgcpyf9p2cwn5p5hb1r714xsk1v4p96f5pv1z8mi9vzq2y8"))))
(build-system gnu-build-system)
(arguments '(#:tests? #f)) ; no `check' target
(propagated-inputs
`(("expat" ,expat) ("zlib" ,zlib)))
`(("expat" ,expat)
("zlib" ,zlib)))
(native-inputs
`(("intltool" ,intltool)))
(home-page "http://www.exiv2.org/")
(synopsis "Library and command-line utility to manage image metadata")
(description
@ -61,16 +65,23 @@ (define-public exiv2 ; XXX: move elsewhere?
(define-public geeqie
(package
(name "geeqie")
(version "1.1")
(version "1.3")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BestImageViewer/geeqie/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
"releases/download/v" version "/geeqie-"
version ".tar.xz"))
(sha256
(base32
"1kzy39z9505xkayyx7rjj2wda76xy3ch1s5z35zn8yli54ffhi2m"))))
"0gzc82sy66pbsmq7lnmq4y37zqad1zfwfls3ik3dmfm8s5nmcvsb"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'autogen
(lambda _
(setenv "NOCONFIGURE" "true")
(zero? (system* "sh" "autogen.sh")))))))
(inputs
`(;; ("libchamplain" ,libchamplain)
("lcms" ,lcms)
@ -78,7 +89,10 @@ (define-public geeqie
("libpng" ,libpng)
("gtk+" ,gtk+-2)))
(native-inputs
`(("intltool" ,intltool)
`(("autoconf" ,autoconf)
("automake" ,automake)
("glib" ,glib "bin") ; glib-gettextize
("intltool" ,intltool)
("pkg-config" ,pkg-config)))
(home-page "http://www.geeqie.org/")
(synopsis "Lightweight GTK+ based image viewer")

1
gnu/packages/gimp.scm
View file

@ -130,6 +130,7 @@ (define-public gimp
(uri (string-append "http://download.gimp.org/pub/gimp/v"
(version-major+minor version)
"/gimp-" version ".tar.bz2"))
(patches (search-patches "gimp-CVE-2016-4994.patch"))
(sha256
(base32
"1dsgazia9hmab8cw3iis7s69dvqyfj5wga7ds7w2q5mms1xqbqwm"))))

63
gnu/packages/gl.scm
View file

@ -20,29 +20,29 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages gl)
#:use-module (ice-9 match)
#:use-module (guix build utils)
#:use-module ((guix licenses) #:prefix l:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (gnu packages autotools)
#:use-module (gnu packages bison)
#:use-module (gnu packages flex)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages gettext)
#:use-module (gnu packages linux)
#:use-module (gnu packages python)
#:use-module (gnu packages xorg)
#:use-module (gnu packages xml)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages gettext)
#:use-module (gnu packages guile)
#:use-module (gnu packages linux)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages video)
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages zip))
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages zip)
#:use-module (guix download)
#:use-module (guix build utils)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (ice-9 match))
(define-public glu
(package
@ -71,7 +71,7 @@ (define-public glu
positioning a camera, and selection/picking, Rendering of disk,
cylinder, and sphere primitives, Interpreting OpenGL error values
as ASCII text.")
(license (l:x11-style "http://directory.fsf.org/wiki/License:SGIFreeBv2"))))
(license (license:x11-style "http://directory.fsf.org/wiki/License:SGIFreeBv2"))))
(define-public freeglut
(package
@ -112,7 +112,7 @@ (define-public freeglut
containing OpenGL contexts on a wide range of platforms and also read
the mouse, keyboard and joystick functions. Freeglut is released under
the X-Consortium license.")
(license l:x11)))
(license license:x11)))
(define-public ftgl
(package
@ -138,7 +138,7 @@ (define-public ftgl
"FTGL is a font rendering library for OpenGL applications. Supported
rendering modes are: Bitmaps, Anti-aliased pixmaps, Texture maps, Outlines,
Polygon meshes, and Extruded polygon meshes.")
(license l:x11)))
(license license:x11)))
(define-public s2tc
(package
@ -170,7 +170,7 @@ (define-public s2tc
(description
"S2TC is a patent-free implementation of S3 Texture Compression (S3TC,
also known as DXTn or DXTC) for Mesa.")
(license l:expat)))
(license license:expat)))
;;; Mesa needs LibVA headers to build its Gallium-based VA API implementation;
;;; LibVA itself depends on Mesa. We use the following to solve the circular
@ -287,7 +287,7 @@ (define-public mesa
a system for rendering interactive 3D graphics. A variety of device drivers
allows Mesa to be used in many different environments ranging from software
emulation to complete hardware acceleration for modern GPUs.")
(license l:x11)))
(license license:x11)))
(define-public mesa-headers
(package
@ -317,12 +317,12 @@ (define (mesa-demos-source version)
(method url-fetch)
(uri (string-append "ftp://ftp.freedesktop.org/pub/mesa/demos/" version
"/mesa-demos-" version ".tar.bz2"))
(sha256 (base32 "14msj0prbl3ljwd24yaqv9pz1xzicdmqgg616xxlppbdh6syrgz4"))))
(sha256 (base32 "1vqb7s5m3fcg2csbiz45mha1pys2xx6rhw94fcyvapqdpm5iawy1"))))
(define-public mesa-utils
(package
(name "mesa-utils")
(version "8.2.0")
(version "8.3.0")
(source (mesa-demos-source version))
(build-system gnu-build-system)
(inputs
@ -332,12 +332,7 @@ (define-public mesa-utils
(native-inputs
`(("pkg-config" ,pkg-config)))
(arguments
'(;; XXX: fails to build against latest mesa:
;; eglut.c: error: 'EGL_SCREEN_BIT_MESA' undeclared
;;
;; <https://bugs.freedesktop.org/show_bug.cgi?id=91643>
#:configure-flags '("--disable-egl")
#:phases
'(#:phases
(modify-phases %standard-phases
(replace
'install
@ -355,7 +350,7 @@ (define-public mesa-utils
"The mesa-utils package contains several utility tools for Mesa: glxdemo,
glxgears, glxheads, and glxinfo.")
;; glxdemo is public domain; others expat.
(license (list l:expat l:public-domain))))
(license (list license:expat license:public-domain))))
(define-public glew
(package
@ -399,7 +394,7 @@ (define-public glew
loading library. GLEW provides efficient run-time mechanisms for determining
which OpenGL extensions are supported on the target platform. OpenGL core and
extension functionality is exposed in a single header file.")
(license l:bsd-3)))
(license license:bsd-3)))
(define-public guile-opengl
(package
@ -445,7 +440,7 @@ (define (dynamic-link-substitute file lib input)
(description
"Guile-OpenGL is a library for Guile that provides bindings to the
OpenGL graphics API.")
(license l:lgpl3+)))
(license license:lgpl3+)))
(define-public libepoxy
(package
@ -502,7 +497,7 @@ (define-public libepoxy
(synopsis "A library for handling OpenGL function pointer management")
(description
"A library for handling OpenGL function pointer management.")
(license l:x11)))
(license license:x11)))
(define-public soil
(package
@ -544,4 +539,4 @@ (define-public soil
(description
"SOIL is a tiny C library used primarily for uploading textures into
OpenGL.")
(license l:public-domain)))
(license license:public-domain)))

12
gnu/packages/gnunet.scm
View file

@ -3,7 +3,6 @@
;;; Copyright © 2014 Sree Harsha Totakura <sreeharsha@totakura.in>
;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Ni* Gillmann <ng@niasterisk.space>
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
@ -154,13 +153,16 @@ (define-public libmicrohttpd
(define-public gnurl
(package
(name "gnurl")
(version "7.45.0")
(version "7.48.0")
(source (origin
(method url-fetch)
(uri (string-append "https://gnunet.org/sites/default/files/gnurl-"
version ".tar.bz2"))
(uri (let ((version-with-underscores
(string-join (string-split version #\.) "_")))
(string-append "https://gnunet.org/sites/default/files/"
name "-" version-with-underscores ".tar.bz2")))
(sha256
(base32 "0hd8w4wyjwagd4k6vm6srphqbmysz08rcwf8z7f4b2d6d2yrn3mm"))))
(base32
"14gch4rdibrc8qs4mijsczxvl45dsclf234g17dk6c8nc2s4bm0a"))))
(build-system gnu-build-system)
(inputs `(("gnutls" ,gnutls)
("libidn" ,libidn)

24
gnu/packages/gnupg.scm
View file

@ -60,7 +60,7 @@ (define-public libgpg-error
(base32
"0ywxwswizmkyciy480kzczxn6nhbgzf3z8my4nk43nvv67k4x87j"))))
(build-system gnu-build-system)
(home-page "http://gnupg.org")
(home-page "https://gnupg.org")
(synopsis "Library of error values for GnuPG components")
(description
"Libgpg-error is a small library that defines common error values
@ -96,7 +96,7 @@ (define-public libgcrypt
(list (string-append "--with-gpg-error-prefix="
(assoc-ref %build-inputs "libgpg-error-host")))))
(outputs '("out" "debug"))
(home-page "http://gnupg.org/")
(home-page "https://gnupg.org/")
(synopsis "Cryptographic function library")
(description
"Libgcrypt is a general-purpose cryptographic library. It provides the
@ -122,7 +122,7 @@ (define-public libgcrypt-1.5
(define-public libassuan
(package
(name "libassuan")
(version "2.4.2")
(version "2.4.3")
(source
(origin
(method url-fetch)
@ -130,11 +130,11 @@ (define-public libassuan
version ".tar.bz2"))
(sha256
(base32
"086bbcdnvs48qq5g4iac7dpk76j0q3jrp16mchdvyx0b720xq1mv"))))
"0w9bmasln4z8mn16s1is55a06w3nv8jbyal496z5jvr5vcxkm112"))))
(build-system gnu-build-system)
(propagated-inputs
`(("libgpg-error" ,libgpg-error) ("pth" ,pth)))
(home-page "http://gnupg.org")
(home-page "https://gnupg.org")
(synopsis
"IPC library used by GnuPG and related software")
(description
@ -171,7 +171,7 @@ (define-public libksba
'())
(string-append "--with-gpg-error-prefix="
(assoc-ref %build-inputs "libgpg-error")))))
(home-page "http://www.gnupg.org")
(home-page "https://www.gnupg.org")
(synopsis "CMS and X.509 access library")
(description
"KSBA (pronounced Kasbah) is a library to make X.509 certificates
@ -195,7 +195,7 @@ (define-public npth
(base32
"12n0nvhw4fzwp0k7gjv3rc6pdml0qiinbbfiz4ilg6pl5kdxvnvd"))))
(build-system gnu-build-system)
(home-page "http://www.gnupg.org")
(home-page "https://www.gnupg.org")
(synopsis "Non-preemptive thread library")
(description
"Npth is a library to provide the GNU Pth API and thus a non-preemptive
@ -242,7 +242,7 @@ (define-public gnupg
(substitute* "tests/openpgp/defs.inc"
(("/bin/pwd") (which "pwd"))))
%standard-phases)))
(home-page "http://gnupg.org/")
(home-page "https://gnupg.org/")
(synopsis "GNU Privacy Guard")
(description
"The GNU Privacy Guard is a complete implementation of the OpenPGP
@ -332,7 +332,7 @@ (define-public gpgme
`(("gnupg" ,gnupg-2.0)
("libassuan" ,libassuan)))
(arguments '(#:make-flags '("GPG=gpg2")))
(home-page "http://www.gnupg.org/related_software/gpgme/")
(home-page "https://www.gnupg.org/related_software/gpgme/")
(synopsis "Library providing simplified access to GnuPG functionality")
(description
"GnuPG Made Easy (GPGME) is a library designed to make access to GnuPG
@ -418,7 +418,7 @@ (define-public python-gnupg
"test_gnupg.py" "--no-doctests")))))))
(native-inputs
`(("gnupg" ,gnupg-1)))
(home-page "http://packages.python.org/python-gnupg/index.html")
(home-page "https://packages.python.org/python-gnupg/index.html")
(synopsis "Wrapper for the GNU Privacy Guard")
(description
"This module allows easy access to GnuPG’s key management, encryption
@ -466,7 +466,7 @@ (define-public pius
pius-keyring-mgr and pius-party-worksheet help organisers of
PGP keysigning parties.")
(license license:gpl2)
(home-page "http://www.phildev.net/pius/index.shtml")))
(home-page "https://www.phildev.net/pius/index.shtml")))
(define-public signing-party
(package
@ -566,7 +566,7 @@ (define-public signing-party
;; and caff and gpgsigs: bsd-3, see
;; http://packages.debian.org/changelogs/pool/main/s/signing-party/current/copyright
(license license:gpl2)
(home-page "http://pgp-tools.alioth.debian.org/")))
(home-page "https://pgp-tools.alioth.debian.org/")))
(define-public pinentry-tty
(package

185
gnu/packages/golang.scm Normal file
View file

@ -0,0 +1,185 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com>
;;; Copyright © 2016 Andy Wingo <wingo@igalia.com>
;;;
;;; This file is an addendum GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages golang)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix packages)
#:use-module (guix build-system gnu)
#:use-module (gnu packages admin)
#:use-module (gnu packages gcc)
#:use-module (gnu packages base)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pcre)
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
;; According to https://golang.org/doc/install/gccgo, gccgo-4.8.2 includes a
;; complete go-1.1.2 implementation, gccgo-4.9 includes a complete go-1.2
;; implementation, and gccgo-5 a complete implementation of go-1.4. Ultimately
;; we hope to build go-1.5+ with a bootstrap process using gccgo-5. As of
;; go-1.5, go cannot be bootstrapped without go-1.4, so we need to use go-1.4 or
;; gccgo-5. Mips is not officially supported, but it should work if it is
;; bootstrapped.
(define-public go-1.4
(package
(name "go")
(version "1.4.3")
(source (origin
(method url-fetch)
(uri (string-append "https://storage.googleapis.com/golang/"
name version ".src.tar.gz"))
(sha256
(base32
"0na9yqilzpvq0bjndbibfp07wr796gf252y471cip10bbdqgqiwr"))))
(build-system gnu-build-system)
(outputs '("out"
"doc"
"tests"))
(arguments
`(#:modules ((ice-9 match)
(guix build gnu-build-system)
(guix build utils))
#:tests? #f ; Tests are run by the all.bash script.
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-after 'patch-generated-file-shebangs 'chdir
(lambda _
(chdir "src")))
(add-before 'build 'prebuild
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((gcclib (string-append (assoc-ref inputs "gcc:lib") "/lib"))
(ld (string-append (assoc-ref inputs "libc") "/lib"))
(loader (car (find-files ld "^ld-linux.+")))
(net-base (assoc-ref inputs "net-base"))
(tzdata-path
(string-append (assoc-ref inputs "tzdata") "/share/zoneinfo"))
(output (assoc-ref outputs "out")))
;; Removing net/ tests, which fail when attempting to access
;; network resources not present in the build container.
(for-each delete-file
'("net/multicast_test.go" "net/parse_test.go"
"net/port_test.go"))
;; Add libgcc to the RUNPATH.
(substitute* "cmd/go/build.go"
(("cgoldflags := \\[\\]string\\{\\}")
(string-append "cgoldflags := []string{"
"\"-rpath=" gcclib "\"}"))
(("ldflags := buildLdflags")
(string-append
"ldflags := buildLdflags\n"
"ldflags = append(ldflags, \"-r\")\n"
"ldflags = append(ldflags, \"" gcclib "\")\n")))
(substitute* "os/os_test.go"
(("/usr/bin") (getcwd))
(("/bin/pwd") (which "pwd")))
;; Disable failing tests: these tests attempt to access
;; commands or network resources which are neither available or
;; necessary for the build to succeed.
(for-each
(match-lambda
((file regex)
(substitute* file
((regex all before test_name)
(string-append before "Disabled" test_name)))))
'(("net/net_test.go" "(.+)(TestShutdownUnix.+)")
("net/dial_test.go" "(.+)(TestDialTimeout.+)")
("os/os_test.go" "(.+)(TestHostname.+)")
("time/format_test.go" "(.+)(TestParseInSydney.+)")
("os/exec/exec_test.go" "(.+)(TestEcho.+)")
("os/exec/exec_test.go" "(.+)(TestCommandRelativeName.+)")
("os/exec/exec_test.go" "(.+)(TestCatStdin.+)")
("os/exec/exec_test.go" "(.+)(TestCatGoodAndBadFile.+)")
("os/exec/exec_test.go" "(.+)(TestExitStatus.+)")
("os/exec/exec_test.go" "(.+)(TestPipes.+)")
("os/exec/exec_test.go" "(.+)(TestStdinClose.+)")
("syscall/syscall_unix_test.go" "(.+)(TestPassFD\\(.+)")
("os/exec/exec_test.go" "(.+)(TestExtraFiles.+)")))
(substitute* "net/lookup_unix.go"
(("/etc/protocols") (string-append net-base "/etc/protocols")))
(substitute* "time/zoneinfo_unix.go"
(("/usr/share/zoneinfo/") tzdata-path))
(substitute* (find-files "cmd" "asm.c")
(("/lib/ld-linux.*\\.so\\.[0-9]") loader))
#t)))
(replace 'build
(lambda* (#:key inputs outputs #:allow-other-keys)
;; FIXME: Some of the .a files are not bit-reproducible.
(let* ((output (assoc-ref outputs "out")))
(setenv "CC" (which "gcc"))
(setenv "GOOS" "linux")
(setenv "GOROOT" (dirname (getcwd)))
(setenv "GOROOT_FINAL" output)
(setenv "CGO_ENABLED" "1")
(zero? (system* "sh" "all.bash")))))
(replace 'install
(lambda* (#:key outputs inputs #:allow-other-keys)
(let* ((output (assoc-ref outputs "out"))
(doc_out (assoc-ref outputs "doc"))
(bash (string-append (assoc-ref inputs "bash") "bin/bash"))
(docs (string-append doc_out "/share/doc/" ,name "-" ,version))
(tests (string-append
(assoc-ref outputs "tests") "/share/" ,name "-" ,version)))
(mkdir-p tests)
(copy-recursively "../test" (string-append tests "/test"))
(delete-file-recursively "../test")
(mkdir-p docs)
(copy-recursively "../api" (string-append docs "/api"))
(delete-file-recursively "../api")
(copy-recursively "../doc" (string-append docs "/doc"))
(delete-file-recursively "../doc")
(for-each (lambda (file)
(let ((file (string-append "../" file)))
(install-file file docs)
(delete-file file)))
'("README" "CONTRIBUTORS" "AUTHORS" "PATENTS"
"LICENSE" "VERSION" "robots.txt"))
(copy-recursively "../" output)
#t))))))
(inputs
`(("tzdata" ,tzdata)
("pcre" ,pcre)
("gcc:lib" ,gcc "lib")))
(native-inputs
`(("pkg-config" ,%pkg-config)
("which" ,which)
("net-base" ,net-base)
("perl" ,perl)))
(home-page "https://golang.org/")
(synopsis "Compiler and libraries for Go, a statically-typed language")
(description "Go, also commonly referred to as golang, is an imperative
programming language. Designed primarily for systems programming, it is a
compiled, statically typed language in the tradition of C and C++, with
garbage collection, various safety features and in the style of communicating
sequential processes (CSP) concurrent programming features added.")
(license license:bsd-3)))

28
gnu/packages/graphics.scm
View file

@ -3,6 +3,7 @@
;;; Copyright © 2015 Tomáš Čech <sleep_walker@gnu.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -139,15 +140,15 @@ (define-public blender
(define-public cgal
(package
(name "cgal")
(version "4.6.3")
(version "4.8.1")
(source (origin
(method url-fetch)
(uri (string-append
"http://gforge.inria.fr/frs/download.php/file/"
"35139/CGAL-4.6.3.tar.xz"))
"https://github.com/CGAL/cgal/releases/download/releases/"
"CGAL-" version "/CGAL-" version ".tar.xz"))
(sha256
(base32
"08gwjjh0qz3fakj1y2nsl2qvb0qv5lc7k1pxwjkagh37hxxh4f73"))))
"1c41yzl2jg3d6zx5k0iccwqwibp950q7dr7z7pp4xi9wlph3c87s"))))
(build-system cmake-build-system)
(arguments
'(;; "RelWithDebInfo" is not supported.
@ -211,9 +212,17 @@ (define-public openexr
"0ca2j526n4wlamrxb85y2jrgcv0gf21b3a19rr0gh4rjqkv1581n"))
(modules '((guix build utils)))
(snippet
'(substitute* (find-files "." "tmpDir\\.h")
(("\"/var/tmp/\"")
"\"/tmp/\"")))
'(begin
(substitute* (find-files "." "tmpDir\\.h")
(("\"/var/tmp/\"")
"\"/tmp/\""))
;; Install 'ImfStdIO.h'. Reported at
;; <https://lists.nongnu.org/archive/html/openexr-devel/2016-06/msg00001.html>
;; and <https://github.com/openexr/openexr/pull/184>.
(substitute* "IlmImf/Makefile.in"
(("ImfIO\\.h")
"ImfIO.h ImfStdIO.h"))))
(patches (search-patches "openexr-missing-samples.patch"))))
(build-system gnu-build-system)
(arguments
@ -246,7 +255,7 @@ (define-public openexr
(define-public openimageio
(package
(name "openimageio")
(version "1.5.18")
(version "1.6.15")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/OpenImageIO/oiio/"
@ -254,8 +263,7 @@ (define-public openimageio
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0mn7cz19mn8dcrhkq15h25gl20ammr1wz0j2j3c2vxs6ph7zn8jy"))
(patches (search-patches "openimageio-boost-1.60.patch"))))
"144crq0205d0w5aq4iglh2rhzf54a8rv3pksy6d533b75w5d7rq7"))))
(build-system cmake-build-system)
;; FIXME: To run all tests successfully, test image sets from multiple
;; third party sources have to be present. For details see

25
gnu/packages/grub.scm
View file

@ -2,6 +2,7 @@
;;; Copyright © 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -76,20 +77,21 @@ (define unifont
(define-public grub
(package
(name "grub")
(version "2.00")
(version "2.02beta3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/grub/grub-"
version ".tar.xz"))
(uri (string-append
"ftp://alpha.gnu.org/gnu/grub/grub-"
"2.02~beta3"
".tar.xz"))
(file-name (string-append name "-" version ".tar.xz"))
(sha256
(base32
"0n64hpmsccvicagvr0c6v0kgp2yw0kgnd3jvsyd26cnwgs7c6kkq"))
(patches (search-patches "grub-gets-undeclared.patch"
"grub-freetype.patch"
"grub-CVE-2015-8370.patch"))))
"18ddwnw0vxs7zigvah0g6a5z5vvlz0p8fjglxv1h59sjbrakvv1h"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--disable-werror")
'(;; Two warnings: suggest braces, signed/unsigned comparison.
#:configure-flags '("--disable-werror")
#:phases (modify-phases %standard-phases
(add-after
'unpack 'patch-stuff
@ -100,6 +102,13 @@ (define-public grub
;; Make the font visible.
(copy-file (assoc-ref inputs "unifont") "unifont.bdf.gz")
(system* "gunzip" "unifont.bdf.gz")
;; We hit an assertion failure in
;; grub-core/tests/video_checksum.c, as reported at
;; <https://lists.gnu.org/archive/html/grub-devel/2016-07/msg00026.html>.
;; Disable this test for now.
(substitute* "tests/grub_func_test.in"
(("set -e") "exit 77\nset -e"))
#t)))))
(inputs
`(;; ("lvm2" ,lvm2)

24
gnu/packages/gstreamer.scm
View file

@ -97,7 +97,7 @@ (define-public orc
(define-public gstreamer
(package
(name "gstreamer")
(version "1.8.0")
(version "1.8.2")
(source
(origin
(method url-fetch)
@ -106,7 +106,7 @@ (define-public gstreamer
version ".tar.xz"))
(sha256
(base32
"1p5y9bbrhywng0prmpxv29p6jsz6vd039d49bnc98p9b45532yll"))))
"0hc3j684nx209p10ampvnkza3gna2yiryr7jyx701ciakh3vxglx"))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
(arguments
@ -145,7 +145,7 @@ (define-public gstreamer
(define-public gst-plugins-base
(package
(name "gst-plugins-base")
(version "1.8.0")
(version "1.8.2")
(source
(origin
(method url-fetch)
@ -153,7 +153,7 @@ (define-public gst-plugins-base
name "-" version ".tar.xz"))
(sha256
(base32
"08hmg7fp519wim1fm04r7f2q2020ssdninawqsbrqjsvs70srh5b"))))
"13fk751vvfrfhbm4ip28vxyvlsm4b4y0bc0pvf7fqp8azg40jwcx"))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
(propagated-inputs
@ -198,7 +198,7 @@ (define-public gst-plugins-base
(define-public gst-plugins-good
(package
(name "gst-plugins-good")
(version "1.8.0")
(version "1.8.2")
(source
(origin
(method url-fetch)
@ -207,7 +207,7 @@ (define-public gst-plugins-good
name "-" version ".tar.xz"))
(sha256
(base32
"0kczdvqxvl8kxiy2d7czv16jp73hv9k3nykh47ckihnv8x6i6362"))))
"0i1rlbbx3m6ykvcdyaidsd8wa2b7nq2qmcvbrsg00yivi88ljxcd"))))
(build-system gnu-build-system)
(inputs
`(("aalib" ,aalib)
@ -336,7 +336,7 @@ (define-public gst-plugins-bad
(define-public gst-plugins-ugly
(package
(name "gst-plugins-ugly")
(version "1.8.0")
(version "1.8.2")
(source
(origin
(method url-fetch)
@ -344,7 +344,7 @@ (define-public gst-plugins-ugly
name "/" name "-" version ".tar.xz"))
(sha256
(base32
"137b6kqykh5nwbmiv28nn1pc1d2x2rb2xxg382pc9pa9gpxpyrak"))))
"1b58s7z430cbbaw8mgy87kslbpmj3xmm66wsr7bddhcgm6i36nww"))))
(build-system gnu-build-system)
(inputs
`(("gst-plugins-base" ,gst-plugins-base)
@ -374,7 +374,7 @@ (define-public gst-plugins-ugly
(define-public gst-libav
(package
(name "gst-libav")
(version "1.8.0")
(version "1.8.2")
(source (origin
(method url-fetch)
(uri (string-append
@ -382,7 +382,7 @@ (define-public gst-libav
name "-" version ".tar.xz"))
(sha256
(base32
"0719njp8aarhvn038pijq6dmsnli0zlg146hyfs3rsdffs4f472s"))))
"0yk8pxg3xi26ndj7pliqdfphy0jmqsq4dmdzy31gbd9rgficgwxm"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--with-system-libav")
@ -411,7 +411,7 @@ (define-public gst-libav
(define-public python-gst
(package
(name "python-gst")
(version "1.8.0")
(version "1.8.2")
(source (origin
(method url-fetch)
(uri (string-append
@ -419,7 +419,7 @@ (define-public python-gst
"gst-python-" version ".tar.xz"))
(sha256
(base32
"1spn49x7yaj69df6mxh9wwcs0y3abswkfpk84njs71lzqlbzyiff"))))
"15sdfa6lq5pswvi09vk51cs30yf8wr2rlm9myhb4q0c2jhiial2g"))))
(build-system gnu-build-system)
(arguments
;; XXX: Factorize python-sitedir with python-build-system.

4
gnu/packages/imagemagick.scm
View file

@ -41,14 +41,14 @@ (define-module (gnu packages imagemagick)
(define-public imagemagick
(package
(name "imagemagick")
(version "6.9.4-10")
(version "6.9.5-0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://imagemagick/ImageMagick-"
version ".tar.xz"))
(sha256
(base32
"0bbac9zdjl2g8x127jx5jisih9r49980w7ar6m8xj3nyh3m83jd2"))))
"1d1hmmnks071zfkpv971b3q56qlml0wv1xlw8yvq6cnybc2cwc3q"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--with-frozenpaths")

6
gnu/packages/irc.scm
View file

@ -72,14 +72,16 @@ (define-public quassel
"-DUSE_QT5=ON" ; default is qt4
"-DWITH_KDE=OFF" ; no to integration
"-DWITH_OXYGEN=ON" ; on=embed icons
"-DWITH_WEBKIT=ON") ; wants qtwebkit, in qt5
"-DWITH_WEBKIT=OFF") ; qtwebkit isn't packaged
#:tests? #f)) ; no test target
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
("oxygen-icons" ,oxygen-icons)
("qca" ,qca)
("qt", qt)
("qtbase", qtbase)
("qttools" ,qttools)
("qtscript" ,qtscript)
("snorenotify" ,snorenotify)
("zlib" ,zlib)))
(home-page "http://quassel-irc.org/")

3
gnu/packages/julia.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -26,6 +27,7 @@ (define-module (gnu packages julia)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages base)
#:use-module (gnu packages compression)
#:use-module (gnu packages elf)
#:use-module (gnu packages gcc)
#:use-module (gnu packages llvm)
@ -262,6 +264,7 @@ (define-public julia
("mpfr" ,mpfr)
("wget" ,wget)
("which" ,which)
("zlib" ,zlib)
("gmp" ,gmp)
;; FIXME: The following inputs are downloaded from upstream to allow us
;; to use the lightweight Julia release tarball. Ideally, these inputs

5
gnu/packages/kde.scm
View file

@ -44,7 +44,7 @@ (define-public qca
`(("pkg-config" ,pkg-config)))
(inputs
`(("openssl" ,openssl)
("qt" ,qt)))
("qtbase" ,qtbase)))
(home-page "http://delta.affinix.com/qca/")
(synopsis "Libraries for the Qt Cryptographic Architecture")
(description "The Qt Cryptographic Architecture (QCA) provides a
@ -70,7 +70,8 @@ (define-public snorenotify
`(#:tests? #f)) ; both tests fail, require display
(inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
("qt" ,qt)))
("qtbase" ,qtbase)
("qttools" ,qttools)))
(home-page "https://techbase.kde.org/Projects/Snorenotify")
(synopsis "Qt notification framework")
(description "Snorenotify is a multi platform Qt notification framework.

12
gnu/packages/libreoffice.scm
View file

@ -94,14 +94,14 @@ (define-public ixion
(define-public orcus
(package
(name "orcus")
(version "0.7.1")
(version "0.9.2")
(source
(origin
(method url-fetch)
(uri (string-append "http://kohei.us/files/" name "/src/lib"
name "-" version ".tar.xz"))
(sha256 (base32
"0hva4qalg3dk6n1118ncr5fy8cqnj2f7fwldw7aa04124rj6p104"))))
"170racjz7s7yxza722hxsqc12788w57qnp6x6j2692pzp3qzjjfx"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@ -709,7 +709,7 @@ (define xmlsec-src-libreoffice
(define-public libreoffice
(package
(name "libreoffice")
(version "5.0.5.2")
(version "5.1.4.2")
(source
(origin
(method url-fetch)
@ -718,7 +718,7 @@ (define-public libreoffice
"http://download.documentfoundation.org/libreoffice/src/"
(version-prefix version 3) "/libreoffice-" version ".tar.xz"))
(sha256 (base32
"120vcxpxzs0za76fyfry281ysv6d1ianb37d1yq8py8chkdjkrqy"))))
"11c30y9gvsy5h3nh9pnciq57gi99plrmr6qp8hhdk2l5xmwlmrfa"))))
(build-system gnu-build-system)
(native-inputs
`(;; autoreconf is run by the LibreOffice build system, since after
@ -730,7 +730,7 @@ (define-public libreoffice
("cppunit" ,cppunit)
("flex" ,flex)
("pkg-config" ,pkg-config)
("python" ,python)
("python" ,python-wrapper)
("which" ,which)))
(inputs
`(("bluez" ,bluez)
@ -851,6 +851,8 @@ (define-public libreoffice
"--disable-coinmp"
"--disable-firebird-sdbc" ; embedded firebird
"--disable-gltf"
"--without-doxygen"
"--disable-gtk3"
"--disable-liblangtag")))
(home-page "https://www.libreoffice.org/")
(synopsis "Office suite")

13
gnu/packages/libusb.scm
View file

@ -92,14 +92,14 @@ (define-public libusb-compat
(define-public python-pyusb
(package
(name "python-pyusb")
(version "1.0.0rc1")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyusb" version))
(uri (pypi-uri "PyUSB" version))
(sha256
(base32
"07cjq11qhngzjd746k7688s6y2x7lpj669fxqfsiy985rg0jsn7j"))))
"0s2k4z06fapd5vp1gnrlf8a9sjpc03p9974lzw5k6ky39akzyd2v"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ;no tests
@ -135,15 +135,14 @@ (define-public python2-pyusb
(define-public libmtp
(package
(name "libmtp")
(version "1.1.9")
(version "1.1.11")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/libmtp/" version
"/libmtp-" version ".tar.gz"))
(sha256
(base32
"12dinqic0ljnhrwx3rc61jc7q24ybr0mckc2ya5kh1s1np0d7w93"))
(patches (search-patches "libmtp-devices.patch"))))
(base32
"1sc768q2cixwanlwrz95mp389iaadl4s95486caavxx4g7znvn8m"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))

156
gnu/packages/linux.scm
View file

@ -7,12 +7,13 @@
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
;;; Copyright © 2016 Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016 Alex Kost <alezost@gmail.com>
;;; Copyright © 2016 Raymond Nicholson <rain1@openmailbox.org>
;;; Copyright © 2016 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2016 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;;
;;; This file is part of GNU Guix.
;;;
@ -30,49 +31,49 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages linux)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages flex)
#:use-module (gnu packages bison)
#:use-module (gnu packages admin)
#:use-module (gnu packages gperf)
#:use-module (gnu packages libusb)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages pciutils)
#:use-module (gnu packages databases)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages slang)
#:use-module (gnu packages algebra)
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages attr)
#:use-module (gnu packages xml)
#:use-module (gnu packages autotools)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages check)
#:use-module (gnu packages maths)
#:use-module (gnu packages base)
#:use-module (gnu packages rrdtool)
#:use-module (gnu packages elf)
#:use-module (gnu packages gtk)
#:use-module (gnu packages bison)
#:use-module (gnu packages calendar)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages databases)
#:use-module (gnu packages docbook)
#:use-module (gnu packages documentation)
#:use-module (gnu packages readline)
#:use-module (gnu packages calendar)
#:use-module (gnu packages tls)
#:use-module (gnu packages elf)
#:use-module (gnu packages flex)
#:use-module (gnu packages freedesktop)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
#:use-module (gnu packages gperf)
#:use-module (gnu packages gtk)
#:use-module (gnu packages libusb)
#:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages pciutils)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
#:use-module (gnu packages readline)
#:use-module (gnu packages rrdtool)
#:use-module (gnu packages slang)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tls)
#:use-module (gnu packages xml)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module (guix build-system trivial)
#:use-module (guix download)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-2)
#:use-module (srfi srfi-26)
@ -225,7 +226,7 @@ (define* (kernel-config system #:key variant)
(search-path %load-path file)))
(define-public linux-libre
(let* ((version "4.6.3")
(let* ((version "4.6.4")
(build-phase
'(lambda* (#:key system inputs #:allow-other-keys #:rest args)
;; Avoid introducing timestamps
@ -303,7 +304,7 @@ (define-public linux-libre
(uri (linux-libre-urls version))
(sha256
(base32
"1ajhdk9jq0pfxlhvzwarbxc23418yqav1v0z0mnfs575y5lq2gmp"))))
"1294qw4agax0cnbhh0dk33jz358smhflllg77zv0rd8w9g433xiz"))))
(build-system gnu-build-system)
(supported-systems '("x86_64-linux" "i686-linux"))
(native-inputs `(("perl" ,perl)
@ -340,13 +341,13 @@ (define-public linux-libre
(define-public linux-libre-4.4
(package
(inherit linux-libre)
(version "4.4.14")
(version "4.4.15")
(source (origin
(method url-fetch)
(uri (linux-libre-urls version))
(sha256
(base32
"1yfmzrjrkj8mn2dfd7p98w13afchrkpz26gwfcm2fhsmla16n1my"))))
"0n3lz4xnciif9v3y769q1pjs9321gvl6a2wr10r40sl1ixlk3ipz"))))
(native-inputs
(let ((conf (kernel-config (or (%current-target-system)
(%current-system))
@ -1433,17 +1434,15 @@ (define-public unionfs-fuse/static
(define-public sshfs-fuse
(package
(name "sshfs-fuse")
(version "2.5")
(version "2.8")
(source (origin
(method url-fetch)
(uri (let ((version-with-underscores
(string-join (string-split version #\.) "_")))
(string-append "https://github.com/libfuse/sshfs/releases/"
"download/sshfs_" version-with-underscores
"/sshfs-fuse-" version ".tar.gz")))
(uri (string-append "https://github.com/libfuse/sshfs/releases/"
"download/sshfs_" version
"/sshfs-" version ".tar.gz"))
(sha256
(base32
"0gp6qr33l2p0964j0kds0dfmvyyf5lpgsn11daf0n5fhwm9185z9"))))
"08mdd4rs7yys7hmyig6i08qlid76p17xlvrh64k7wsrfs1s92s3z"))))
(build-system gnu-build-system)
(inputs
`(("fuse" ,fuse)
@ -1876,9 +1875,14 @@ (define-public lm-sensors
(version "3.3.5")
(source (origin
(method url-fetch)
(uri (string-append
"ftp://ftp.netroedge.com/pub/lm-sensors/lm_sensors-"
version ".tar.bz2"))
(uri (list (string-append
"ftp://ftp.netroedge.com/pub/lm-sensors/"
"lm_sensors-" version ".tar.bz2")
(string-append
"http://pkgs.fedoraproject.org/repo/pkgs/"
"lm_sensors/lm_sensors-3.3.5.tar.bz2/"
"da506dedceb41822e64865f6ba34828a/"
"lm_sensors-3.3.5.tar.bz2")))
(sha256
(base32
"1ksgrynxgrq590nb2fwxrl1gwzisjkqlyg3ljfd1al0ibrk6mbjx"))
@ -2754,3 +2758,63 @@ (define-public ntfs-3g
commonly found on Microsoft Windows. It is implemented as a FUSE file system.
The package provides additional NTFS tools.")
(license license:gpl2+)))
(define-public rng-tools
(package
(name "rng-tools")
(version "5")
(source (origin
(method url-fetch)
(uri (string-append
"http://downloads.sourceforge.net/sourceforge/gkernel/"
"rng-tools-" version ".tar.gz"))
(sha256
(base32
"13h7lc8wl9khhvkr0i3bl5j9bapf8anhqis1lcnwxg1vc2v058b0"))))
(build-system gnu-build-system)
(synopsis "Random number generator daemon")
(description
"Monitor a hardware random number generator, and supply entropy
from that to the system kernel's @file{/dev/random} machinery.")
(home-page "http://sourceforge.net/projects/gkernel")
;; The source package is offered under the GPL2+, but the files
;; 'rngd_rdrand.c' and 'rdrand_asm.S' are only available under the GPL2.
(license (list license:gpl2 license:gpl2+))))
(define-public cpupower
(package
(name "cpupower")
(version (package-version linux-libre))
(source (package-source linux-libre))
(build-system gnu-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
(add-after 'unpack 'enter-subdirectory
(lambda _
(chdir "tools/power/cpupower")))
(delete 'configure)
(add-before 'build 'fix-makefiles
(lambda _
(substitute* "Makefile"
(("/usr/") "/")
(("/bin/(install|pwd)" _ command) command))
(substitute* "bench/Makefile"
(("\\$\\(CC\\) -o") "$(CC) $(LDFLAGS) -o")))))
#:make-flags (let ((out (assoc-ref %outputs "out")))
(list (string-append "DESTDIR=" out)
(string-append "LDFLAGS=-Wl,-rpath=" out "/lib")
"docdir=/share/doc/cpupower"
"confdir=$(docdir)/examples"
;; The Makefile recommends the following changes
"DEBUG=false"
"PACKAGE_BUGREPORT=bug-guix@gnu.org"))
#:tests? #f)) ;no tests
(native-inputs `(("gettext" ,gnu-gettext)))
(inputs `(("pciutils" ,pciutils)))
(home-page (package-home-page linux-libre))
(synopsis "CPU frequency and voltage scaling tools for Linux")
(description
"cpupower is a set of user-space tools that use the cpufreq feature of the
Linux kernel to retrieve and control processor features related to power saving,
such as frequency and voltage scaling.")
(license license:gpl2)))

2
gnu/packages/lisp.scm
View file

@ -3,7 +3,7 @@
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;;
;;; This file is part of GNU Guix.
;;;

94
gnu/packages/llvm.scm
View file

@ -1,7 +1,8 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014, 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -20,7 +21,7 @@
(define-module (gnu packages llvm)
#:use-module (guix packages)
#:use-module (guix licenses)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
@ -28,6 +29,8 @@ (define-module (gnu packages llvm)
#:use-module (gnu packages)
#:use-module (gnu packages gcc)
#:use-module (gnu packages bootstrap) ;glibc-dynamic-linker
#:use-module (gnu packages compression)
#:use-module (gnu packages libffi)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
#:use-module (gnu packages xml))
@ -35,7 +38,7 @@ (define-module (gnu packages llvm)
(define-public llvm
(package
(name "llvm")
(version "3.6.2")
(version "3.8.1")
(source
(origin
(method url-fetch)
@ -43,14 +46,21 @@ (define-public llvm
version "/llvm-" version ".src.tar.xz"))
(sha256
(base32
"153vcvj8gvgwakzr4j0kndc0b7wn91c2g1vy2vg24s6spxcc23gn"))))
"1ybmnid4pw2hxn12ax5qa5kl1ldfns0njg8533y3mzslvd5cx0kf"))))
(build-system cmake-build-system)
(native-inputs
`(("python" ,python-wrapper)
`(("python" ,python-2) ;bytes->str conversion in clang>=3.7 needs python-2
("perl" ,perl)))
(inputs
`(("libffi" ,libffi)
("zlib" ,zlib)))
(arguments
`(#:configure-flags '("-DCMAKE_SKIP_BUILD_RPATH=FALSE"
"-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE")))
"-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"
"-DLLVM_ENABLE_FFI:BOOL=TRUE")
;; Don't use '-g' during the build, to save space.
#:build-type "Release"))
(home-page "http://www.llvm.org")
(synopsis "Optimizing compiler infrastructure")
(description
@ -60,7 +70,7 @@ (define-public llvm
front-ends derived from GCC 4.0.1. A new front-end for the C family of
languages is in development. The compiler infrastructure includes mirror sets
of programming tools as well as libraries with equivalent functionality.")
(license ncsa)))
(license license:ncsa)))
(define (clang-runtime-from-llvm llvm hash)
(package
@ -78,8 +88,8 @@ (define (clang-runtime-from-llvm llvm hash)
`(("llvm" ,llvm)))
(arguments
`(;; Don't use '-g' during the build to save space.
#:build-type "Release"))
#:build-type "Release"
#:tests? #f)) ; Tests require gtest
(home-page "http://compiler-rt.llvm.org")
(synopsis "Runtime library for Clang/LLVM")
(description
@ -87,12 +97,13 @@ (define (clang-runtime-from-llvm llvm hash)
functions for C and C++ programs. It also provides header files that allow C
and C++ source code to interface with the \"sanitization\" passes of the clang
compiler. In LLVM this library is called \"compiler-rt\".")
(license ncsa)
(license license:ncsa)
;; <http://compiler-rt.llvm.org/> doesn't list MIPS as supported.
(supported-systems (delete "mips64el-linux" %supported-systems))))
(define (clang-from-llvm llvm clang-runtime hash)
(define* (clang-from-llvm llvm clang-runtime hash
#:key (patches '("clang-libc-search-path.patch")))
(package
(name "clang")
(version (package-version llvm))
@ -102,7 +113,7 @@ (define (clang-from-llvm llvm clang-runtime hash)
(uri (string-append "http://llvm.org/releases/"
version "/cfe-" version ".src.tar.xz"))
(sha256 (base32 hash))
(patches (search-patches "clang-libc-search-path.patch"))))
(patches (map search-patch patches))))
;; Using cmake allows us to treat llvm as an external library. There
;; doesn't seem to be any way to do this with clang's autotools-based
;; build system.
@ -170,20 +181,21 @@ (define (clang-from-llvm llvm clang-runtime hash)
Objective-C++ programming languages. It uses LLVM as its back end. The Clang
project includes the Clang front end, the Clang static analyzer, and several
code analysis tools.")
(license ncsa)))
(license license:ncsa)))
(define-public clang-runtime
(clang-runtime-from-llvm
llvm
"11qx8d3pbfqjaj2x207pvlvzihbs1z2xbw4crpz7aid6h1yz6bqg"))
"0p0y85c7izndbpg2l816z7z7558axq11d5pwkm4h11sdw7d13w0d"))
(define-public clang
(clang-from-llvm llvm clang-runtime
"1wwr8s6lzr324hv4s1k6na4j5zv6n9kdhi14s4kb9b13d93814df"))
"1prc72xmkgx8wrzmrr337776676nhsp1qd3mw2bvb22bzdnq7lsc"
#:patches '("clang-3.8-libc-search-path.patch")))
(define-public llvm-3.5
(define-public llvm-3.7
(package (inherit llvm)
(version "3.5.0")
(version "3.7.1")
(source
(origin
(method url-fetch)
@ -191,13 +203,55 @@ (define-public llvm-3.5
version "/llvm-" version ".src.tar.xz"))
(sha256
(base32
"00swb43mzlvda8306arlg2jw7g6k3acwfccgf1k4c2pgd3rrkq98"))))))
"1masakdp9g2dan1yrazg7md5am2vacbkb3nahb3dchpc1knr8xxy"))))))
(define-public clang-runtime-3.7
(clang-runtime-from-llvm
llvm-3.7
"10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx"))
(define-public clang-3.7
(clang-from-llvm llvm-3.7 clang-runtime-3.7
"0x065d0w9b51xvdjxwfzjxng0gzpbx45fgiaxpap45ragi61dqjn"))
(define-public llvm-3.6
(package (inherit llvm)
(version "3.6.2")
(source
(origin
(method url-fetch)
(uri (string-append "http://llvm.org/releases/"
version "/llvm-" version ".src.tar.xz"))
(sha256
(base32
"153vcvj8gvgwakzr4j0kndc0b7wn91c2g1vy2vg24s6spxcc23gn"))))))
(define-public clang-runtime-3.6
(clang-runtime-from-llvm
llvm-3.6
"11qx8d3pbfqjaj2x207pvlvzihbs1z2xbw4crpz7aid6h1yz6bqg"))
(define-public clang-3.6
(clang-from-llvm llvm-3.6 clang-runtime-3.6
"1wwr8s6lzr324hv4s1k6na4j5zv6n9kdhi14s4kb9b13d93814df"))
(define-public llvm-3.5
(package (inherit llvm)
(version "3.5.2")
(source
(origin
(method url-fetch)
(uri (string-append "http://llvm.org/releases/"
version "/llvm-" version ".src.tar.xz"))
(sha256
(base32
"0xf5q17kkxsrm2gsi93h4pwlv663kji73r2g4asb97klsmb626a4"))))))
(define-public clang-runtime-3.5
(clang-runtime-from-llvm
llvm-3.5
"0dl1kbrhz96djsxqr61iw5h788s7ncfpfb7aayixky1bhdaydcx4"))
"1hsdnzzdr5kglz6fnv3lcsjs222zjsy14y8ax9dy6zqysanplbal"))
(define-public clang-3.5
(clang-from-llvm llvm-3.5 clang-runtime-3.5
"12yv3jwdjcbkrx7zjm8wh4jrvb59v8fdw4mnmz3zc1jb00p9k07w"))
"0846h8vn3zlc00jkmvrmy88gc6ql6014c02l4jv78fpvfigmgssg"))

45
gnu/packages/logging.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -21,8 +22,10 @@ (define-module (gnu packages logging)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages))
#:use-module (gnu packages perl)
#:use-module (gnu packages autotools))
(define-public log4cpp
(package
@ -45,3 +48,43 @@ (define-public log4cpp
staying as close to their API as is reasonable.")
(home-page "http://log4cpp.sourceforge.net/")
(license license:lgpl2.1+)))
(define-public glog
(package
(name "glog")
(version "0.3.4")
(home-page "https://github.com/google/glog")
(source (origin
(method git-fetch)
(uri (git-reference
(url home-page)
(commit (string-append "v" version))))
(sha256
(base32
"0ym5g15m7c8kjfr2c3zq6bz08ghin2d1r1nb6v2vnkfh1vn945x1"))
(file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl) ;for tests
("autoconf" ,(autoconf-wrapper))
("automake" ,automake)
("libtool" ,libtool)))
(arguments
'(#:phases (modify-phases %standard-phases
(add-before 'configure 'add-automake-files
(lambda _
;; The 'test-driver' file is a dangling symlink to
;; /usr/share/automake; replace it. We can't just run
;; 'automake -ac' because it complains about version
;; mismatch, so run the whole thing.
(delete-file "test-driver")
(delete-file "configure") ;it's read-only
(zero? (system* "autoreconf" "-vfi")))))))
(synopsis "C++ logging library")
(description
"Google glog is a library that implements application-level logging.
This library provides logging APIs based on C++-style streams and various
helper macros. You can log a message by simply streaming things to log at a
particular severity level. It allows logging to be controlled from the
command line.")
(license license:bsd-3)))

159
gnu/packages/lsh.scm
View file

@ -1,159 +0,0 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages lsh)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages m4)
#:use-module (gnu packages linux)
#:use-module (gnu packages nettle)
#:use-module (gnu packages compression)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages readline)
#:use-module (gnu packages gperf)
#:use-module (gnu packages guile)
#:use-module (gnu packages xorg))
(define-public liboop
(package
(name "liboop")
(version "1.0")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.ofb.net/liboop/liboop-"
version ".tar.gz"))
(sha256
(base32
"0z6rlalhvfca64jpvksppc9bdhs7jwhiw4y35g5ibvh91xp3rn1l"))
(patches (search-patches "liboop-mips64-deplibs-fix.patch"))))
(build-system gnu-build-system)
(home-page "http://www.lysator.liu.se/liboop/")
(synopsis "Event loop library")
(description "Liboop is a low-level event loop management library for
POSIX-based operating systems. It supports the development of modular,
multiplexed applications which may respond to events from several sources. It
replaces the \"select() loop\" and allows the registration of event handlers
for file and network I/O, timers and signals. Since processes use these
mechanisms for almost all external communication, liboop can be used as the
basis for almost any application.")
(license license:lgpl2.1+)))
(define-public lsh
(package
(name "lsh")
(version "2.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/lsh/lsh-"
version ".tar.gz"))
(sha256
(base32
"1qqjy9zfzgny0rkb27c8c7dfsylvb6n0ld8h3an2r83pmaqr9gwb"))
(modules '((guix build utils)))
(snippet
'(begin
(substitute* "src/testsuite/functions.sh"
(("localhost")
;; Avoid host name lookups since they don't work in
;; chroot builds.
"127.0.0.1")
(("set -e")
;; Make tests more verbose.
"set -e\nset -x"))
(substitute* (find-files "src/testsuite" "-test$")
(("localhost") "127.0.0.1"))
(substitute* "src/testsuite/login-auth-test"
(("/bin/cat") "cat"))))))
(build-system gnu-build-system)
(native-inputs
`(("m4" ,m4)
("guile" ,guile-2.0)
("gperf" ,gperf)
("psmisc" ,psmisc))) ; for `killall'
(inputs
`(("nettle" ,nettle-2)
("linux-pam" ,linux-pam)
;; 'rl.c' uses the 'CPPFunction' type, which is no longer in
;; Readline 6.3.
("readline" ,readline-6.2)
("liboop" ,liboop)
("zlib" ,zlib)
("gmp" ,gmp)
;; The server (lshd) invokes xauth when X11 forwarding is requested.
;; This adds 24 MiB (or 27%) to the closure of lsh.
("xauth" ,xauth)))
(arguments
'(;; Skip the `configure' test that checks whether /dev/ptmx &
;; co. work as expected, because it relies on impurities (for
;; instance, /dev/pts may be unavailable in chroots.)
#:configure-flags '("lsh_cv_sys_unix98_ptys=yes")
;; FIXME: Tests won't run in a chroot, presumably because
;; /etc/profile is missing, and thus clients get an empty $PATH
;; and nothing works.
#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'configure 'pre-configure
(lambda* (#:key inputs #:allow-other-keys)
(let* ((nettle (assoc-ref inputs "nettle"))
(sexp-conv (string-append nettle "/bin/sexp-conv")))
;; Make sure 'lsh' and 'lshd' pick 'sexp-conv' in the right place
;; by default.
(substitute* "src/environ.h.in"
(("^#define PATH_SEXP_CONV.*")
(string-append "#define PATH_SEXP_CONV \""
sexp-conv "\"\n")))
;; Same for the 'lsh-authorize' script.
(substitute* "src/lsh-authorize"
(("=sexp-conv")
(string-append "=" sexp-conv)))
;; Tell lshd where 'xauth' lives. Another option would be to
;; hardcode "/run/current-system/profile/bin/xauth", thereby
;; reducing the closure size, but that wouldn't work on foreign
;; distros.
(with-fluids ((%default-port-encoding "ISO-8859-1"))
(substitute* "src/server_x11.c"
(("define XAUTH_PROGRAM.*")
(string-append "define XAUTH_PROGRAM \""
(assoc-ref inputs "xauth")
"/bin/xauth\"\n")))))
;; Tests rely on $USER being set.
(setenv "USER" "guix"))))))
(home-page "http://www.lysator.liu.se/~nisse/lsh/")
(synopsis "GNU implementation of the Secure Shell (ssh) protocols")
(description
"GNU lsh is a free implementation of the SSH version 2 protocol. It is
used to create a secure line of communication between two computers,
providing shell access to the server system from the client. It provides
both the server daemon and the client application, as well as tools for
manipulating key files.")
(license license:gpl2+)))

17
gnu/packages/lxde.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -71,14 +72,14 @@ (define-public libfm-extra
(define-public lxappearance
(package
(name "lxappearance")
(version "0.6.1")
(version "0.6.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/project/lxde/"
"LXAppearance/" name "-" version ".tar.xz"))
(sha256
(base32
"1phnv1b2jdj2vlibjyc9z01izcf3k5zxj8glsaf0i3vh77zqmqq9"))))
"07r0xbi6504zjnbpan7zrn7gi4j0kbsqqfpj8v2x94gr05p16qj4"))))
(build-system gnu-build-system)
(inputs `(("gtk+" ,gtk+-2)))
(native-inputs `(("intltool" ,intltool)
@ -92,7 +93,7 @@ (define-public lxappearance
(define-public lxrandr
(package
(name "lxrandr")
(version "0.3.0")
(version "0.3.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/project/lxde/LXRandR"
@ -101,7 +102,7 @@ (define-public lxrandr
name "-" version ".tar.xz"))
(sha256
(base32
"0xkbqv66hisbxkvnf7y5kwqbhrq26f49wd7w6ylhnjlccpnylg8q"))))
"0khqi42paqg82jllb2kza4arf3fafzgq90fhyr3rw3d9hn23763d"))))
(build-system gnu-build-system)
(inputs `(("gtk+" ,gtk+-2)))
(native-inputs `(("intltool" ,intltool)
@ -118,7 +119,7 @@ (define-public lxrandr
(define-public lxtask
(package
(name "lxtask")
(version "0.1.6")
(version "0.1.7")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/project/lxde/LXTask"
@ -127,7 +128,7 @@ (define-public lxtask
name "-" version ".tar.xz"))
(sha256
(base32
"0ia3i430lpwgl2kch6sl1za8qf96wc4fkcv91yhdzgnzafcnm3gp"))))
"1zihhvzsg9bl6k0gv7jwx6cgsi3rmcagvnmshc1h0mjq2immmdph"))))
(build-system gnu-build-system)
(inputs `(("gtk+" ,gtk+-2)))
(native-inputs `(("intltool" ,intltool)
@ -167,7 +168,7 @@ (define-public lxterminal
(define-public menu-cache
(package
(name "menu-cache")
(version "1.0.0")
(version "1.0.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/project/lxde/" name "/"
@ -175,7 +176,7 @@ (define-public menu-cache
name "-" version ".tar.xz"))
(sha256
(base32
"1bws84fiwk3anp30hcr0lw1xw5cgp44x5ik2yv2ijcgxpcvz8zgz"))))
"0ngxvwfj9drabqi3lyzgpi0d0za6431sy2ijb010filrj54jdiqa"))))
(build-system gnu-build-system)
(inputs `(("glib" ,glib)
("libfm" ,libfm-extra)))

46
gnu/packages/mail.scm
View file

@ -14,6 +14,7 @@
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org>
;;; Copyright © 2016 Alex Kost <alezost@gmail.com>
;;; Copyright © 2016 Troy Sankey <sankeytms@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -397,6 +398,40 @@ (define-public mu
attachments, create new maildirs, and so on.")
(license gpl3+)))
(define-public alot
(package
(name "alot")
(version "0.3.7")
(source (origin
(method url-fetch)
; v0.3.7 not on PyPi yet, so use github instead
(uri (string-append "https://github.com/pazz/alot/archive/"
version ".tar.gz"))
(file-name (string-append "alot-" version ".tar.gz"))
(sha256
(base32
"09md9llg38r6xby8l0y0zf8nhlh91cr4xs0r15b294hhp8hl2bgx"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; no tests
; python 3 is unsupported, more info:
; https://github.com/pazz/alot/blob/0.3.7/docs/source/faq.rst
#:python ,python-2))
(inputs
`(("python2-magic" ,python2-magic)
("python2-configobj" ,python2-configobj)
("python2-twisted" ,python2-twisted)
("python2-urwid" ,python2-urwid)
("python2-urwidtrees" ,python2-urwidtrees)
("python2-pygpgme" ,python2-pygpgme)
("python2-notmuch" ,python2-notmuch)))
(home-page "https://github.com/pazz/alot")
(synopsis "Commandline MUA using notmuch")
(description
"Alot is an experimental terminal mail user agent (MUA) based on
@code{notmuch} mail. It is written in Python using the @code{urwid} toolkit.")
(license gpl3+)))
(define-public notmuch
(package
(name "notmuch")
@ -519,7 +554,7 @@ (define-public python2-notmuch
(define-public getmail
(package
(name "getmail")
(version "4.48.0")
(version "4.49.0")
(source
(origin
(method url-fetch)
@ -527,7 +562,7 @@ (define-public getmail
name "-" version ".tar.gz"))
(sha256
(base32
"0k5rm5kag14izng2ajcagvli9sns5mzvkyfa65ri4xymxs91wi29"))))
"1m0yzxd05fklwbmjj1n2q4sx397c1j5qi9a0r5fv3h8pplz4lv0w"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; no tests
@ -546,14 +581,14 @@ (define-public getmail
(define-public libetpan
(package
(name "libetpan")
(version "1.6")
(version "1.7.2")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/dinhviethoa/" name
"/archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "05qyqx2c1ppb1jnrs3m52i60f9xlxfxdmb9dnwg4vqjv8kwv2qkr"))))
(base32 "081ixgj3skglq9i7v0jb835lmfx21zi4i5b7997igwr0lj174y9j"))))
(build-system gnu-build-system)
(native-inputs `(("autoconf" ,(autoconf-wrapper))
("automake" ,automake)
@ -566,7 +601,8 @@ (define-public libetpan
("openssl" ,openssl)))
(inputs
`(("curl" ,curl)
("expat" ,expat)))
("expat" ,expat)
("zlib" ,zlib)))
(arguments
'(#:phases (alist-cons-after
'unpack 'autogen

12
gnu/packages/man.scm
View file

@ -58,14 +58,14 @@ (define-public libpipeline
(define-public man-db
(package
(name "man-db")
(version "2.7.1")
(version "2.7.5")
(source (origin
(method url-fetch)
(uri (string-append "mirror://savannah/man-db/man-db-"
version ".tar.xz"))
(sha256
(base32
"03ly0hbpgjnag576rgccanaisn7f6422q5qxrj64vyzslc2651y4"))))
"056a3il7agfazac12yggcg4gf412yq34k065im0cpfxbcw6xskaw"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@ -129,7 +129,7 @@ (define-public man-db
(define-public man-pages
(package
(name "man-pages")
(version "4.04")
(version "4.06")
(source (origin
(method url-fetch)
(uri
@ -142,7 +142,7 @@ (define-public man-pages
"man-pages-" version ".tar.xz")))
(sha256
(base32
"0v8zxq4scfixy3pjpw9ankvv5v8frv62khv4xm1jpkswyq6rbqcg"))))
"0vv056k9yyf05dqal9m2pq3pv9c8lnp7i5rjxvcnic6aq7vyrafb"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-delete 'configure %standard-phases)
@ -168,7 +168,7 @@ (define-public man-pages
(define-public help2man
(package
(name "help2man")
(version "1.47.3")
(version "1.47.4")
(source
(origin
(method url-fetch)
@ -176,7 +176,7 @@ (define-public help2man
version ".tar.xz"))
(sha256
(base32
"0miqq77ssk5rgsc9xlv7k5n2wk2c5wv2m1kh4zhbwrggfmjaycn2"))))
"0lvp4306f5nq08f3snffs5pp1zwv8l35z6f5g0dds51zs6bzdv6l"))))
(build-system gnu-build-system)
(arguments `(;; There's no `check' target.
#:tests? #f))

5
gnu/packages/markdown.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
;;; Copyright © 2015 David Thompson <davet@gnu.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -31,7 +32,7 @@ (define-module (gnu packages markdown)
(define-public hoedown
(package
(name "hoedown")
(version "3.0.3")
(version "3.0.7")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/hoedown/hoedown/archive/"
@ -39,7 +40,7 @@ (define-public hoedown
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0mmmkfayqgh6k39kbi3pq68mg03x35aiygy3zypxzvwx9y8b53ky"))))
"0859dc2xjasd6kgkshi8mb20kbyw5sql1ln0hw3bfaf33qdh5dh1"))))
(build-system gnu-build-system)
(arguments
'(#:make-flags (list "CC=gcc" (string-append "PREFIX=" %output))

30
gnu/packages/maths.scm
View file

@ -63,6 +63,7 @@ (define-module (gnu packages maths)
#:use-module (gnu packages image)
#:use-module (gnu packages less)
#:use-module (gnu packages lisp)
#:use-module (gnu packages logging)
#:use-module (gnu packages gnome)
#:use-module (gnu packages guile)
#:use-module (gnu packages xorg)
@ -333,7 +334,8 @@ (define-public lapack
(inputs `(("fortran" ,gfortran)
("python" ,python-2)))
(arguments
`(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES")
`(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES"
"-DLAPACKE=ON")
#:phases (alist-cons-before
'check 'patch-python
(lambda* (#:key inputs #:allow-other-keys)
@ -644,10 +646,7 @@ (define-public ceres
(build-system cmake-build-system)
(arguments
;; TODO: Build HTML user documentation and install separately.
;; XXX: Use the embedded "miniglog" as a replacement for
;; <https://github.com/google/glog>. TODO: Use Glog when it's available.
'(#:configure-flags '("-DMINIGLOG=ON"
"-DBUILD_EXAMPLES=OFF"
'(#:configure-flags '("-DBUILD_EXAMPLES=OFF"
"-DBUILD_SHARED_LIBS=ON")
#:phases (modify-phases %standard-phases
@ -660,6 +659,8 @@ (define-public ceres
#t)))))
(native-inputs
`(("pkg-config" ,pkg-config)))
(propagated-inputs
`(("glog" ,glog))) ;for #include <glog/glog.h>
(inputs
`(("eigen" ,eigen)
("blas" ,openblas)
@ -1874,7 +1875,7 @@ (define-public openblas
(define-public openlibm
(package
(name "openlibm")
(version "0.4.1")
(version "0.5.1")
(source
(origin
(method url-fetch)
@ -1883,7 +1884,7 @@ (define-public openlibm
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0cwqqqlblj3kzp9aq1wnpfs1fl0qd1wp1xzm5shb09w06i4rh9nn"))))
"11czx2z7nh6dfpz45s3xl7v38hw36jxzxfvny454bk3if14pfakq"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
@ -1911,7 +1912,7 @@ (define-public openlibm
(define-public openspecfun
(package
(name "openspecfun")
(version "0.4")
(version "0.5.2")
(source
(origin
(method url-fetch)
@ -1920,7 +1921,7 @@ (define-public openspecfun
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0nsa3jjmlhcqkw5ba5ypbn3n0c8b6lc22zzlxnmxkxi9shhdx65z"))))
"1y5b2h6f2k72536kym3vzy3li3bhpd23x463g7hdmjdi3cncavz1"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ;no "check" target
@ -2119,14 +2120,13 @@ (define-public atlas
the machine where it is installed, without resorting to pre-built substitutes.
Before building the library, CPU throttling should be disabled. This can be
done in the BIOS, or, on GNU/Linux, with the following commands:
done in the BIOS, or, on GNU/Linux, with the following command:
cpufreq-selector -g performance -c 0
...
cpufreq-selector -g performance -c N-1
@example
# cpupower --governor performance
@end example
where N is the number of cores of your CPU. Failure to do so will result in a
library with poor performance.")
Failure to do so will result in a library with poor performance.")
(license license:bsd-3)))
(define-public glm

4
gnu/packages/messaging.scm
View file

@ -257,7 +257,7 @@ (define-public ngircd
(define-public pidgin
(package
(name "pidgin")
(version "2.10.11")
(version "2.11.0")
(source
(origin
(method url-fetch)
@ -265,7 +265,7 @@ (define-public pidgin
version "/" name "-" version ".tar.bz2"))
(sha256
(base32
"01s0q30qrjlzj7kkz6f8lvrwsdd55a9yjh2xjjwyyxzw849j3bpj"))
"0crkggjj6y07v1kdwil9vw532b0vrs6p33nmlvdkpnl60m2169pp"))
(patches (search-patches "pidgin-add-search-path.patch"))))
(build-system glib-or-gtk-build-system)
(native-inputs

4
gnu/packages/mpd.scm
View file

@ -71,7 +71,7 @@ (define-public libmpdclient
(define-public mpd
(package
(name "mpd")
(version "0.19.14")
(version "0.19.17")
(source (origin
(method url-fetch)
(uri
@ -80,7 +80,7 @@ (define-public mpd
"/mpd-" version ".tar.xz"))
(sha256
(base32
"1rwr1qb9an1qylddf35xwdasyfkxghd00c29saj04l1f2c2kilig"))))
"1xxjkwbs0d1bdcsykhmw6l1lybpyp2l7b2bw58y1j70w5fnwhzj8"))))
(build-system gnu-build-system)
(inputs `(("ao" ,ao)
("alsa-lib" ,alsa-lib)

71
gnu/packages/music.scm
View file

@ -6,6 +6,7 @@
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;; Copyright © 2016 John J. Foerch <jjfoerch@earthlink.net>
;;;
;;; This file is part of GNU Guix.
;;;
@ -715,6 +716,49 @@ (define-public synthv1
oscillators and stereo effects.")
(license license:gpl2+)))
(define-public amsynth
(package
(name "amsynth")
(version "1.6.4")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/amsynth/amsynth/releases/"
"download/release-" version
"/amsynth-" version ".tar.bz2"))
(sha256
(base32
"07dp9dl38g9krjqxxh89l2z42z08yzrl57cx95b1l67xnxwjp5k3"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'configure 'set-flags
(lambda _
;; Compile with C++11, required by gtkmm.
(setenv "CXXFLAGS" "-std=c++11")
#t)))))
(inputs
`(("alsa-lib" ,alsa-lib)
("jack" ,jack-1)
("lv2" ,lv2)
("libsndfile" ,libsndfile)
("gtk+" ,gtk+-2)
("gtkmm" ,gtkmm-2)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "http://amsynth.github.io")
(synopsis "Analog modeling synthesizer")
(description
"amsynth is an easy-to-use software synthesizer with a classic
subtractive synthesizer topology. Its features include: dual
oscillators (sine, saw, square, noise) with hard sync; 12 and 24 dB/oct
resonant filters (low-pass, high-pass, band-pass, notch); mono, poly, legato
keyboard modes; dual ADSR envelope generators for filter and amplitude; LFO
which can modulate the oscillators, filter, and amplitude; distortion and
reverb effects.")
(license license:gpl2+)))
(define-public setbfree
(package
(name "setbfree")
@ -1594,3 +1638,30 @@ (define-public moc
formats, including most audio formats recognized by FFMpeg.")
(home-page "http://moc.daper.net")
(license license:gpl2+)))
(define-public midicsv
(package
(name "midicsv")
(version "1.1")
(source (origin
(method url-fetch)
(uri (string-append "http://www.fourmilab.ch/webtools/midicsv/"
name "-" version ".tar.gz"))
(sha256
(base32
"1vvhk2nf9ilfw0wchmxy8l13hbw9cnpz079nsx5srsy4nnd78nkw"))))
(build-system gnu-build-system)
(arguments
`(#:phases (modify-phases %standard-phases (delete 'configure))
#:make-flags (list "CC=gcc" (string-append "INSTALL_DEST=" %output))))
(synopsis "Convert MIDI files to and from CSV")
(description
"Midicsv reads a standard MIDI file and decodes it into a comma-separated
value file (CSV), which preserves all the information in the MIDI file. The
ASCII CSV file may be loaded into a spreadsheet or database application, or
processed by a program to transform the MIDI data (for example, to key
transpose a composition or extract a track from a multi-track sequence). A
CSV file in the format created by midicsv may be converted back into a
standard MIDI file with the csvmidi program.")
(home-page "http://www.fourmilab.ch/webtools/midicsv/")
(license license:public-domain)))

2
gnu/packages/networking.scm
View file

@ -4,7 +4,7 @@
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Stefan Reichör <stefan@xsteve.at>
;;; Copyright © 2016 Raimon Grau <raimonster@gmail.com>
;;; Copyright © 2016 Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright 2016 John Darrington <jmd@gnu.org>
;;; Copyright © 2016 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;;

7
gnu/packages/ninja.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -28,7 +29,7 @@ (define-module (gnu packages ninja)
(define-public ninja
(package
(name "ninja")
(version "1.5.3")
(version "1.7.1")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/martine/ninja/"
@ -36,7 +37,7 @@ (define-public ninja
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1h3yfwcfl61v493vna6jia2fizh8rpig7qw2504cvkr6gid3p5bw"))
"06dy2dc1aafm61ynw9gzig88la3km9dsh53bxf4mnw7l7kjisn2i"))
(patches (search-patches "ninja-zero-mtime.patch"
"ninja-tests.patch"))))
(build-system gnu-build-system)
@ -69,7 +70,7 @@ (define-public ninja
(install-file "ninja" bin)
(install-file "doc/manual.asciidoc" doc)
#t))))))
(home-page "http://martine.github.io/ninja/")
(home-page "https://ninja-build.org/")
(synopsis "Small build system")
(description
"Ninja is a small build system with a focus on speed. It differs from

19
gnu/packages/node.scm
View file

@ -2,6 +2,7 @@
;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015, 2016 David Thompson <davet@gnu.org>
;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -99,7 +100,23 @@ (define-public node
(zero? (apply system*
(string-append (assoc-ref inputs "python")
"/bin/python")
"configure" flags))))))))
"configure" flags)))))
(replace 'patch-shebangs
(lambda* (#:key outputs #:allow-other-keys #:rest all)
;; Work around <http://bugs.gnu.org/23723>.
(let* ((patch (assoc-ref %standard-phases 'patch-shebangs))
(npm (string-append (assoc-ref outputs "out")
"/bin/npm"))
(target (readlink npm)))
(and (apply patch all)
(with-directory-excursion (dirname npm)
;; Turn NPM into a symlink to TARGET again, which 'npm'
;; relies on for the resolution of relative file names
;; in JS files.
(delete-file target)
(rename-file npm target)
(symlink target npm)
#t))))))))
(native-inputs
`(("python" ,python-2)
("perl" ,perl)

4
gnu/packages/openstack.scm
View file

@ -529,14 +529,14 @@ (define-public python2-oslo.serialization
(define-public python-oslosphinx
(package
(name "python-oslosphinx")
(version "4.2.0")
(version "4.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "oslosphinx" version))
(sha256
(base32
"178svff46pmynpsnw06gpxk0w13p1gwkqbsvyxphblxv9wl09ksz"))))
"0cz8ym4i1n4rgljlqhyhfkpgdmid7nkb909k8r8nk186m9cmpla2"))))
(build-system python-build-system)
(propagated-inputs
`(("python-requests" ,python-requests)))

17
gnu/packages/owncloud.scm
View file

@ -34,14 +34,27 @@ (define-module (gnu packages owncloud)
(define-public owncloud-client
(package
(name "owncloud-client")
(version "2.2.1")
(version "2.2.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://download.owncloud.com/desktop/stable/"
"owncloudclient-" version ".tar.xz"))
(sha256
(base32 "1wis62jk4y4mbr25y39y6af57pi6vp2mbryazmvn6zgnygf69m3h"))))
(base32 "0m0pxv12w72qqgxim9fh8w3bgkgnhpjyay8ldll3nnzq1jmhk09n"))
(modules '((guix build utils)))
(snippet
'(begin
;; only allows bundled libcrashreporter-qt
(delete-file-recursively "src/3rdparty/libcrashreporter-qt")
;; we already package qtkeychain and sqlite
(delete-file-recursively "src/3rdparty/qtkeychain")
(delete-file-recursively "src/3rdparty/sqlite3")
;; qjson is packaged, qprogessindicator, qlockedfile, qtokenizer and
;; qtsingleapplication have not yet been packaged, but all are
;; explicitly used from the 3rdparty folder during build.
;; We can also remove the macgoodies folder
(delete-file-recursively "src/3rdparty/qtmacgoodies")))))
(build-system cmake-build-system)
(arguments
`(#:phases

7
gnu/packages/package-management.scm
View file

@ -192,7 +192,8 @@ (define (copy arch)
(propagated-inputs
`(("gnutls" ,gnutls) ;for 'guix download' & co.
("guile-json" ,guile-json)
("geiser" ,geiser))) ;for guix.el
("geiser" ,geiser) ;for guix.el
("emacs-magit-popup" ,emacs-magit-popup))) ;for "M-x guix" command
(home-page "http://www.gnu.org/software/guix")
(synopsis "Functional package manager for installed software packages and versions")
@ -474,13 +475,13 @@ (define-public rpm
(define-public diffoscope
(package
(name "diffoscope")
(version "51")
(version "54")
(source (origin
(method url-fetch)
(uri (pypi-uri name version))
(sha256
(base32
"18rn6rrwh586228vnaf1nq0wayh19zbvfc0qmnbys6ln2pv2v007"))))
"1dv46ywzcll3mlqgvr48mq7rncizfvsic62c6dd2kdhynb22087n"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases

4
gnu/packages/parallel.scm
View file

@ -44,7 +44,7 @@ (define-module (gnu packages parallel)
(define-public parallel
(package
(name "parallel")
(version "20160522")
(version "20160622")
(source
(origin
(method url-fetch)
@ -52,7 +52,7 @@ (define-public parallel
version ".tar.bz2"))
(sha256
(base32
"03r07ksxw5xx946x9s26ivifgldr8bc9bz6da4wfrd0dx4546xyy"))))
"1axng9bwapmb0vrrv67pp787gv7r5g02zyrfwnrhpxhi8zmm1jmg"))))
(build-system gnu-build-system)
(inputs `(("perl" ,perl)))
(home-page "http://www.gnu.org/software/parallel/")

256
gnu/packages/patches/avrdude-fix-libusb.patch
View file

@ -1,256 +0,0 @@
Avrdude cannot build with our version of libusb. This patch fixes that.
See http://savannah.nongnu.org/bugs/?41854
diff --git a/dfu.c b/dfu.c
index 7d349bc..0f80440 100644
--- a/dfu.c
+++ b/dfu.c
@@ -36,13 +36,14 @@
#ifndef HAVE_LIBUSB
-int dfu_open(struct dfu_dev *dfu, char *port_name) {
+struct dfu_dev * dfu_open(char *port_spec) {
fprintf(stderr, "%s: Error: No USB support in this compile of avrdude\n",
progname);
- return -1;
+ return NULL;
}
-int dfu_init(struct dfu_dev *dfu, unsigned short usb_pid) {
+int dfu_init(struct dfu_dev *dfu,
+ unsigned short vid, unsigned short pid) {
return -1;
}
diff --git a/flip1.c b/flip1.c
index b891d80..0959996 100644
--- a/flip1.c
+++ b/flip1.c
@@ -164,6 +164,8 @@ static void flip1_setup(PROGRAMMER * pgm);
static void flip1_teardown(PROGRAMMER * pgm);
/* INTERNAL PROGRAMMER FUNCTION PROTOTYPES */
+#ifdef HAVE_LIBUSB
+// The internal ones are made conditional, as they're not defined further down #ifndef HAVE_LIBUSB
static void flip1_show_info(struct flip1 *flip1);
@@ -177,6 +179,8 @@ static const char * flip1_mem_unit_str(enum flip1_mem_unit mem_unit);
static int flip1_set_mem_page(struct dfu_dev *dfu, unsigned short page_addr);
static enum flip1_mem_unit flip1_mem_unit(const char *name);
+#endif /* HAVE_LIBUSB */
+
/* THE INITPGM FUNCTION DEFINITIONS */
void flip1_initpgm(PROGRAMMER *pgm)
@@ -201,6 +205,7 @@ void flip1_initpgm(PROGRAMMER *pgm)
pgm->teardown = flip1_teardown;
}
+#ifdef HAVE_LIBUSB
/* EXPORTED PROGRAMMER FUNCTION DEFINITIONS */
int flip1_open(PROGRAMMER *pgm, char *port_spec)
@@ -876,3 +881,82 @@ enum flip1_mem_unit flip1_mem_unit(const char *name) {
return FLIP1_MEM_UNIT_EEPROM;
return FLIP1_MEM_UNIT_UNKNOWN;
}
+#else /* HAVE_LIBUSB */
+// Dummy functions
+int flip1_open(PROGRAMMER *pgm, char *port_spec)
+{
+ fprintf(stderr, "%s: Error: No USB support in this compile of avrdude\n",
+ progname);
+ return NULL;
+}
+
+int flip1_initialize(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+void flip1_close(PROGRAMMER* pgm)
+{
+}
+
+void flip1_enable(PROGRAMMER* pgm)
+{
+}
+
+void flip1_disable(PROGRAMMER* pgm)
+{
+}
+
+void flip1_display(PROGRAMMER* pgm, const char *prefix)
+{
+}
+
+int flip1_program_enable(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+int flip1_chip_erase(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+int flip1_read_byte(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned long addr, unsigned char *value)
+{
+ return -1;
+}
+
+int flip1_write_byte(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned long addr, unsigned char value)
+{
+ return -1;
+}
+
+int flip1_paged_load(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned int page_size, unsigned int addr, unsigned int n_bytes)
+{
+ return -1;
+}
+
+int flip1_paged_write(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned int page_size, unsigned int addr, unsigned int n_bytes)
+{
+ return -1;
+}
+
+int flip1_read_sig_bytes(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem)
+{
+ return -1;
+}
+
+void flip1_setup(PROGRAMMER * pgm)
+{
+}
+
+void flip1_teardown(PROGRAMMER * pgm)
+{
+}
+
+
+#endif /* HAVE_LIBUSB */
\ No newline at end of file
diff --git a/flip2.c b/flip2.c
index ed8e996..16c4bf8 100644
--- a/flip2.c
+++ b/flip2.c
@@ -151,6 +151,8 @@ static void flip2_setup(PROGRAMMER * pgm);
static void flip2_teardown(PROGRAMMER * pgm);
/* INTERNAL PROGRAMMER FUNCTION PROTOTYPES */
+#ifdef HAVE_LIBUSB
+// The internal ones are made conditional, as they're not defined further down #ifndef HAVE_LIBUSB
static void flip2_show_info(struct flip2 *flip2);
@@ -171,6 +173,8 @@ static const char * flip2_status_str(const struct dfu_status *status);
static const char * flip2_mem_unit_str(enum flip2_mem_unit mem_unit);
static enum flip2_mem_unit flip2_mem_unit(const char *name);
+#endif /* HAVE_LIBUSB */
+
/* THE INITPGM FUNCTION DEFINITIONS */
void flip2_initpgm(PROGRAMMER *pgm)
@@ -195,6 +199,7 @@ void flip2_initpgm(PROGRAMMER *pgm)
pgm->teardown = flip2_teardown;
}
+#ifdef HAVE_LIBUSB
/* EXPORTED PROGRAMMER FUNCTION DEFINITIONS */
int flip2_open(PROGRAMMER *pgm, char *port_spec)
@@ -922,3 +927,85 @@ enum flip2_mem_unit flip2_mem_unit(const char *name) {
return FLIP2_MEM_UNIT_SIGNATURE;
return FLIP2_MEM_UNIT_UNKNOWN;
}
+
+#else /* HAVE_LIBUSB */
+
+/* EXPORTED PROGRAMMER FUNCTION DEFINITIONS */
+
+int flip2_open(PROGRAMMER *pgm, char *port_spec)
+{
+ fprintf(stderr, "%s: Error: No USB support in this compile of avrdude\n",
+ progname);
+ return NULL;
+}
+
+int flip2_initialize(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+void flip2_close(PROGRAMMER* pgm)
+{
+}
+
+void flip2_enable(PROGRAMMER* pgm)
+{
+}
+
+void flip2_disable(PROGRAMMER* pgm)
+{
+}
+
+void flip2_display(PROGRAMMER* pgm, const char *prefix)
+{
+}
+
+int flip2_program_enable(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+int flip2_chip_erase(PROGRAMMER* pgm, AVRPART *part)
+{
+ return -1;
+}
+
+int flip2_read_byte(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned long addr, unsigned char *value)
+{
+ return -1;
+}
+
+int flip2_write_byte(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned long addr, unsigned char value)
+{
+ return -1;
+}
+
+int flip2_paged_load(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned int page_size, unsigned int addr, unsigned int n_bytes)
+{
+ return -1;
+}
+
+int flip2_paged_write(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem,
+ unsigned int page_size, unsigned int addr, unsigned int n_bytes)
+{
+ return -1;
+}
+
+int flip2_read_sig_bytes(PROGRAMMER* pgm, AVRPART *part, AVRMEM *mem)
+{
+ return -1;
+}
+
+void flip2_setup(PROGRAMMER * pgm)
+{
+}
+
+void flip2_teardown(PROGRAMMER * pgm)
+{
+}
+
+
+#endif /* HAVE_LIBUSB */

69
gnu/packages/patches/clang-3.8-libc-search-path.patch Normal file
View file

@ -0,0 +1,69 @@
Clang attempts to guess file names based on the OS and distro (yes!),
but unfortunately, that doesn't work for us.
This patch makes it easy to insert libc's $libdir so that Clang passes the
correct absolute file name of crt1.o etc. to 'ld'. It also disables all
the distro-specific stuff and removes the hard-coded FHS directory names
to make sure Clang also works on non-GuixSD systems.
This patch makes slight adjustments over "clang-libc-search-path.patch" for
changes in clang 3.8.
--- cfe-3.8.0.src/lib/Driver/ToolChains.cpp
+++ cfe-3.8.0.src/lib/Driver/ToolChains.cpp
@@ -3661,6 +3661,9 @@
GCCInstallation.getTriple().str() + "/bin")
.str());
+ // Comment out the distro-specific tweaks so that they don't bite when
+ // using Guix on a foreign distro.
+#if 0
Distro Distro = DetectDistro(D, Arch);
if (IsOpenSUSE(Distro) || IsUbuntu(Distro)) {
@@ -3702,6 +3705,7 @@
if (IsOpenSUSE(Distro))
ExtraOpts.push_back("--enable-new-dtags");
+#endif
// The selection of paths to try here is designed to match the patterns which
// the GCC driver itself uses, as this is part of the GCC-compatible driver.
@@ -3771,14 +3775,12 @@
addPathIfExists(D, D.Dir + "/../" + OSLibDir, Paths);
}
- addPathIfExists(D, SysRoot + "/lib/" + MultiarchTriple, Paths);
- addPathIfExists(D, SysRoot + "/lib/../" + OSLibDir, Paths);
- addPathIfExists(D, SysRoot + "/usr/lib/" + MultiarchTriple, Paths);
- addPathIfExists(D, SysRoot + "/usr/lib/../" + OSLibDir, Paths);
-
// Try walking via the GCC triple path in case of biarch or multiarch GCC
// installations with strange symlinks.
if (GCCInstallation.isValid()) {
+ // The following code would end up adding things like
+ // "/usr/lib/x86_64-unknown-linux-gnu/../../lib64" to the search path.
+#if 0
addPathIfExists(D,
SysRoot + "/usr/lib/" + GCCInstallation.getTriple().str() +
"/../../" + OSLibDir,
@@ -3791,6 +3793,7 @@
BiarchSibling.gccSuffix(),
Paths);
}
+#endif
// See comments above on the multilib variant for details of why this is
// included even from outside the sysroot.
@@ -3815,8 +3818,9 @@
if (StringRef(D.Dir).startswith(SysRoot))
addPathIfExists(D, D.Dir + "/../lib", Paths);
- addPathIfExists(D, SysRoot + "/lib", Paths);
- addPathIfExists(D, SysRoot + "/usr/lib", Paths);
+ // Add libc's lib/ directory to the search path, so that crt1.o, crti.o,
+ // and friends can be found.
+ addPathIfExists(D, "@GLIBC_LIBDIR@", Paths);
}
bool Linux::HasNativeLLVMSupport() const { return true; }

81
gnu/packages/patches/gd-CVE-2016-5766.patch Normal file
View file

@ -0,0 +1,81 @@
Fix CVE-2016-5766 (Integer Overflow in _gd2GetHeader() resulting in heap
overflow).
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-5766
Adapted from upstream commits:
https://github.com/libgd/libgd/commit/aba3db8ba159465ecec1089027a24835a6da9cc0
https://github.com/libgd/libgd/commit/a6a0e7feabb2a9738086a5dc96348f233c87fa79
Since `patch` cannot apply Git binary diffs, we omit the addition of
'tests/gd2/php_bug_72339.c' and its associated binary data.
From aba3db8ba159465ecec1089027a24835a6da9cc0 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Tue, 28 Jun 2016 16:23:42 +0700
Subject: [PATCH] fix php bug 72339 (CVE-2016-5766), Integer Overflow in
_gd2GetHeader() resulting in heap overflow
---
src/gd_gd2.c | 5 ++++-
tests/gd2/CMakeLists.txt | 1 +
tests/gd2/Makemodule.am | 6 ++++--
tests/gd2/php_bug_72339.c | 21 +++++++++++++++++++++
tests/gd2/php_bug_72339_exp.gd2 | Bin 0 -> 67108882 bytes
5 files changed, 30 insertions(+), 3 deletions(-)
create mode 100644 tests/gd2/php_bug_72339.c
create mode 100644 tests/gd2/php_bug_72339_exp.gd2
diff --git a/src/gd_gd2.c b/src/gd_gd2.c
index fd1e0c9..bdbbecf 100644
--- a/src/gd_gd2.c
+++ b/src/gd_gd2.c
@@ -154,8 +154,11 @@ _gd2GetHeader (gdIOCtxPtr in, int *sx, int *sy,
nc = (*ncx) * (*ncy);
GD2_DBG (printf ("Reading %d chunk index entries\n", nc));
sidx = sizeof (t_chunk_info) * nc;
+ if (overflow2(sidx, nc)) {
+ goto fail1;
+ }
cidx = gdCalloc (sidx, 1);
- if (!cidx) {
+ if (cidx == NULL) {
goto fail1;
}
for (i = 0; i < nc; i++) {
From a6a0e7feabb2a9738086a5dc96348f233c87fa79 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Wed, 29 Jun 2016 09:36:26 +0700
Subject: [PATCH] fix php bug 72339 (CVE-2016-5766), Integer Overflow in
_gd2GetHeader() resulting in heap overflow. Sync with php's sync
---
src/gd_gd2.c | 7 ++++++-
tests/gd2/php_bug_72339.c | 2 +-
2 files changed, 7 insertions(+), 2 deletions(-)
diff --git a/src/gd_gd2.c b/src/gd_gd2.c
index bdbbecf..2837456 100644
--- a/src/gd_gd2.c
+++ b/src/gd_gd2.c
@@ -152,11 +152,16 @@ _gd2GetHeader (gdIOCtxPtr in, int *sx, int *sy,
if (gd2_compressed (*fmt)) {
nc = (*ncx) * (*ncy);
+
GD2_DBG (printf ("Reading %d chunk index entries\n", nc));
+ if (overflow2(sizeof(t_chunk_info), nc)) {
+ goto fail1;
+ }
sidx = sizeof (t_chunk_info) * nc;
- if (overflow2(sidx, nc)) {
+ if (sidx <= 0) {
goto fail1;
}
+
cidx = gdCalloc (sidx, 1);
if (cidx == NULL) {
goto fail1;
--
2.9.1

253
gnu/packages/patches/gd-CVE-2016-6128.patch Normal file
View file

@ -0,0 +1,253 @@
Fix CVE-2016-6128 (invalid color index is not properly handled leading
to denial of service).
https://cve.mitre.org/cgi-bin/cvename.cgi?name=2016-6128
Copied from upstream commits:
https://github.com/libgd/libgd/compare/3fe0a7128bac5000fdcfab888bd2a75ec0c9447d...fd623025505e87bba7ec8555eeb72dae4fb0afd
From 1ccfe21e14c4d18336f9da8515cd17db88c3de61 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:17:39 +0700
Subject: [PATCH 1/8] fix php 72494, invalid color index not handled, can lead
to crash
---
src/gd_crop.c | 4 ++++
tests/CMakeLists.txt | 1 +
tests/Makefile.am | 1 +
3 files changed, 6 insertions(+)
diff --git a/src/gd_crop.c b/src/gd_crop.c
index 0296633..532b49b 100644
--- a/src/gd_crop.c
+++ b/src/gd_crop.c
@@ -136,6 +136,10 @@ BGD_DECLARE(gdImagePtr) gdImageCropThreshold(gdImagePtr im, const unsigned int c
return NULL;
}
+ if (color < 0 || (!gdImageTrueColor(im) && color >= gdImageColorsTotal(im))) {
+ return NULL;
+ }
+
/* TODO: Add gdImageGetRowPtr and works with ptr at the row level
* for the true color and palette images
* new formats will simply work with ptr
diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
index 6f5c786..5093d52 100644
--- a/tests/CMakeLists.txt
+++ b/tests/CMakeLists.txt
@@ -31,6 +31,7 @@ if (BUILD_TEST)
gdimagecolortransparent
gdimagecopy
gdimagecopyrotated
+ gdimagecrop
gdimagefile
gdimagefill
gdimagefilledellipse
diff --git a/tests/Makefile.am b/tests/Makefile.am
index 4f6e756..5a0ebe8 100644
--- a/tests/Makefile.am
+++ b/tests/Makefile.am
@@ -25,6 +25,7 @@ include gdimagecolorresolve/Makemodule.am
include gdimagecolortransparent/Makemodule.am
include gdimagecopy/Makemodule.am
include gdimagecopyrotated/Makemodule.am
+include gdimagecrop/Makemodule.am
include gdimagefile/Makemodule.am
include gdimagefill/Makemodule.am
include gdimagefilledellipse/Makemodule.am
--
2.9.1
From 8c9f39c7cb1f62ea00bc7a48aff64d3811c2d6d0 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:20:07 +0700
Subject: [PATCH 2/8] fix php 72494, invalid color index not handled, can lead
to crash
---
tests/gdimagecrop/.gitignore | 1 +
1 file changed, 1 insertion(+)
create mode 100644 tests/gdimagecrop/.gitignore
diff --git a/tests/gdimagecrop/.gitignore b/tests/gdimagecrop/.gitignore
new file mode 100644
index 0000000..8e8c9c3
--- /dev/null
+++ b/tests/gdimagecrop/.gitignore
@@ -0,0 +1 @@
+/php_bug_72494
--
2.9.1
From 8de370b7b6263a02268037a7cd13ddd991b43ea9 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:24:50 +0700
Subject: [PATCH 3/8] fix php 72494, invalid color index not handled, can lead
to crash
---
tests/gdimagecrop/CMakeLists.txt | 5 +++++
1 file changed, 5 insertions(+)
create mode 100644 tests/gdimagecrop/CMakeLists.txt
diff --git a/tests/gdimagecrop/CMakeLists.txt b/tests/gdimagecrop/CMakeLists.txt
new file mode 100644
index 0000000..f7e4c7e
--- /dev/null
+++ b/tests/gdimagecrop/CMakeLists.txt
@@ -0,0 +1,5 @@
+SET(TESTS_FILES
+ php_bug_72494
+)
+
+ADD_GD_TESTS()
--
2.9.1
From bca12e4e11ecda8a0ea719472700ad5c2b36a0d6 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:25:12 +0700
Subject: [PATCH 4/8] fix php 72494, invalid color index not handled, can lead
to crash
---
tests/gdimagecrop/Makemodule.am | 5 +++++
1 file changed, 5 insertions(+)
create mode 100644 tests/gdimagecrop/Makemodule.am
diff --git a/tests/gdimagecrop/Makemodule.am b/tests/gdimagecrop/Makemodule.am
new file mode 100644
index 0000000..210888b
--- /dev/null
+++ b/tests/gdimagecrop/Makemodule.am
@@ -0,0 +1,5 @@
+libgd_test_programs += \
+ gdimagecrop/php_bug_72494
+
+EXTRA_DIST += \
+ gdimagecrop/CMakeLists.txt
--
2.9.1
From 6ff72ae40c7c20ece939afb362d98cc37f4a1c96 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:25:40 +0700
Subject: [PATCH 5/8] fix php 72494, invalid color index not handled, can lead
to crash
---
tests/gdimagecrop/php_bug_72494.c | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
create mode 100644 tests/gdimagecrop/php_bug_72494.c
diff --git a/tests/gdimagecrop/php_bug_72494.c b/tests/gdimagecrop/php_bug_72494.c
new file mode 100644
index 0000000..adaa379
--- /dev/null
+++ b/tests/gdimagecrop/php_bug_72494.c
@@ -0,0 +1,23 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include "gd.h"
+
+#include "gdtest.h"
+
+int main()
+{
+ gdImagePtr im, exp;
+ int error = 0;
+
+ im = gdImageCreate(50, 50);
+
+ if (!im) {
+ gdTestErrorMsg("gdImageCreate failed.\n");
+ return 1;
+ }
+
+ gdImageCropThreshold(im, 1337, 0);
+ gdImageDestroy(im);
+ /* this bug tests a crash, it never reaches this point if the bug exists*/
+ return 0;
+}
--
2.9.1
From a0f9f8f7bd0d3a6c6afd6d180b8e75d93aadddfa Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:38:07 +0700
Subject: [PATCH 6/8] fix php 72494, CID 149753, color is unsigned int, remove
useless <0 comparison
---
src/gd_crop.c | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/gd_crop.c b/src/gd_crop.c
index 532b49b..d51ad67 100644
--- a/src/gd_crop.c
+++ b/src/gd_crop.c
@@ -136,7 +136,7 @@ BGD_DECLARE(gdImagePtr) gdImageCropThreshold(gdImagePtr im, const unsigned int c
return NULL;
}
- if (color < 0 || (!gdImageTrueColor(im) && color >= gdImageColorsTotal(im))) {
+ if (!gdImageTrueColor(im) && color >= gdImageColorsTotal(im)) {
return NULL;
}
--
2.9.1
From 907115fbb980862934d0de91af4977a216745039 Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 11:51:40 +0700
Subject: [PATCH 7/8] fix php 72494, CID 149753, color is unsigned int, remove
useless <0 comparison
---
tests/gdimagecrop/php_bug_72494.c | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/tests/gdimagecrop/php_bug_72494.c b/tests/gdimagecrop/php_bug_72494.c
index adaa379..5cb589b 100644
--- a/tests/gdimagecrop/php_bug_72494.c
+++ b/tests/gdimagecrop/php_bug_72494.c
@@ -6,7 +6,7 @@
int main()
{
- gdImagePtr im, exp;
+ gdImagePtr im;
int error = 0;
im = gdImageCreate(50, 50);
--
2.9.1
From fd623025505e87bba7ec8555eeb72dae4fb0afdc Mon Sep 17 00:00:00 2001
From: Pierre Joye <pierre.php@gmail.com>
Date: Mon, 27 Jun 2016 12:04:25 +0700
Subject: [PATCH 8/8] fix php 72494, CID 149753, color is unsigned int, remove
useless <0 comparison
---
tests/gdimagecrop/php_bug_72494.c | 1 -
1 file changed, 1 deletion(-)
diff --git a/tests/gdimagecrop/php_bug_72494.c b/tests/gdimagecrop/php_bug_72494.c
index 5cb589b..3bd19be 100644
--- a/tests/gdimagecrop/php_bug_72494.c
+++ b/tests/gdimagecrop/php_bug_72494.c
@@ -7,7 +7,6 @@
int main()
{
gdImagePtr im;
- int error = 0;
im = gdImageCreate(50, 50);
--
2.9.1

55
gnu/packages/patches/gd-CVE-2016-6132.patch Normal file
View file

@ -0,0 +1,55 @@
Fix CVE-2016-6132 (read out-of-bounds when parsing TGA files).
https://cve.mitre.org/cgi-bin/cvename.cgi?name=2016-6132
Copied from upstream commit:
https://github.com/libgd/libgd/commit/ead349e99868303b37f5e6e9d9d680c9dc71ff8d
From ead349e99868303b37f5e6e9d9d680c9dc71ff8d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ond=C5=99ej=20Sur=C3=BD?= <ondrej@sury.org>
Date: Tue, 12 Jul 2016 11:24:09 +0200
Subject: [PATCH] Fix #247, A read out-of-bands was found in the parsing of TGA
files (CVE-2016-6132)
---
src/gd_tga.c | 13 +++++++++++--
1 file changed, 11 insertions(+), 2 deletions(-)
diff --git a/src/gd_tga.c b/src/gd_tga.c
index ef20f86..20fe2d2 100644
--- a/src/gd_tga.c
+++ b/src/gd_tga.c
@@ -237,7 +237,11 @@ int read_image_tga( gdIOCtx *ctx, oTga *tga )
return -1;
}
- gdGetBuf(conversion_buffer, image_block_size, ctx);
+ if (gdGetBuf(conversion_buffer, image_block_size, ctx) != image_block_size) {
+ gd_error("gd-tga: premature end of image data\n");
+ gdFree(conversion_buffer);
+ return -1;
+ }
while (buffer_caret < image_block_size) {
tga->bitmap[buffer_caret] = (int) conversion_buffer[buffer_caret];
@@ -257,11 +261,16 @@ int read_image_tga( gdIOCtx *ctx, oTga *tga )
}
conversion_buffer = (unsigned char *) gdMalloc(image_block_size * sizeof(unsigned char));
if (conversion_buffer == NULL) {
+ gd_error("gd-tga: premature end of image data\n");
gdFree( decompression_buffer );
return -1;
}
- gdGetBuf( conversion_buffer, image_block_size, ctx );
+ if (gdGetBuf(conversion_buffer, image_block_size, ctx) != image_block_size) {
+ gdFree(conversion_buffer);
+ gdFree(decompression_buffer);
+ return -1;
+ }
buffer_caret = 0;
--
2.9.1

66
gnu/packages/patches/gd-CVE-2016-6214.patch Normal file
View file

@ -0,0 +1,66 @@
Fix CVE-2016-6214 (read out-of-bounds when parsing TGA files).
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-6214
Adapted from upstream commit:
https://github.com/libgd/libgd/commit/341aa68843ceceae9ba6e083431f14a07bd92308
Since `patch` cannot apply Git binary diffs, we omit the addition of
'tests/tga/bug00247a.c' and its associated binary data.
From 341aa68843ceceae9ba6e083431f14a07bd92308 Mon Sep 17 00:00:00 2001
From: "Christoph M. Becker" <cmbecker69@gmx.de>
Date: Tue, 12 Jul 2016 19:23:13 +0200
Subject: [PATCH] Unsupported TGA bpp/alphabit combinations should error
gracefully
Currently, only 24bpp without alphabits and 32bpp with 8 alphabits are
really supported. All other combinations will be rejected with a warning.
(cherry picked from commit cb1a0b7e54e9aa118270c23a4a6fe560e4590dc9)
---
src/gd_tga.c | 16 ++++++----------
tests/tga/.gitignore | 1 +
tests/tga/CMakeLists.txt | 1 +
tests/tga/Makemodule.am | 4 +++-
tests/tga/bug00247a.c | 19 +++++++++++++++++++
tests/tga/bug00247a.tga | Bin 0 -> 36 bytes
6 files changed, 30 insertions(+), 11 deletions(-)
create mode 100644 tests/tga/bug00247a.c
create mode 100644 tests/tga/bug00247a.tga
diff --git a/src/gd_tga.c b/src/gd_tga.c
index 20fe2d2..b4f8fa6 100644
--- a/src/gd_tga.c
+++ b/src/gd_tga.c
@@ -99,7 +99,7 @@ BGD_DECLARE(gdImagePtr) gdImageCreateFromTgaCtx(gdIOCtx* ctx)
if (tga->bits == TGA_BPP_24) {
*tpix = gdTrueColor(tga->bitmap[bitmap_caret + 2], tga->bitmap[bitmap_caret + 1], tga->bitmap[bitmap_caret]);
bitmap_caret += 3;
- } else if (tga->bits == TGA_BPP_32 || tga->alphabits) {
+ } else if (tga->bits == TGA_BPP_32 && tga->alphabits) {
register int a = tga->bitmap[bitmap_caret + 3];
*tpix = gdTrueColorAlpha(tga->bitmap[bitmap_caret + 2], tga->bitmap[bitmap_caret + 1], tga->bitmap[bitmap_caret], gdAlphaMax - (a >> 1));
@@ -159,16 +159,12 @@ int read_header_tga(gdIOCtx *ctx, oTga *tga)
printf("wxh: %i %i\n", tga->width, tga->height);
#endif
- switch(tga->bits) {
- case 8:
- case 16:
- case 24:
- case 32:
- break;
- default:
- gd_error("bps %i not supported", tga->bits);
+ if (!((tga->bits == TGA_BPP_24 && tga->alphabits == 0)
+ || (tga->bits == TGA_BPP_32 && tga->alphabits == 8)))
+ {
+ gd_error_ex(GD_WARNING, "gd-tga: %u bits per pixel with %u alpha bits not supported\n",
+ tga->bits, tga->alphabits);
return -1;
- break;
}
tga->ident = NULL;

34
gnu/packages/patches/gd-fix-test-on-i686.patch Normal file
View file

@ -0,0 +1,34 @@
Disable part of the gdimagerotate test on architectures such as i686
where intermediate floating-point operations are done with 80-bit long
doubles, and typically later rounded to 64-bit doubles. This double
rounding causes small differences in the resulting pixel values
compared with other architectures, causing the image comparison to
fail.
Patch by Mark H Weaver <mhw@netris.org>.
--- libgd-2.2.2/tests/gdimagerotate/bug00067.c 1969-12-31 19:00:00.000000000 -0500
+++ libgd-2.2.2/tests/gdimagerotate/bug00067.c 2016-07-18 12:19:19.885423132 -0400
@@ -1,5 +1,6 @@
#include <stdio.h>
#include <stdlib.h>
+#include <float.h>
#include "gd.h"
#include "gdtest.h"
@@ -41,6 +42,7 @@
return 1;
}
+#if FLT_EVAL_METHOD != 2
sprintf(filename, "bug00067_%03d_exp.png", angle);
path = gdTestFilePath2("gdimagerotate", filename);
if (!gdAssertImageEqualsToFile(path, exp)) {
@@ -48,6 +50,7 @@
error += 1;
}
free(path);
+#endif
gdImageDestroy(exp);
}

96
gnu/packages/patches/gimp-CVE-2016-4994.patch Normal file
View file

@ -0,0 +1,96 @@
Fix CVE-2016-4994:
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-4994
Copied from upstream repository:
https://git.gnome.org/browse/gimp/patch/?id=e82aaa4b4ee0703c879e35ea9321fff6be3e9b6f
From e82aaa4b4ee0703c879e35ea9321fff6be3e9b6f Mon Sep 17 00:00:00 2001
From: Shmuel H <shmuelgimp@gmail.com>
Date: Mon, 20 Jun 2016 17:14:41 +0300
Subject: Bug 767873 - (CVE-2016-4994) Multiple Use-After-Free when parsing...
...XCF channel and layer properties
The properties PROP_ACTIVE_LAYER, PROP_FLOATING_SELECTION,
PROP_ACTIVE_CHANNEL saves the current object pointer the @info
structure. Others like PROP_SELECTION (for channel) and
PROP_GROUP_ITEM (for layer) will delete the current object and create
a new object, leaving the pointers in @info invalid (dangling).
Therefore, if a property from the first type will come before the
second, the result will be an UaF in the last lines of xcf_load_image
(when it actually using the pointers from @info).
I wasn't able to exploit this bug because that
g_object_instance->c_class gets cleared by the last g_object_unref and
GIMP_IS_{LAYER,CHANNEL} detects that and return FALSE.
(cherry picked from commit 6d804bf9ae77bc86a0a97f9b944a129844df9395)
---
app/xcf/xcf-load.c | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/app/xcf/xcf-load.c b/app/xcf/xcf-load.c
index b180377..67cc6d4 100644
--- a/app/xcf/xcf-load.c
+++ b/app/xcf/xcf-load.c
@@ -904,6 +904,18 @@ xcf_load_layer_props (XcfInfo *info,
case PROP_GROUP_ITEM:
{
GimpLayer *group;
+ gboolean is_active_layer;
+
+ /* We're going to delete *layer, Don't leave its pointers
+ * in @info. After that, we'll restore them back with the
+ * new pointer. See bug #767873.
+ */
+ is_active_layer = (*layer == info->active_layer);
+ if (is_active_layer)
+ info->active_layer = NULL;
+
+ if (*layer == info->floating_sel)
+ info->floating_sel = NULL;
group = gimp_group_layer_new (image);
@@ -916,6 +928,13 @@ xcf_load_layer_props (XcfInfo *info,
g_object_ref_sink (*layer);
g_object_unref (*layer);
*layer = group;
+
+ if (is_active_layer)
+ info->active_layer = *layer;
+
+ /* Don't restore info->floating_sel because group layers
+ * can't be floating selections
+ */
}
break;
@@ -986,6 +1005,12 @@ xcf_load_channel_props (XcfInfo *info,
{
GimpChannel *mask;
+ /* We're going to delete *channel, Don't leave its pointer
+ * in @info. See bug #767873.
+ */
+ if (*channel == info->active_channel)
+ info->active_channel = NULL;
+
mask =
gimp_selection_new (image,
gimp_item_get_width (GIMP_ITEM (*channel)),
@@ -1000,6 +1025,10 @@ xcf_load_channel_props (XcfInfo *info,
*channel = mask;
(*channel)->boundary_known = FALSE;
(*channel)->bounds_known = FALSE;
+
+ /* Don't restore info->active_channel because the
+ * selection can't be the active channel
+ */
}
break;
--
cgit v0.12

16
gnu/packages/patches/khmer-use-libraries.patch Normal file
View file

@ -0,0 +1,16 @@
Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot
currently be achieved using "--library z,bz2" as instructed in the setup.py.
diff --git a/setup.cfg b/setup.cfg
index c054092..080992e 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,7 +1,7 @@
[build_ext]
define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB
undef = NO_UNIQUE_RC
-# libraries = z,bz2
+libraries = z,bz2
## if using system libraries
include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher
# include-dirs = lib

554
gnu/packages/patches/libmtp-devices.patch
View file

@ -1,554 +0,0 @@
Add additional devices; the patched file corresponds to git commit 8e471b,
to which one additional device has been added as reported at
http://sourceforge.net/p/libmtp/bugs/1422/
diff -u -r libmtp-1.1.9.orig/src/music-players.h libmtp-1.1.9/src/music-players.h
--- libmtp-1.1.9.orig/src/music-players.h 2015-09-19 22:54:24.537330594 +0200
+++ libmtp-1.1.9/src/music-players.h 2015-09-19 23:16:41.079206331 +0200
@@ -47,82 +47,61 @@
* and properties.
*/
{ "Creative", 0x041e, "ZEN Vision", 0x411f,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "Portable Media Center", 0x4123,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Xtra (MTP mode)", 0x4128,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Dell", 0x041e, "DJ (2nd generation)", 0x412f,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Micro (MTP mode)", 0x4130,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Touch (MTP mode)", 0x4131,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Dell", 0x041e, "Dell Pocket DJ (MTP mode)", 0x4132,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
- { "Creative", 0x041e, "ZEN MicroPhoto (alternate version)", 0x4133,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
+ { "Creative", 0x041e, "ZEN MicroPhoto (alternate version)", 0x4133,
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Sleek (MTP mode)", 0x4137,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN MicroPhoto", 0x413c,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Sleek Photo", 0x413d,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Vision:M", 0x413e,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by marazm@o2.pl
{ "Creative", 0x041e, "ZEN V", 0x4150,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by danielw@iinet.net.au
// This version of the Vision:M needs the no release interface flag,
// unclear whether the other version above need it too or not.
{ "Creative", 0x041e, "ZEN Vision:M (DVP-HD0004)", 0x4151,
DEVICE_FLAG_NO_RELEASE_INTERFACE |
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by Darel on the XNJB forums
{ "Creative", 0x041e, "ZEN V Plus", 0x4152,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
{ "Creative", 0x041e, "ZEN Vision W", 0x4153,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Don't add 0x4155: this is a Zen Stone device which is not MTP
// Reported by Paul Kurczaba <paul@kurczaba.com>
{ "Creative", 0x041e, "ZEN", 0x4157,
DEVICE_FLAG_IGNORE_HEADER_ERRORS |
DEVICE_FLAG_BROKEN_SET_SAMPLE_DIMENSIONS |
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by Ringofan <mcroman@users.sourceforge.net>
{ "Creative", 0x041e, "ZEN V 2GB", 0x4158,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by j norment <stormzen@gmail.com>
{ "Creative", 0x041e, "ZEN Mozaic", 0x4161,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by Aaron F. Gonzalez <sub_tex@users.sourceforge.net>
{ "Creative", 0x041e, "ZEN X-Fi", 0x4162,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by farmerstimuli <farmerstimuli@users.sourceforge.net>
{ "Creative", 0x041e, "ZEN X-Fi 3", 0x4169,
- DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL |
- DEVICE_FLAG_BROKEN_GET_OBJECT_PROPVAL },
+ DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST_ALL },
// Reported by Todor Gyumyushev <yodor1@users.sourceforge.net>
{ "ZiiLABS", 0x041e, "Zii EGG", 0x6000,
DEVICE_FLAG_UNLOAD_DRIVER |
@@ -607,8 +586,17 @@
/* https://sourceforge.net/p/libmtp/bugs/1251/ */
{ "Acer", 0x0502, "E39", 0x3643,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1369/ */
+ { "Acer", 0x0502, "liquid e700", 0x3644,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "Acer", 0x0502, "One 7", 0x3657,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/support-requests/183/ */
+ { "Acer", 0x0502, "Z200", 0x3683,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1341/ */
+ { "Acer", 0x0502, "Liquid S56", 0x3725,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* SanDisk
@@ -952,6 +940,7 @@
{ "Archos", 0x0e79, "SPOD (MTP mode)", 0x1341, DEVICE_FLAG_UNLOAD_DRIVER },
{ "Archos", 0x0e79, "5S IT (MTP mode)", 0x1351, DEVICE_FLAG_UNLOAD_DRIVER },
{ "Archos", 0x0e79, "5H IT (MTP mode)", 0x1357, DEVICE_FLAG_UNLOAD_DRIVER },
+ { "Archos", 0x0e79, "48 (MTP mode)", 0x1421, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "Arnova Childpad", 0x1458, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "Arnova 8c G3", 0x145e, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "Arnova 10bG3 Tablet", 0x146b, DEVICE_FLAGS_ANDROID_BUGS },
@@ -973,9 +962,17 @@
{ "Archos", 0x0e79, "70it2 (ID 2)", 0x1569, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "50c", 0x2008, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "C40", 0x31ab, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1393/ */
+ { "Archos", 0x0e79, "Phone", 0x31e1, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1325/ */
+ { "Archos", 0x0e79, "45 Neon", 0x31f3, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1352/ */
+ { "Archos", 0x0e79, "50 Diamond", 0x3229, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos", 0x0e79, "101 G4", 0x4002, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos (for Tesco)", 0x0e79, "Hudl (ID1)", 0x5008, DEVICE_FLAGS_ANDROID_BUGS },
{ "Archos (for Tesco)", 0x0e79, "Hudl (ID2)", 0x5009, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1404/ */
+ { "Archos", 0x0e79, "AC40DTI", 0x5217, DEVICE_FLAGS_ANDROID_BUGS },
/*
* Dunlop (OEM of EGOMAN ltd?) reported by Nanomad
@@ -1181,6 +1178,10 @@
{ "Qualcomm (for OnePlus)", 0x05c6, "One (MTP+ADB)",
0x6765, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1377/ */
+ { "Qualcomm (for Xolo)", 0x901b, "Xolo Black (MTP)",
+ 0x9039, DEVICE_FLAGS_ANDROID_BUGS },
+
{ "Qualcomm (for PhiComm)", 0x05c6, "C230w (MTP)",
0x9039, DEVICE_FLAGS_ANDROID_BUGS },
@@ -1221,6 +1222,9 @@
// Reported by Thomas Bretthauer
{ "Fujitsu, Ltd", 0x04c5, "STYLISTIC M532", 0x133b,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/feature-requests/137/ */
+ { "Fujitsu, Ltd", 0x04c5, "F02-E", 0x1378,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* Palm device userland program named Pocket Tunes
@@ -1247,6 +1251,9 @@
// Reported by anonymous SourceForge user
{ "Medion", 0x066f, "MD8333 (ID2)", 0x8588,
DEVICE_FLAG_UNLOAD_DRIVER | DEVICE_FLAG_BROKEN_MTPGETOBJPROPLIST },
+ /* https://sourceforge.net/p/libmtp/bugs/1359/ */
+ { "Verizon", 0x0408, "Ellipsis 7", 0x3899,
+ DEVICE_FLAGS_ANDROID_BUGS },
// The vendor ID is "Quanta Computer, Inc."
// same as Olivetti Olipad 110
// Guessing on device flags
@@ -1403,6 +1410,9 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "LG Electronics Inc.", 0x1004, "LG2 Optimus", 0x6225,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1386/ */
+ { "LG Electronics Inc.", 0x1004, "LG VS950", 0x622a,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "LG Electronics Inc.", 0x1004, "LG VS870", 0x6239,
DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/992/ */
@@ -1410,6 +1420,8 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "LG Electronics Inc.", 0x1004, "VK810", 0x6265,
DEVICE_FLAGS_ANDROID_BUGS },
+ { "LG Electronics Inc.", 0x1004, "G3", 0x627f,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/support-requests/134/ */
{ "LG Electronics Inc.", 0x1004, "G3 (VS985)", 0x626e,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -1723,8 +1735,12 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia M2 MTP", 0x01aa,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia M2 Dual MTP", 0x01ab,
+ DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z2 MTP", 0x01af,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia Z2 Tablet MTP", 0x01b1,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "SONY", 0x0fce, "Xperia Z Ultra MTP", 0x01b6,
DEVICE_FLAGS_ANDROID_BUGS },
{ "SONY", 0x0fce, "Xperia Z3 MTP", 0x01ba,
@@ -1733,6 +1749,10 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia E3 MTP", 0x01bc,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria Z3+ MTP", 0x01c9,
+ DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria E4g MTP", 0x01cb,
+ DEVICE_FLAG_NONE },
/*
@@ -1788,6 +1808,8 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia M MTP+CDROM", 0x419b,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia Z Ultra MTP+CDROM (ID3)", 0x419c,
+ DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z1 MTP+CDROM", 0x419e,
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia C MTP+CDROM", 0x41a3,
@@ -1796,10 +1818,20 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia M2 MTP+CDROM", 0x41aa,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia M2 Dual MTP+CDROM", 0x41ab,
+ DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z2 MTP+CDROM", 0x41af,
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z3 MTP+CDROM", 0x41ba,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia Z3 Compact MTP+CDROM", 0x41bb,
+ DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia E3 MTP+CDROM", 0x01bc,
+ DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria Z3+ MTP+CDROM", 0x41c9,
+ DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria E4g MTP+CDROM", 0x41cb,
+ DEVICE_FLAG_NONE },
/*
* MTP+ADB personalities of MTP devices (see above)
@@ -1888,6 +1920,8 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia M2 MTP+ADB", 0x51aa,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "Xperia M2 Dual MTP+ADB", 0x51ab,
+ DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z2 MTP+ADB", 0x51af,
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia Z Ultra MTP+ADB", 0x51b6,
@@ -1898,6 +1932,10 @@
DEVICE_FLAG_NONE },
{ "SONY", 0x0fce, "Xperia E3 MTP+ADB", 0x51bc,
DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria Z3+ MTP+ADB", 0x51c9,
+ DEVICE_FLAG_NONE },
+ { "SONY", 0x0fce, "XPeria E4g MTP+ADB", 0x51cb,
+ DEVICE_FLAG_NONE },
/*
* MTP+UMS modes
@@ -1936,6 +1974,9 @@
* Motorola
* Assume DEVICE_FLAG_BROKEN_SET_OBJECT_PROPLIST on all of these.
*/
+ /* https://sourceforge.net/p/libmtp/feature-requests/136/ */
+ { "Motorola", 0x22b8, "XT1524 (MTP)", 0x002e,
+ DEVICE_FLAGS_ANDROID_BUGS },
// Reported by David Boyd <tiggrdave@users.sourceforge.net>
{ "Motorola", 0x22b8, "V3m/V750 verizon", 0x2a65,
DEVICE_FLAG_BROKEN_SET_OBJECT_PROPLIST |
@@ -1952,6 +1993,9 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Motorola", 0x22b8, "Moto X (XT1058)", 0x2e63,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1323/ */
+ { "Motorola", 0x22b8, "Moto X (XT1080)", 0x2e66,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "Motorola", 0x22b8, "Droid Maxx (XT1080)", 0x2e67,
DEVICE_FLAGS_ANDROID_BUGS },
{ "Motorola", 0x22b8, "Droid Ultra", 0x2e68,
@@ -2345,6 +2389,14 @@
/* https://sourceforge.net/p/libmtp/bugs/1244/ */
{ "Asus", 0x0b05, "MemoPad 8 ME181 CX (MTP)", 0x5561,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1406/ */
+ { "Asus", 0x0b05, "Zenfone 2 (MTP)", 0x5600,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1364/ */
+ { "Asus", 0x0b05, "Z00AD (MTP)", 0x5601,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ { "Asus", 0x0b05, "TX201LA (MTP)", 0x561f,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1271/ */
{ "Asus", 0x0b05, "ZenFone 4 (MTP)", 0x580f,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2354,9 +2406,20 @@
/* https://sourceforge.net/p/libmtp/bugs/1258/ */
{ "Asus", 0x0b05, "A450CG (MTP)", 0x5a0f,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1350/ */
+ { "Asus", 0x0b05, "Zenfone 2 ZE550ML (MTP)", 0x5f02,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1364/ */
+ { "Asus", 0x0b05, "Zenfone 2 ZE551ML (MTP)", 0x5f03,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1232/ */
{ "Asus", 0x0b05, "MemoPad 7 (ME572CL)", 0x7772,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1351/ */
+ { "Asus", 0x0b05, "Fonepad 7 (FE375CXG)", 0x7773,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ { "Asus", 0x0b05, "ZenFone 5 A500KL (MTP)", 0x7780,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1247/ */
{ "Asus", 0x0b05, "ZenFone 5 A500KL (MTP+ADB)", 0x7781,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2365,6 +2428,12 @@
/*
* Lenovo
*/
+ /* https://sourceforge.net/p/libmtp/support-requests/178/ */
+ { "Lenovo", 0x17ef, "P70-A", 0x0c02,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1415/ */
+ { "Lenovo", 0x17ef, "P70", 0x2008,
+ DEVICE_FLAGS_ANDROID_BUGS },
// Reported by Richard Körber <shredzone@users.sourceforge.net>
{ "Lenovo", 0x17ef, "K1", 0x740a,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2407,6 +2476,9 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Lenovo", 0x17ef, "Toga Tablet B6000-F", 0x76f2,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1122/ */
+ { "Lenovo", 0x17ef, "S930", 0x7718,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1250/ */
{ "Lenovo", 0x17ef, "A5500-F", 0x772b,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2417,15 +2489,24 @@
/* https://sourceforge.net/p/libmtp/bugs/1155/ */
{ "Lenovo", 0x17ef, "Yoga Tablet 10 B8000-H", 0x76ff,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1391/ */
+ { "Lenovo", 0x17ef, "A7600-F", 0x7731,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1291/ */
{ "Lenovo", 0x17ef, "A3500-F", 0x7737,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/support-requests/186/ */
+ { "Lenovo", 0x17ef, "Yoga Tablet 2 - 1050F", 0x77a4,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/support-requests/168/ */
{ "Lenovo", 0x17ef, "Yoga Tablet 2 Pro", 0x77b1,
DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/feature-requests/125/ */
{ "Lenovo", 0x17ef, "Vibe Z2", 0x77ea,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1360/ */
+ { "Lenovo", 0x17ef, "K3 Note", 0x7883,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* Huawei
@@ -2435,6 +2516,15 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Huawei", 0x12d1, "MTP device (ID2)", 0x1052,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1381/ */
+ { "Huawei", 0x12d1, "H60-L11", 0x1079,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1361/ */
+ { "Huawei", 0x12d1, "Ascend P8 ", 0x1082,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1418/ */
+ { "Huawei", 0x12d1, "Honor 3C ", 0x2012,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "Huawei", 0x12d1, "Mediapad (mode 0)", 0x360f,
DEVICE_FLAGS_ANDROID_BUGS },
// Reported by Bearsh <bearsh@users.sourceforge.net>
@@ -2452,6 +2542,8 @@
/* https://sourceforge.net/p/libmtp/bugs/672/ */
{ "ZTE", 0x19d2, "Grand X In", 0x0343, DEVICE_FLAGS_ANDROID_BUGS },
{ "ZTE", 0x19d2, "V985", 0x0383, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1328/ */
+ { "ZTE", 0x19d2, "V5", 0xffce, DEVICE_FLAGS_ANDROID_BUGS },
/*
* HTC (High Tech Computer Corp)
@@ -2459,6 +2551,12 @@
* Steven Eastland <grassmonk@users.sourceforge.net>
* Kevin Cheng <kache@users.sf.net>
*/
+ /* https://sourceforge.net/p/libmtp/support-requests/181/ */
+ { "HTC", 0x0bb4, "HTC One M9 (MTP)", 0x040b,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1398/ */
+ { "HTC", 0x0bb4, "Spreadtrum SH57MYZ03342 (MTP)", 0x05e3,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* reported by Mikkel Oscar Lyderik <mikkeloscar@gmail.com> */
{ "HTC", 0x0bb4, "HTC Desire 510 (MTP+ADB)", 0x05fd,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2545,6 +2643,9 @@
/* https://sourceforge.net/p/libmtp/bugs/1182/ */
{ "HTC", 0x0bb4, "Desire 310 (MTP)", 0x0ec6,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1420/ */
+ { "HTC", 0x0bb4, "Desire 816G (MTP)", 0x0edb,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "HTC", 0x0bb4, "HTC One (MTP+ADB+CDC)", 0x0f5f,
DEVICE_FLAGS_ANDROID_BUGS },
{ "HTC", 0x0bb4, "HTC One (MTP+CDC)", 0x0f60,
@@ -2658,6 +2759,9 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Amazon", 0x1949, "Kindle Fire (ID5)", 0x0012,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1353/ */
+ { "Amazon", 0x1949, "Kindle Fire HD6", 0x00f2,
+ DEVICE_FLAGS_ANDROID_BUGS },
{ "Amazon", 0x1949, "Fire Phone", 0x0800,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2677,6 +2781,9 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "YiFang", 0x2207, "BQ Tesla", 0x0006,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1354/ */
+ { "Various", 0x2207, "Viewpia DR/bq Kepler Debugging", 0x0011,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* Kobo
@@ -2708,6 +2815,8 @@
{ "Intel", 0x8087, "Foxconn iView i700", 0x0a15, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1237/ */
{ "Intel", 0x8087, "Telcast Air 3G", 0x0a5e, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1338/ */
+ { "Intel", 0x8087, "Chuwi vi8", 0x0a5f, DEVICE_FLAGS_ANDROID_BUGS },
/*
* Xiaomi
@@ -2738,6 +2847,15 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Xiaomi", 0x2717, "Mi-2 (MTP)", 0xf003,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1397/ */
+ { "Xiaomi", 0x2717, "Mi-2s (id2) (MTP)", 0xff40,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1339/ */
+ { "Xiaomi", 0x2717, "Mi-2s (MTP)", 0xff48,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1402/ */
+ { "Xiaomi", 0x2717, "Redmi 2 (MTP)", 0xff60,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* XO Learning Tablet
@@ -2774,6 +2892,9 @@
/* https://sourceforge.net/p/libmtp/bugs/1304/ */
{ "Alcatel", 0x1bbb, "OneTouch 5042D (MTP)", 0xa00e,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1401/ */
+ { "Alcatel", 0x1bbb, "OneTouch Idol 3 (MTP)", 0xaf2b,
+ DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/feature-requests/114/ */
{ "Alcatel", 0x1bbb, "OneTouch 6034R", 0xf003,
DEVICE_FLAGS_ANDROID_BUGS },
@@ -2782,8 +2903,12 @@
* Kyocera
*/
{ "Kyocera", 0x0482, "Rise", 0x0571, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/feature-requests/134/ */
+ { "Kyocera", 0x0482, "Torque Model E6715", 0x0059a, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/discussion/535190/thread/6270f5ce/ */
{ "Kyocera", 0x0482, "KYL22", 0x0810, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1345/ */
+ { "Kyocera", 0x0482, "DuraForce", 0x0979, DEVICE_FLAGS_ANDROID_BUGS },
/*
* HiSense
@@ -2798,12 +2923,20 @@
DEVICE_FLAGS_ANDROID_BUGS },
{ "Hewlett-Packard", 0x03f0, "Slate 7 2800", 0x5d1d,
DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1366/ */
+ { "Hewlett-Packard", 0x03f0, "Slate 10 HD", 0x7e1d,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* MediaTek Inc.
*/
{ "MediaTek Inc", 0x0e8d, "MT5xx and MT6xx SoCs", 0x0050,
DEVICE_FLAGS_ANDROID_BUGS },
+ { "MediaTek Inc", 0x0e8d, "MT65xx", 0x2008,
+ DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/feature-requests/79/ */
+ { "MediaTek Inc", 0x0e8d, "Elephone P8000", 0x201d,
+ DEVICE_FLAGS_ANDROID_BUGS },
/*
* Jolla
@@ -2860,6 +2993,8 @@
{ "Prestigio", 0x29e4, "5505 DUO ", 0x1103, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1243/ */
{ "Prestigio", 0x29e4, "5504 DUO ", 0x1203, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/feature-requests/141/ */
+ { "Prestigio", 0x29e4, "3405 DUO ", 0x3201, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1283/ */
{ "Megafon", 0x201e, "MFLogin3T", 0x42ab, DEVICE_FLAGS_ANDROID_BUGS },
@@ -2867,6 +3002,8 @@
/* https://sourceforge.net/p/libmtp/bugs/1287/ */
{ "Gensis", 0x040d, "GT-7305 ", 0x885c, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/support-requests/182/ */
+ { "Oppo", 0x22d9, "Find 5", 0x2764, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1207/ */
{ "Oppo", 0x22d9, "Find 7 (ID 1)", 0x2765, DEVICE_FLAGS_ANDROID_BUGS },
/* https://sourceforge.net/p/libmtp/bugs/1277/ */
@@ -2916,6 +3053,14 @@
/* https://sourceforge.net/p/libmtp/bugs/1314/ */
{ "BenQ", 0x1d45, "F5", 0x459d, DEVICE_FLAGS_ANDROID_BUGS },
+ /* https://sourceforge.net/p/libmtp/bugs/1362/ */
+ { "TomTom", 0x1390, "Rider 40", 0x5455, DEVICE_FLAGS_ANDROID_BUGS },
+
+ /* https://sourceforge.net/p/libmtp/feature-requests/135/. guessed android. */
+ { "OUYA", 0x2836, "Videogame Console", 0x0010, DEVICE_FLAGS_ANDROID_BUGS },
+
+ /* https://sourceforge.net/p/libmtp/bugs/1383/ */
+ { "BLU", 0x0e8d, "Studio HD", 0x2008, DEVICE_FLAGS_ANDROID_BUGS },
/*
* Other strange stuff.
*/

34
gnu/packages/patches/ninja-tests.patch
View file

@ -1,16 +1,17 @@
SubprocessTest.SetWithLots fails with:
Raise [ulimit -n] well above 1025 to make this test go.
Skip it.
From 67d6b9262efad99f8aad63ab81efc8e689748766 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Sun, 3 Jul 2016 11:55:43 +0300
Subject: [PATCH] patch
SubprocessTest.InterruptChild fails when using 'system*':
*** Failure in src/subprocess_test.cc:83
ExitInterrupted == subproc->Finish()
I can pass it by using 'system' instead of 'system*' when building locally,
but it still failed on Hydra. Skip it.
---
src/subprocess_test.cc | 4 ++++
1 file changed, 4 insertions(+)
--- ninja-1.5.3.orig/src/subprocess_test.cc 2015-01-15 10:34:28.859522176 +0800
+++ ninja-1.5.3/src/subprocess_test.cc 2015-01-15 10:37:52.969572075 +0800
@@ -72,6 +72,7 @@
diff --git a/src/subprocess_test.cc b/src/subprocess_test.cc
index ee16190..a537c11 100644
--- a/src/subprocess_test.cc
+++ b/src/subprocess_test.cc
@@ -72,6 +72,7 @@ TEST_F(SubprocessTest, NoSuchCommand) {
#ifndef _WIN32
@ -18,7 +19,7 @@ but it still failed on Hydra. Skip it.
TEST_F(SubprocessTest, InterruptChild) {
Subprocess* subproc = subprocs_.Add("kill -INT $$");
ASSERT_NE((Subprocess *) 0, subproc);
@@ -82,6 +83,7 @@
@@ -82,6 +83,7 @@ TEST_F(SubprocessTest, InterruptChild) {
EXPECT_EQ(ExitInterrupted, subproc->Finish());
}
@ -26,7 +27,7 @@ but it still failed on Hydra. Skip it.
TEST_F(SubprocessTest, InterruptParent) {
Subprocess* subproc = subprocs_.Add("kill -INT $PPID ; sleep 1");
@@ -169,6 +171,7 @@
@@ -217,6 +219,7 @@ TEST_F(SubprocessTest, SetWithMulti) {
// OS X's process limit is less than 1025 by default
// (|sysctl kern.maxprocperuid| is 709 on 10.7 and 10.8 and less prior to that).
#if !defined(__APPLE__) && !defined(_WIN32)
@ -34,11 +35,14 @@ but it still failed on Hydra. Skip it.
TEST_F(SubprocessTest, SetWithLots) {
// Arbitrary big number; needs to be over 1024 to confirm we're no longer
// hostage to pselect.
@@ -196,6 +199,7 @@
@@ -245,6 +248,7 @@ TEST_F(SubprocessTest, SetWithLots) {
}
ASSERT_EQ(kNumProcs, subprocs_.finished_.size());
}
+#endif
#endif // !__APPLE__ && !_WIN32
#endif // !__APPLE__ && !_WIN32
// TODO: this test could work on Windows, just not sure how to simply
--
2.9.0

47
gnu/packages/patches/openimageio-boost-1.60.patch
View file

@ -1,47 +0,0 @@
From 875fbbd92695397bfc83d1cd5fdd4094e1d50199 Mon Sep 17 00:00:00 2001
From: Larry Gritz <lg@larrygritz.com>
Date: Mon, 28 Dec 2015 11:46:07 -0800
Subject: [PATCH] Python ImageCache binding fixes -- disable broken calls
Some of these calls (thankfully undocumented and presumably unused)
are horribly broken. They compiled before, but with new Boost 1.60
they don't even compile properly. So just comment them out on this
obsolete branch. They are fully fixed in RB-1.6 and beyond.
--- a/src/python/py_imagecache.cpp
+++ b/src/python/py_imagecache.cpp
@@ -199,23 +199,24 @@ void declare_imagecache()
.def("destroy", &ImageCacheWrap::destroy)
.staticmethod("destroy")
.def("clear", &ImageCacheWrap::clear)
- .def("attribute", &ImageCacheWrap::attribute)
+ // .def("attribute", &ImageCacheWrap::attribute)
.def("attribute", &ImageCacheWrap::attribute_int)
.def("attribute", &ImageCacheWrap::attribute_float)
- .def("attribute", &ImageCacheWrap::attribute_double)
- .def("attribute", &ImageCacheWrap::attribute_char)
+ // .def("attribute", &ImageCacheWrap::attribute_double)
+ // .def("attribute", &ImageCacheWrap::attribute_char)
.def("attribute", &ImageCacheWrap::attribute_string)
- .def("getattribute", &ImageCacheWrap::attribute)
+ // .def("getattribute", &ImageCacheWrap::attribute)
.def("getattribute", &ImageCacheWrap::getattribute_int)
.def("getattribute", &ImageCacheWrap::getattribute_float)
- .def("getattribute", &ImageCacheWrap::getattribute_double)
- .def("getattribute", &ImageCacheWrap::getattribute_char)
+ // .def("getattribute", &ImageCacheWrap::getattribute_double)
+ // .def("getattribute", &ImageCacheWrap::getattribute_char)
.def("getattribute", &ImageCacheWrap::getattribute_string)
- .def("resolve_filename", &ImageCacheWrap::resolve_filename)
- .def("get_image_info", &ImageCacheWrap::get_image_info)
- .def("get_image_info", &ImageCacheWrap::get_image_info_old)
+ // .def("get_image_info", &ImageCacheWrap::get_image_info)
+ // .def("get_image_info", &ImageCacheWrap::get_image_info_old)
.def("get_imagespec", &ImageCacheWrap::get_imagespec)
- .def("get_pixels", &ImageCacheWrap::get_pixels)
+ // .def("get_pixels", &ImageCacheWrap::get_pixels)
+ .def("resolve_filename", &ImageCacheWrap::resolve_filename)
+
// .def("get_tile", &ImageCacheWrap::get_tile)
// .def("release_tile", &ImageCacheWrap::release_tile)
// .def("tile_pixels", &ImageCacheWrap::tile_pixels)

21
gnu/packages/patches/python-dendropy-exclude-failing-tests.patch Normal file
View file

@ -0,0 +1,21 @@
diff --git a/dendropy/test/test_phylogenetic_distance_matrix.py b/dendropy/test/test_phylogenetic_distance_matrix.py
index 10c05f5..a18ba52 100644
--- a/dendropy/test/test_phylogenetic_distance_matrix.py
+++ b/dendropy/test/test_phylogenetic_distance_matrix.py
@@ -793,7 +793,7 @@ class PdmUpgmaTree(PdmTreeChecker, unittest.TestCase):
expected_tree=expected_tree)
class NodeToNodeDistancesTest(unittest.TestCase):
-
+ @unittest.expectedFailure
def test_distances(self):
## get distances from ape
# library(ape)
@@ -825,6 +825,7 @@ class NodeToNodeDistancesTest(unittest.TestCase):
e = reference_table[nd1.label, nd2.label]
self.assertAlmostEqual(d, e)
+ @unittest.expectedFailure
def test_mrca(self):
test_runs = [
"hiv1.newick",

372
gnu/packages/patches/sudo-CVE-2015-5602.patch
View file

@ -1,372 +0,0 @@
Based on the patch from https://www.sudo.ws/repos/sudo/raw-rev/c2e36a80a279
Backported to 1.8.15 by Mark H Weaver <mhw@netris.org>
# HG changeset patch
# User Todd C. Miller <Todd.Miller@courtesan.com>
# Date 1452475889 25200
# Node ID c2e36a80a27927c32cba55afae78b8dc830cddc3
# Parent 94ffd6b18431fa4b9ed0a0c3f0b7b9582a4f6bde
Rewritten sudoedit_checkdir support that checks all the dirs in the
path and refuses to follow symlinks in writable directories.
This is a better fix for CVE-2015-5602.
Adapted from a diff by Ben Hutchings. Bug #707
diff -r 94ffd6b18431 -r c2e36a80a279 doc/CONTRIBUTORS
--- a/doc/CONTRIBUTORS Mon Jan 04 10:47:11 2016 -0700
+++ b/doc/CONTRIBUTORS Sun Jan 10 18:31:29 2016 -0700
@@ -58,6 +58,7 @@
Holloway, Nick
Hoover, Adam
Hunter, Michael T.
+ Hutchings, Ben
Irrgang, Eric
Jackson, Brian
Jackson, John R.
diff -r 94ffd6b18431 -r c2e36a80a279 doc/UPGRADE
--- a/doc/UPGRADE Mon Jan 04 10:47:11 2016 -0700
+++ b/doc/UPGRADE Sun Jan 10 18:31:29 2016 -0700
@@ -1,6 +1,15 @@
Notes on upgrading from an older release
========================================
+o Upgrading from a version prior to the post-1.8.15 fix for CVE-2015-5602.
+
+ The meaning of the sudoedit_checkdir sudoers option has changed.
+ Previously, it would only check the parent directory
+ of the file to be edited. After the CVE fix, all directories
+ in the path to be edited are checked and sudoedit will refuse
+ to follow a symbolic link in a directory that is writable by
+ the invoking user.
+
o Upgrading from a version prior to 1.8.15:
Prior to version 1.8.15, when env_reset was enabled (the default)
diff -r 94ffd6b18431 -r c2e36a80a279 doc/sudoers.cat
--- a/doc/sudoers.cat Mon Jan 04 10:47:11 2016 -0700
+++ b/doc/sudoers.cat Sun Jan 10 18:31:29 2016 -0700
@@ -1275,12 +1275,15 @@
system call. This flag is _o_f_f by default.
sudoedit_checkdir
- If set, ssuuddooeeddiitt will refuse to edit files located in a
- directory that is writable by the invoking user unless
- it is run by root. On many systems, this option
- requires that the parent directory of the file to be
- edited be readable by the target user. This flag is
- _o_f_f by default.
+ If set, ssuuddooeeddiitt will check directories in the path to
+ be edited for writability by the invoking user.
+ Symbolic links will not be followed in writable
+ directories and ssuuddooeeddiitt will also refuse to edit a
+ file located in a writable directory. Theses
+ restrictions are not enforced when ssuuddooeeddiitt is invoked
+ as root. On many systems, this option requires that
+ all directories in the path to be edited be readable by
+ the target user. This flag is _o_f_f by default.
sudoedit_follow By default, ssuuddooeeddiitt will not follow symbolic links
when opening files. The _s_u_d_o_e_d_i_t___f_o_l_l_o_w option can be
diff -r 94ffd6b18431 -r c2e36a80a279 doc/sudoers.man.in
--- a/doc/sudoers.man.in Mon Jan 04 10:47:11 2016 -0700
+++ b/doc/sudoers.man.in Sun Jan 10 18:31:29 2016 -0700
@@ -2715,10 +2715,16 @@
.br
If set,
\fBsudoedit\fR
-will refuse to edit files located in a directory that is writable
-by the invoking user unless it is run by root.
-On many systems, this option requires that the parent directory
-of the file to be edited be readable by the target user.
+will check directories in the path to be edited for writability
+by the invoking user.
+Symbolic links will not be followed in writable directories and
+\fBsudoedit\fR
+will also refuse to edit a file located in a writable directory.
+Theses restrictions are not enforced when
+\fBsudoedit\fR
+is invoked as root.
+On many systems, this option requires that all directories
+in the path to be edited be readable by the target user.
This flag is
\fIoff\fR
by default.
diff -r 94ffd6b18431 -r c2e36a80a279 doc/sudoers.mdoc.in
--- a/doc/sudoers.mdoc.in Mon Jan 04 10:47:11 2016 -0700
+++ b/doc/sudoers.mdoc.in Sun Jan 10 18:31:29 2016 -0700
@@ -2549,10 +2549,16 @@
.It sudoedit_checkdir
If set,
.Nm sudoedit
-will refuse to edit files located in a directory that is writable
-by the invoking user unless it is run by root.
-On many systems, this option requires that the parent directory
-of the file to be edited be readable by the target user.
+will check directories in the path to be edited for writability
+by the invoking user.
+Symbolic links will not be followed in writable directories and
+.Nm sudoedit
+will also refuse to edit a file located in a writable directory.
+Theses restrictions are not enforced when
+.Nm sudoedit
+is invoked as root.
+On many systems, this option requires that all directories
+in the path to be edited be readable by the target user.
This flag is
.Em off
by default.
diff -r 94ffd6b18431 -r c2e36a80a279 include/sudo_compat.h
--- a/include/sudo_compat.h Mon Jan 04 10:47:11 2016 -0700
+++ b/include/sudo_compat.h Sun Jan 10 18:31:29 2016 -0700
@@ -182,6 +182,8 @@
# ifndef UTIME_NOW
# define UTIME_NOW -2L
# endif
+#endif
+#if !defined(HAVE_OPENAT) || (!defined(HAVE_FUTIMENS) && !defined(HAVE_UTIMENSAT))
# ifndef AT_FDCWD
# define AT_FDCWD -100
# endif
diff -r 94ffd6b18431 -r c2e36a80a279 src/sudo_edit.c
--- a/src/sudo_edit.c Mon Jan 04 10:47:11 2016 -0700
+++ b/src/sudo_edit.c Sun Jan 10 18:31:29 2016 -0700
@@ -179,13 +179,15 @@
}
#ifndef HAVE_OPENAT
-/* This does not support AT_FDCWD... */
static int
sudo_openat(int dfd, const char *path, int flags, mode_t mode)
{
int fd, odfd;
debug_decl(sudo_openat, SUDO_DEBUG_EDIT)
+ if (dfd == AT_FDCWD)
+ debug_return_int(open(path, flags, mode));
+
/* Save cwd */
if ((odfd = open(".", O_RDONLY)) == -1)
debug_return_int(-1);
@@ -207,6 +209,64 @@
#define openat sudo_openat
#endif /* HAVE_OPENAT */
+#ifdef O_NOFOLLOW
+static int
+sudo_edit_openat_nofollow(int dfd, char *path, int oflags, mode_t mode)
+{
+ debug_decl(sudo_edit_open_nofollow, SUDO_DEBUG_EDIT)
+
+ debug_return_int(openat(dfd, path, oflags|O_NOFOLLOW, mode));
+}
+#else
+/*
+ * Returns true if fd and path don't match or path is a symlink.
+ * Used on older systems without O_NOFOLLOW.
+ */
+static bool
+sudo_edit_is_symlink(int fd, char *path)
+{
+ struct stat sb1, sb2;
+ debug_decl(sudo_edit_is_symlink, SUDO_DEBUG_EDIT)
+
+ /*
+ * Treat [fl]stat() failure like there was a symlink.
+ */
+ if (fstat(fd, &sb1) == -1 || lstat(path, &sb2) == -1)
+ debug_return_bool(true);
+
+ /*
+ * Make sure we did not open a link and that what we opened
+ * matches what is currently on the file system.
+ */
+ if (S_ISLNK(sb2.st_mode) ||
+ sb1.st_dev != sb2.st_dev || sb1.st_ino != sb2.st_ino) {
+ debug_return_bool(true);
+ }
+
+ debug_return_bool(false);
+}
+
+static int
+sudo_edit_openat_nofollow(char *path, int oflags, mode_t mode)
+{
+ struct stat sb1, sb2;
+ int fd;
+ debug_decl(sudo_edit_openat_nofollow, SUDO_DEBUG_EDIT)
+
+ fd = openat(dfd, path, oflags, mode);
+ if (fd == -1)
+ debug_return_int(-1);
+
+ if (sudo_edit_is_symlink(fd, path)) {
+ close(fd);
+ fd = -1;
+ errno = ELOOP;
+ }
+
+ debug_return_int(fd);
+}
+#endif /* O_NOFOLLOW */
+
/*
* Returns true if the directory described by sb is writable
* by the user. We treat directories with the sticky bit as
@@ -245,49 +305,94 @@
debug_return_bool(false);
}
+/*
+ * Directory open flags for use with openat(2) and fstat(2).
+ * Use O_PATH and O_DIRECTORY where possible.
+ */
+#if defined(O_PATH) && defined(O_DIRECTORY)
+# define DIR_OPEN_FLAGS (O_PATH|O_DIRECTORY)
+#elif defined(O_PATH) && !defined(O_DIRECTORY)
+# define DIR_OPEN_FLAGS O_PATH
+#elif !defined(O_PATH) && defined(O_DIRECTORY)
+# define DIR_OPEN_FLAGS (O_RDONLY|O_DIRECTORY)
+#else
+# define DIR_OPEN_FLAGS (O_RDONLY|O_NONBLOCK)
+#endif
+
static int
sudo_edit_open_nonwritable(char *path, int oflags, mode_t mode)
{
- char *base, *dir;
+ int dfd, fd, dflags = DIR_OPEN_FLAGS;
+#if defined(__linux__) && defined(O_PATH)
+ char *opath = path;
+#endif
+ bool is_writable;
struct stat sb;
- int dfd, fd;
debug_decl(sudo_edit_open_nonwritable, SUDO_DEBUG_EDIT)
- base = strrchr(path, '/');
- if (base != NULL) {
- *base++ = '\0';
- dir = path;
+#if defined(__linux__) && defined(O_PATH)
+restart:
+#endif
+ if (path[0] == '/') {
+ dfd = open("/", dflags);
+ path++;
} else {
- base = path;
- dir = ".";
+ dfd = open(".", dflags);
+ if (path[0] == '.' && path[1] == '/')
+ path += 2;
}
-#ifdef O_PATH
- if ((dfd = open(dir, O_PATH)) != -1) {
- /* Linux kernels < 3.6 can't do fstat on O_PATH fds. */
- if (fstat(dfd, &sb) == -1) {
- close(dfd);
- dfd = open(dir, O_RDONLY);
- if (fstat(dfd, &sb) == -1) {
- close(dfd);
- dfd = -1;
- }
- }
- }
-#else
- if ((dfd = open(dir, O_RDONLY)) != -1) {
- if (fstat(dfd, &sb) == -1) {
- close(dfd);
- dfd = -1;
- }
- }
-#endif
- if (base != path)
- base[-1] = '/'; /* restore path */
if (dfd == -1)
debug_return_int(-1);
- if (dir_is_writable(&sb, user_details.uid, user_details.gid,
- user_details.ngroups, user_details.groups)) {
+ for (;;) {
+ char *slash;
+ int subdfd;
+
+ /*
+ * Look up one component at a time, avoiding symbolic links in
+ * writable directories.
+ */
+ if (fstat(dfd, &sb) == -1) {
+ close(dfd);
+#if defined(__linux__) && defined(O_PATH)
+ /* Linux prior to 3.6 can't fstat an O_PATH fd */
+ if (ISSET(dflags, O_PATH)) {
+ CLR(dflags, O_PATH);
+ path = opath;
+ goto restart;
+ }
+#endif
+ debug_return_int(-1);
+ }
+#ifndef O_DIRECTORY
+ if (!S_ISDIR(sb.st_mode)) {
+ close(dfd);
+ errno = ENOTDIR;
+ debug_return_int(-1);
+ }
+#endif
+ is_writable = dir_is_writable(&sb, user_details.uid, user_details.gid,
+ user_details.ngroups, user_details.groups);
+
+ while (path[0] == '/')
+ path++;
+ slash = strchr(path, '/');
+ if (slash == NULL)
+ break;
+ *slash = '\0';
+ if (is_writable)
+ subdfd = sudo_edit_openat_nofollow(dfd, path, dflags, 0);
+ else
+ subdfd = openat(dfd, path, dflags, 0);
+ *slash = '/'; /* restore path */
+ close(dfd);
+ if (subdfd == -1)
+ debug_return_int(-1);
+ path = slash + 1;
+ dfd = subdfd;
+ }
+
+ if (is_writable) {
close(dfd);
errno = EISDIR;
debug_return_int(-1);
@@ -332,27 +437,10 @@
if (!ISSET(oflags, O_NONBLOCK))
(void) fcntl(fd, F_SETFL, fcntl(fd, F_GETFL, 0) & ~O_NONBLOCK);
- /*
- * Treat [fl]stat() failure like an open() failure.
- */
- if (fstat(fd, &sb1) == -1 || lstat(path, &sb2) == -1) {
- const int serrno = errno;
+ if (!ISSET(sflags, CD_SUDOEDIT_FOLLOW) && sudo_edit_is_symlink(fd, path)) {
close(fd);
- errno = serrno;
- debug_return_int(-1);
- }
-
- /*
- * Make sure we did not open a link and that what we opened
- * matches what is currently on the file system.
- */
- if (!ISSET(sflags, CD_SUDOEDIT_FOLLOW)) {
- if (S_ISLNK(sb2.st_mode) ||
- sb1.st_dev != sb2.st_dev || sb1.st_ino != sb2.st_ino) {
- close(fd);
- errno = ELOOP;
- debug_return_int(-1);
- }
+ fd = -1;
+ errno = ELOOP;
}
debug_return_int(fd);

42
gnu/packages/pdf.scm
View file

@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2015, 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
@ -28,6 +28,7 @@ (define-module (gnu packages pdf)
#:use-module (guix build-system cmake)
#:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages compression)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages ghostscript)
@ -157,6 +158,45 @@ (define-public python-poppler-qt4
Poppler PDF rendering library.")
(license license:lgpl2.1+)))
(define-public libharu
(package
(name "libharu")
(version "2.3.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/libharu/libharu/archive/"
"RELEASE_"
(string-join (string-split version #\.) "_")
".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1lm4v539y9cb1lvbq387j57sy7yxda3yv8b1pk8m6zazbp66i7lg"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "--with-zlib="
(assoc-ref %build-inputs "zlib"))
(string-append "--with-png="
(assoc-ref %build-inputs "libpng")))
#:phases
(modify-phases %standard-phases
(add-before 'configure 'autogen
(lambda _ (zero? (system* "autoreconf" "-vif")))))))
(inputs
`(("zlib" ,zlib)
("libpng" ,libpng)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)))
(home-page "http://libharu.org/")
(synopsis "Library for generating PDF files")
(description
"libHaru is a library for generating PDF files. libHaru does not support
reading and editing of existing PDF files.")
(license license:zlib)))
(define-public xpdf
(package
(name "xpdf")

308
gnu/packages/perl.scm
View file

@ -8,6 +8,8 @@
;;; Copyright © 2016 Jochem Raat <jchmrt@riseup.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Coypright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;; Copyright © 2016 Alex Sassmannshausen <alex@pompo.co>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -1002,6 +1004,29 @@ (define-public perl-config-general
options.")
(license (package-license perl))))
(define-public perl-config-ini
(package
(name "perl-config-ini")
(version "0.025")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/R/RJ/RJBS/Config-INI-"
version ".tar.gz"))
(sha256
(base32
"0clphq6a17chvb663fvjnxqvyvh26g03x0fl4bg9vy4ibdnzg2v2"))))
(build-system perl-build-system)
(inputs
`(("perl-mixin-linewise" ,perl-mixin-linewise)
("perl-perlio-utf8_strict" ,perl-perlio-utf8_strict)
("perl-sub-exporter" ,perl-sub-exporter)))
(home-page "http://search.cpan.org/dist/Config-INI")
(synopsis "Simple .ini-file format reader and writer")
(description "@code{Config::INI} is a module that facilates the reading
and writing of @code{.ini}-style configuration files.")
(license (package-license perl))))
(define-public perl-context-preserve
(package
(name "perl-context-preserve")
@ -2458,6 +2483,26 @@ (define-public perl-file-which
"File-Which-" version))
(license (package-license perl))))
(define-public perl-file-zglob
(package
(name "perl-file-zglob")
(version "0.11")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/T/TO/TOKUHIROM/File-Zglob-"
version ".tar.gz"))
(sha256
(base32
"16v61rn0yimpv5kp6b20z2f1c93n5kpsyjvr0gq4w2dc43gfvc8w"))))
(build-system perl-build-system)
(home-page "http://search.cpan.org/dist/File-Zglob")
(synopsis "Extended Unix style glob functionality")
(description "@code{File::Zglob} provides a traditional Unix @code{glob}
functionality; it returns a list of file names that match the given pattern.
For instance, it supports the @code{**/*.pm} form.")
(license (package-license perl))))
(define-public perl-getopt-long-descriptive
(package
(name "perl-getopt-long-descriptive")
@ -2505,6 +2550,29 @@ (define-public perl-getopt-tabular
"Getopt-Tabular-" version))
(license (package-license perl))))
(define-public perl-guard
(package
(name "perl-guard")
(version "1.023")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/M/ML/MLEHMANN/Guard-"
version ".tar.gz"))
(sha256
(base32
"1p6i9mfmbs9cw40jqdv71ihv2xfi0vvlv8bdv2810gf93zwxvi1l"))))
(build-system perl-build-system)
(home-page "http://search.cpan.org/dist/Guard")
(synopsis "Safe cleanup blocks implemented as guards")
(description "@code{Guard} implements so-called @dfn{guards}. A guard is
something (usually an object) that \"guards\" a resource, ensuring that it is
cleaned up when expected.
Specifically, this module supports two different types of guards: guard
objects, which execute a given code block when destroyed, and scoped guards,
which are tied to the scope exit.")
(license (package-license perl))))
(define-public perl-hash-merge
(package
(name "perl-hash-merge")
@ -2592,6 +2660,31 @@ (define-public perl-inc-latest
inc directory within a distribution and are used by Makefile.PL or Build.PL.")
(license asl2.0)))
(define-public perl-io-captureoutput
(package
(name "perl-io-captureoutput")
(version "1.1104")
(source
(origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/D/DA/DAGOLDEN/IO-CaptureOutput-"
version
".tar.gz"))
(sha256
(base32
"0c437zvzpqi8f0h3nmblwdi2bvsb92b7g30fndr7my9qnky35izw"))))
(build-system perl-build-system)
(home-page "http://search.cpan.org/dist/IO-CaptureOutput")
(synopsis "Capture STDOUT and STDERR from Perl code, subprocesses or XS")
(description "@code{IO::CaptureOutput} provides routines for capturing
@code{STDOUT} and @code{STDERR} from perl subroutines, forked system
calls (e.g. @code{system()}, @code{fork()}) and from XS or C modules.
This module is no longer recommended by its maintainer. Users are advised to
try @code{Capture::Tiny} instead.")
(license (package-license perl))))
(define-public perl-io-interactive
(package
(name "perl-io-interactive")
@ -2744,6 +2837,30 @@ (define-public perl-ipc-sharelite
allowing data to be efficiently communicated between processes.")
(license (package-license perl))))
(define-public perl-ipc-system-simple
(package
(name "perl-ipc-system-simple")
(version "1.25")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/P/PJ/PJF/IPC-System-Simple-"
version ".tar.gz"))
(sha256
(base32
"0fsdb81shjj4hifyyzvj7vpkhq5jrfhlcpw2xbjfi1mqz8fsmdpi"))))
(build-system perl-build-system)
(home-page "http://search.cpan.org/dist/IPC-System-Simple")
(synopsis "Run commands simply, with detailed diagnostics")
(description "Calling Perl's in-built @code{system} function is easy,
determining if it was successful is hard. Let's face it, @code{$?} isn't the
nicest variable in the world to play with, and even if you do check it,
producing a well-formatted error string takes a lot of work.
@code{IPC::System::Simple} takes the hard work out of calling external
commands.")
(license (package-license perl))))
(define-public perl-json
(package
(name "perl-json")
@ -2913,6 +3030,30 @@ (define-public perl-list-allutils
List::Util or List::MoreUtils defines, with preference to List::Util.")
(license (package-license perl))))
(define-public perl-list-compare
(package
(name "perl-list-compare")
(version "0.53")
(source
(origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/J/JK/JKEENAN/List-Compare-"
version
".tar.gz"))
(sha256
(base32
"0l451yqhx1hlm7f2c3bjsl3n8w6l1jngrxzyfm2d8d9iggv4zgzx"))))
(build-system perl-build-system)
(native-inputs
`(("perl-io-captureoutput" ,perl-io-captureoutput)))
(home-page "http://search.cpan.org/dist/List-Compare")
(synopsis "Compare elements of two or more lists")
(description "@code{List::Compare} provides a module to perform
comparative operations on two or more lists. Provided operations include
intersections, unions, unique elements, complements and many more.")
(license (package-license perl))))
(define-public perl-list-moreutils
(package
(name "perl-list-moreutils")
@ -2938,6 +3079,39 @@ (define-public perl-list-moreutils
functionality on lists which is not going to go into List::Util.")
(license (package-license perl))))
(define-public perl-list-someutils
(package
(name "perl-list-someutils")
(version "0.52")
(source
(origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/D/DR/DROLSKY/List-SomeUtils-"
version
".tar.gz"))
(sha256
(base32
"1b450jyxaa6q2yl0cdhknr3c2a5s7b9b18ccnwac625c681r130y"))))
(build-system perl-build-system)
(native-inputs
`(("perl-test-leaktrace" ,perl-test-leaktrace)))
(inputs
`(("perl-exporter-tiny" ,perl-exporter-tiny)
("perl-module-implementation"
,perl-module-implementation)))
(home-page "http://search.cpan.org/dist/List-SomeUtils")
(synopsis "Provide the stuff missing in List::Util")
(description "@code{List::SomeUtils} provides some trivial but commonly
needed functionality on lists which is not going to go into @code{List::Util}.
All of the below functions are implementable in only a couple of lines of Perl
code. Using the functions from this module however should give slightly
better performance as everything is implemented in C. The pure-Perl
implementation of these functions only serves as a fallback in case the C
portions of this module couldn't be compiled on this machine.")
(license (package-license perl))))
(define-public perl-memoize-expirelru
(package
(name "perl-memoize-expirelru")
@ -2997,6 +3171,31 @@ (define-public perl-mime-types
knowledge of Apache.")
(license (package-license perl))))
(define-public perl-mixin-linewise
(package
(name "perl-mixin-linewise")
(version "0.108")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/R/RJ/RJBS/Mixin-Linewise-"
version ".tar.gz"))
(sha256
(base32
"1wmfr19w9y8qys7b32mnj1vmps7qwdahqas71a9p62ac8xw0dwkx"))))
(build-system perl-build-system)
(inputs
`(("perl-perlio-utf8_strict" ,perl-perlio-utf8_strict)
("perl-sub-exporter" ,perl-sub-exporter)))
(home-page "http://search.cpan.org/dist/Mixin-Linewise")
(synopsis "Write your linewise code for handles; this does the rest")
(description "It's boring to deal with opening files for IO, converting
strings to handle-like objects, and all that. With
@code{Mixin::Linewise::Readers} and @code{Mixin::Linewise::Writers}, you can
just write a method to handle handles, and methods for handling strings and
file names are added for you.")
(license (package-license perl))))
(define-public perl-module-build-tiny
(package
(name "perl-module-build-tiny")
@ -4154,6 +4353,29 @@ (define-public perl-path-class
directory specifications in a cross-platform manner.")
(license (package-license perl))))
(define-public perl-perlio-utf8_strict
(package
(name "perl-perlio-utf8-strict")
(version "0.006")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/L/LE/LEONT/PerlIO-utf8_strict-"
version ".tar.gz"))
(sha256
(base32
"0qnmiflirfq10jkmrxyy81ch6hzyndfzxqf8maif0fy44kk1004q"))))
(build-system perl-build-system)
(native-inputs
`(("perl-test-exception" ,perl-test-exception)))
(home-page
"http://search.cpan.org/dist/PerlIO-utf8_strict")
(synopsis "Fast and correct UTF-8 IO")
(description "@code{PerlIO::utf8_strict} provides a fast and correct UTF-8
PerlIO layer. Unlike Perl's default @code{:utf8} layer it checks the input
for correctness.")
(license (package-license perl))))
(define-public perl-pod-coverage
(package
(name "perl-pod-coverage")
@ -4939,6 +5161,66 @@ (define-public perl-test-base
patterns, so that you can write tests with a minimum of code.")
(license (package-license perl))))
(define-public perl-test-class
(package
(name "perl-test-class")
(version "0.50")
(source
(origin
(method url-fetch)
(uri (string-append
"https://cpan.metacpan.org/authors/id/E/ET/ETHER/Test-Class-"
version
".tar.gz"))
(sha256
(base32
"0l0kk5jvxjkic2jkf1r7v41irb344aasnzr3f5ygjgxgiknm9489"))))
(build-system perl-build-system)
(native-inputs
`(("perl-test-exception" ,perl-test-exception)))
(inputs
`(("perl-module-runtime" ,perl-module-runtime)
("perl-mro-compat" ,perl-mro-compat)
("perl-try-tiny" ,perl-try-tiny)))
(home-page "http://search.cpan.org/dist/Test-Class")
(synopsis "Easily create test classes in an xUnit/JUnit style")
(description "@code{Test::Class} provides a simple way of creating classes
and objects to test your code in an xUnit style.
Built using @code{Test::Builder}, it was designed to work with other
@code{Test::Builder} based modules (@code{Test::More},
@code{Test::Differences}, @code{Test::Exception}, etc.).")
(license (package-license perl))))
(define-public perl-test-class-most
(package
(name "perl-test-class-most")
(version "0.08")
(source
(origin
(method url-fetch)
(uri (string-append
"mirror://cpan/authors/id/O/OV/OVID/Test-Class-Most-"
version
".tar.gz"))
(sha256
(base32
"1zvx9hil0mg0pnb8xfa4m0xgjpvh8s5gnbyprq3xwpdsdgcdwk33"))))
(build-system perl-build-system)
(native-inputs
`(("perl-module-build" ,perl-module-build)))
(inputs
`(("perl-test-class" ,perl-test-class)
("perl-test-most" ,perl-test-most)
("perl-module-runtime" ,perl-module-runtime)
("perl-try-tiny" ,perl-try-tiny)
("perl-mro-compat" ,perl-mro-compat)))
(home-page "http://search.cpan.org/dist/Test-Class-Most")
(synopsis "Test classes the easy way")
(description "@code{Test::Class::Most} provides some more convenience when
using @code{Test::Class}.")
(license (package-license perl))))
(define-public perl-test-cleannamespaces
(package
(name "perl-test-cleannamespaces")
@ -5651,15 +5933,15 @@ (define-public perl-text-csv
(define-public perl-text-diff
(package
(name "perl-text-diff")
(version "1.41")
(version "1.44")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/O/OV/OVID/"
(uri (string-append "mirror://cpan/authors/id/N/NE/NEILB/"
"Text-Diff-" version ".tar.gz"))
(sha256
(base32
"1ynjsa4sr1yvyh65sdfvahaafglibz70j8b6rj01cg1iisj50zx6"))))
"041v92zla2acdc433f47giridf6p820sdczs7x5d71fhsyza1xsp"))))
(build-system perl-build-system)
(propagated-inputs
`(("perl-algorithm-diff" ,perl-algorithm-diff)))
@ -5806,6 +6088,26 @@ (define-public perl-throwable
as exceptions to standard program flow.")
(license (package-license perl))))
(define-public perltidy
(package
(name "perltidy")
(version "20160302")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/perltidy/Perl-Tidy-"
version ".tar.gz"))
(sha256
(base32
"19yw63yh5s3pq7k3nkw6nsamg5b8vvwyhgbizslgxg0mqgc4xl3d"))))
(build-system perl-build-system)
(home-page "http://perltidy.sourceforge.net/")
(synopsis "Perl script tidier")
(description "This package contains a Perl script which indents and
reformats Perl scripts to make them easier to read. The formatting can be
controlled with command line parameters. The default parameter settings
approximately follow the suggestions in the Perl Style Guide.")
(license gpl2+)))
(define-public perl-tie-ixhash
(package
(name "perl-tie-ixhash")

1
gnu/packages/pumpio.scm
View file

@ -61,7 +61,6 @@ (define-public pumpa
(inputs
`(("aspell" ,aspell)
("qtbase" ,qtbase)
("qjson" ,qjson)
("tidy" ,tidy)))
(synopsis "Qt-based pump.io client")
(description "Pumpa is a simple pump.io client written in C++ and Qt.")

257
gnu/packages/python.scm
View file

@ -22,6 +22,8 @@
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
;;; Copyright © 2016 Daniel Pimentel <d4n1@d4n1.org>
;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2016 Troy Sankey <sankeytms@gmail.com>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;;
;;; This file is part of GNU Guix.
;;;
@ -384,18 +386,18 @@ (define-public python-minimal-wrapper (wrap-python3 python-minimal))
(define-public python-psutil
(package
(name "python-psutil")
(version "3.3.0")
(version "4.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "psutil" version))
(sha256
(base32
"11bd1555vf2ibjnmqf64im5cp55vcqfq45ccinm9ll3bs68na6s2"))))
"1w4r09fvn6kd80m5mx4ws1wz100brkaq6hzzpwrns8cgjzjpl6c6"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(home-page "https://pypi.python.org/pypi/psutil/")
(home-page "https://www.github.com/giampaolo/psutil")
(synopsis "Library for retrieving information on running processes")
(description
"psutil (Python system and process utilities) is a library for retrieving
@ -1139,15 +1141,14 @@ (define-public python2-mechanize
(define-public python-simplejson
(package
(name "python-simplejson")
(version "3.3.0")
(version "3.8.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/s/simplejson/simplejson-"
version ".tar.gz"))
(uri (pypi-uri "simplejson" version))
(sha256
(base32
"07wsry5j44l5zzm74l4j2bvasiq8n5m32f31n2p7c68i5vc6p2ks"))))
"0zylrnax8b6r0ndgni4w9c599fi6wm9vx5g6k3ddqfj3932kk16m"))))
(build-system python-build-system)
(home-page "http://simplejson.readthedocs.org/en/latest/")
(synopsis
@ -2030,14 +2031,14 @@ (define-public python2-testrepository
(define-public python-coverage
(package
(name "python-coverage")
(version "4.0.3")
(version "4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "coverage" version))
(sha256
(base32
"0qjlja8ny4gcfp8abqfwdrvr8qw9kr69lkja0b4cqqbsdmdjgcc5"))))
"01rbr4br4lsk0lwn8fb96zwd2xr4f0mg1w7iq3j11i8f5ig2nqs1"))))
(build-system python-build-system)
(inputs
`(("python-setuptools" ,python-setuptools)))
@ -2083,14 +2084,13 @@ (define-public python2-discover
(define-public behave
(package
(name "behave")
(version "1.2.4")
(version "1.2.5")
(source (origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/b/"
name "/" name "-" version ".tar.gz"))
(uri (pypi-uri "behave" version ".tar.bz2"))
(sha256
(base32
"1v2rfy8xnf0rk7cj4cgr7lam4015d458i7bg0xqs9czfv6njlm14"))))
"1iypp6z46r19n4xmgx6m1lwmlpfjh8vapq8izigrqlaarvp2y64c"))))
(build-system python-build-system)
(inputs
`(("python-setuptools" ,python-setuptools)
@ -3283,15 +3283,14 @@ (define-public python2-numpydoc
(define-public python-numexpr
(package
(name "python-numexpr")
(version "2.4.4")
(version "2.6.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/"
"n/numexpr/numexpr-" version ".tar.gz"))
(uri (pypi-uri "numexpr" version))
(sha256
(base32
"0nsnff5312fm38w6dm34bw7ghfqqy8vl9gig0al963h4mz8zm8nz"))))
"0i6iagl2hhbr8q4qzbbjd859v5806vqylq87fq7pi914ps6d6cag"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ; no tests included
(propagated-inputs
@ -4132,13 +4131,13 @@ (define-public python2-pexpect
(define-public python-setuptools-scm
(package
(name "python-setuptools-scm")
(version "1.9.0")
(version "1.11.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "setuptools_scm" version))
(sha256
(base32
"0y24bl893zk6nrklbvdrlmpkalf214zjn6k1xrglljd29rrn4wxi"))))
"1gqr73i150yzj3mz32854vj93x07yr52kn8fdckwa41ll8wgficc"))))
(build-system python-build-system)
(native-inputs `(("python-setuptools" ,python-setuptools)))
(home-page "https://github.com/pypa/setuptools_scm/")
@ -4507,6 +4506,30 @@ (define-public python-urwid
(define-public python2-urwid
(package-with-python2 python-urwid))
(define-public python-urwidtrees
(package
(name "python-urwidtrees")
(version "1.0.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "urwidtrees" version))
(sha256
(base32
"1zcvy12s7h3fazf33d6y7b4v19p8hg95xqwhqlmw6jz9fq76v9h8"))))
(build-system python-build-system)
(arguments
'(#:tests? #f)) ; no tests
(inputs `(("python-urwid" ,python-urwid)))
(home-page "https://github.com/pazz/urwidtrees")
(synopsis "Tree widgets for urwid")
(description "Urwidtrees is a Widget Container API for the @code{urwid}
toolkit. Use it to build trees of widgets.")
(license gpl3+)))
(define-public python2-urwidtrees
(package-with-python2 python-urwidtrees))
(define-public python-dbus
(package
(name "python-dbus")
@ -4591,14 +4614,14 @@ (define-public python2-apsw
(define-public python-lxml
(package
(name "python-lxml")
(version "3.5.0")
(version "3.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "lxml" version))
(sha256
(base32
"0y7m2s8ci6q642zl85y5axkj8z827l0vhjl532acb75hlkir77rl"))))
(base32
"1pvbmiy2m7jwv493kilbghhj2pkh8wy1na3ji350vhzhlwlclx4w"))))
(build-system python-build-system)
(inputs
`(("libxml2" ,libxml2)
@ -4651,17 +4674,14 @@ (define-public python2-beautifulsoup4
(define-public python2-cssutils
(package
(name "python2-cssutils")
(version "1.0")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/c/cssutils/cssutils-"
version
".zip"))
(uri (pypi-uri "cssutils" version))
(sha256
(base32
"1bwim1353r4hqiir73sn4sc43y7ymh09qx0kly7vj048blppc125"))))
(base32
"0qwha9x1wml2qmipbcz03gndnlwhzrjdvw9i09si247a90l8p8fq"))))
(build-system python-build-system)
(native-inputs
`(("python2-mock" ,python2-mock) ; for the tests
@ -4684,17 +4704,14 @@ (define-public python2-cssutils
(define-public python-cssselect
(package
(name "python-cssselect")
(version "0.9.1")
(version "0.9.2")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/c/cssselect/cssselect-"
version
".tar.gz"))
(uri (pypi-uri "cssselect" version))
(sha256
(base32
"10h623qnp6dp1191jri7lvgmnd4yfkl36k9smqklp1qlf3iafd85"))))
(base32
"1xg6gbva1yswghiycmgincv6ab4bn7hpm720ndbj40h8xycmnfvi"))))
(build-system python-build-system)
(inputs
`(("python-setuptools" ,python-setuptools)))
@ -5961,18 +5978,14 @@ (define-public python2-pretend
(define-public python-cryptography-vectors
(package
(name "python-cryptography-vectors")
(version "1.3.2")
(version "1.3.4")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/"
"3f/fd/"
"5883a7fdfcdf6edec55c58605be99d8c36ce97a9b729763ea9cf30e761b7"
"/cryptography_vectors-" version ".tar.gz"))
(uri (pypi-uri "cryptography_vectors" version))
(sha256
(base32
"0ss682bpgzdfy2vam8yhhrx7p5gnw89ydlvaswqp52za8sd8nsh0"))))
"15h1iz2klnpb4f8djxy7cpbnyn3wbjp7bnj4pz6s7w6plghbq524"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools" ,python-setuptools)))
@ -5989,18 +6002,14 @@ (define-public python2-cryptography-vectors
(define-public python-cryptography
(package
(name "python-cryptography")
(version "1.3.2")
(version "1.3.4")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/"
"04/da/"
"35f9a1d34dab5d777f65fb87731288f338ab0ae46a525ffdf0405b573dd0"
"/cryptography-" version ".tar.gz"))
(uri (pypi-uri "cryptography" version))
(sha256
(base32
"121067qdbzd0ir0nxjdf0kgai7qlsc9yh2xhrj4cavcn4y4gmapv"))))
"1a85l548w5vvq3yhz0az7ajg2ijixzp6gagapw6wgrqvq28ghgs2"))))
(build-system python-build-system)
(inputs
`(("openssl" ,openssl)))
@ -6666,16 +6675,14 @@ (define-public python2-zope-component
(define-public python2-pythondialog
(package
(name "python2-pythondialog")
(version "3.3.0")
(version "3.4.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/"
"python2-pythondialog/python2-pythondialog-"
version ".tar.gz"))
(uri (pypi-uri "python2-pythondialog" version))
(sha256
(base32
"1yhkagsh99bfi592ymczf8rnw8rk6n9hdqy3dd98m3yrx8zmjvry"))))
"0d8k7lxk50imdyx85lv8j98i4c93a71iwpapnl1506rpkbm9qvd9"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -6896,16 +6903,14 @@ (define-public python2-texttable
(define-public python-websocket-client
(package
(name "python-websocket-client")
(version "0.34.0")
(version "0.37.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/w"
"/websocket-client/websocket_client-"
version ".tar.gz"))
(uri (pypi-uri "websocket_client" version))
(sha256
(base32
"1prdx6d49f1cff17kzj15bnz09palfdgc1m5dkq9jd4mr90n4ak8"))))
"0h9glp1jll3z76ly3kg08aqgxqk0a68p4zi9yn50353bh5nj92v7"))))
(build-system python-build-system)
(native-inputs
`(("python-six" ,python-six))) ; for tests
@ -7094,7 +7099,17 @@ (define-public python-pytest-cache
(description "The pytest-cache plugin provides tools to rerun failures from
the last py.test invocation.")
(home-page "https://bitbucket.org/hpk42/pytest-cache/")
(license license:expat)))
(license license:expat)
(properties `((python2-variant . ,(delay python2-pytest-cache))))))
(define-public python2-pytest-cache
(let ((pytest-cache (package-with-python2
(strip-python2-variant python-pytest-cache))))
(package
(inherit pytest-cache)
(native-inputs
`(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs pytest-cache))))))
(define-public python-pytest-localserver
(package
@ -7975,14 +7990,14 @@ (define-public python2-pastescript
(define-public python-pyquery
(package
(name "python-pyquery")
(version "1.2.11")
(version "1.2.13")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyquery" version))
(sha256
(base32
"1ikz1387nsp0pp7mzzr6ip9n5gr67acpap24yn33987v7fkjp0sa"))))
"0j9fsisip21qv4xljsg5dmni1pgpvwrjyyhhql0glydc4bs5rjgv"))))
(build-system python-build-system)
(propagated-inputs
`(("python-lxml" ,python-lxml)
@ -8335,13 +8350,13 @@ (define-public python2-sphinxcontrib-programoutput
(define-public python-sphinx-repoze-autointerface
(package
(name "python-sphinx-repoze-autointerface")
(version "0.7.1")
(version "0.8")
(source (origin
(method url-fetch)
(uri (pypi-uri "repoze.sphinx.autointerface" version))
(sha256
(base32
"016mv3wbylw278wl7z33y2liyra8ljp08zq1g0anzadh1an5zvwp"))))
"08ycivzf7bh4a1zcyp31hbyqs1b2c9r26raa3vxjwwmbfqr3iw4f"))))
(build-system python-build-system)
(propagated-inputs
`(("python-docutils" ,python-docutils)
@ -9123,8 +9138,9 @@ (define-public python-twisted
"0ydxrp9myw1mvsz3qfzx5579y5llmqa82pxvqchgp5syczffi450"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools" ,python-setuptools)
("python-zope-interface" ,python-zope-interface)))
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-zope-interface" ,python-zope-interface)))
(home-page "https://twistedmatrix.com/")
(synopsis "Asynchronous networking framework written in Python")
(description
@ -9209,8 +9225,9 @@ (define-public python-kazoo
(build-system python-build-system)
(arguments '(#:tests? #f)) ; XXX: needs zookeeper
(native-inputs
`(("python-setuptools" ,python-setuptools)
("python-six" ,python-six)))
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-six" ,python-six)))
(home-page "https://kazoo.readthedocs.org")
(synopsis "High-level Zookeeper client library")
(description
@ -9238,9 +9255,10 @@ (define-public python-pykafka
(build-system python-build-system)
(arguments '(#:tests? #f)) ; XXX: needs zookeeper, kafka, etc.
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-gevent" ,python-gevent)
("python-kazoo" ,python-kazoo)
("python-setuptools" ,python-setuptools)
("python-tabulate" ,python-tabulate)))
(inputs
`(("librdkafka" ,librdkafka)))
@ -9277,7 +9295,8 @@ (define-public python-wcwidth
or programs that carefully produce output to be interpreted by one. It is a
Python implementation of the @code{wcwidth} and @code{wcswidth} C functions
specified in POSIX.1-2001 and POSIX.1-2008.")
(license license:expat)))
(license license:expat)
(properties `((python2-variant . ,(delay python2-wcwidth))))))
(define-public python2-wcwidth
(package
@ -9348,10 +9367,11 @@ (define-public python-arrow
(build-system python-build-system)
(native-inputs
`(("python-setuptools" ,python-setuptools)
("python-dateutil" ,python-dateutil-2)
;; For testing
("python-chai" ,python-chai)
("python-simplejson" ,python-simplejson)))
(propagated-inputs
`(("python-dateutil" ,python-dateutil-2)))
(home-page "https://github.com/crsmithdev/arrow/")
(synopsis "Dates and times for Python")
(description
@ -9422,12 +9442,13 @@ (define-public python-cleo
"1k2dcl6mqpn5bljyl6w42rqyd9mb3y9kh2mg7m2x3kfjwvg0rpva"))))
(build-system python-build-system)
(native-inputs
`(("python-psutil" ,python-psutil)
("python-pylev" ,python-pylev)
("python-setuptools" ,python-setuptools)
`(("python-setuptools" ,python-setuptools)
;; For testing
("python-mock" ,python-mock)
("python-pytest" ,python-pytest)))
(propagated-inputs
`(("python-psutil" ,python-psutil)
("python-pylev" ,python-pylev)))
(home-page "https://github.com/sdispater/cleo")
(synopsis "Command-line arguments library for Python")
(description
@ -9507,9 +9528,10 @@ (define-public python-email-validator
(("dnspython3") "dnspython"))
#t)))))
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-dnspython" ,python-dnspython)
("python-idna" ,python-idna)
("python-setuptools" ,python-setuptools)))
("python-idna" ,python-idna)))
(home-page "https://github.com/JoshData/python-email-validator")
(synopsis "Email address validation library for Python")
(description
@ -9564,13 +9586,14 @@ (define-public python-fake-factory
(delete-file "faker/tests/ne_np/__init__.py")
#t)))))
(native-inputs
`(("python-dateutil" ,python-dateutil-2)
("python-setuptools" ,python-setuptools)
("python-six" ,python-six)
`(("python-setuptools" ,python-setuptools)
;; For testing
("python-email-validator" ,python-email-validator)
("python-mock" ,python-mock)
("python-ukpostcodeparser" ,python-ukpostcodeparser)))
(propagated-inputs
`(("python-dateutil" ,python-dateutil-2)
("python-six" ,python-six)))
(home-page "http://github.com/joke2k/faker")
(synopsis "Python package that generates fake data")
(description
@ -9584,9 +9607,9 @@ (define-public python2-fake-factory
python-fake-factory))))
(package
(inherit base)
(native-inputs
(propagated-inputs
`(("python2-ipaddress" ,python2-ipaddress)
,@(package-native-inputs base))))))
,@(package-propagated-inputs base))))))
(define-public python-pyaml
(package
@ -9649,6 +9672,8 @@ (define-public python-orator
(build-system python-build-system)
(arguments '(#:tests? #f)) ; no tests
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-arrow" ,python-arrow)
("python-blinker" ,python-blinker)
("python-cleo" ,python-cleo)
@ -9656,7 +9681,6 @@ (define-public python-orator
("python-inflection" ,python-inflection)
("python-lazy-object-proxy" ,python-lazy-object-proxy)
("python-pyaml" ,python-pyaml)
("python-setuptools" ,python-setuptools)
("python-simplejson" ,python-simplejson)
("python-wrapt" ,python-wrapt)))
(home-page "https://orator-orm.com/")
@ -9671,6 +9695,71 @@ (define-public python2-orator
(let ((base (package-with-python2 (strip-python2-variant python-orator))))
(package
(inherit base)
(native-inputs
(propagated-inputs
`(("python2-ipaddress" ,python2-ipaddress)
,@(package-propagated-inputs base))))))
(define-public python-prompt-toolkit
(package
(name "python-prompt-toolkit")
(version "1.0.3")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/"
"8d/de/412f23919929c01e6b55183e124623f705e4b91796d3d2dce2cb53d595ad/"
"prompt_toolkit-" version ".tar.gz"))
(sha256
(base32
"18lbmmkyjf509klc3217lq0x863pfzix779zx5kp9lms1iph4pl0"))))
(build-system python-build-system)
(inputs `(("python-wcwidth" ,python-wcwidth)
("python-pygments" ,python-pygments)))
(native-inputs `(("python-six" ,python-six)))
(home-page "https://github.com/jonathanslenders/python-prompt-toolkit")
(synopsis "Library for building command line interfaces in Python")
(description
"Prompt-Toolkit is a library for building interactive command line
interfaces in Python. It's like GNU Readline but it also features syntax
highlighting while typing, out-of-the-box multi-line input editing, advanced
code completion, incremental search, support for Chinese double-width
characters, mouse support, and auto suggestions.")
(license bsd-3)
(properties `((python2-variant . ,(delay python2-prompt-toolkit))))))
(define-public python2-prompt-toolkit
(let ((base (package-with-python2 (strip-python2-variant python-prompt-toolkit))))
(package
(inherit base)
(native-inputs
`(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public python-jedi
(package
(name "python-jedi")
(version "0.9.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jedi" version))
(sha256
(base32
"0c8x962ynpx001fdvp07m2q5jk4igkxbj3rmnydavphvlgxijk1v"))))
(build-system python-build-system)
(home-page "https://github.com/davidhalter/jedi")
(synopsis
"Autocompletion for Python that can be used for text editors")
(description
"Jedi is an autocompletion tool for Python that can be used for text editors.")
(license license:expat)
(properties `((python2-variant . ,(delay python2-jedi))))))
(define-public python2-jedi
(let ((base (package-with-python2 (strip-python2-variant python-jedi))))
(package
(inherit base)
(native-inputs
`(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))

87
gnu/packages/qt.scm
View file

@ -302,7 +302,7 @@ (define-public qt-4
(define-public qtbase
(package
(name "qtbase")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -310,8 +310,8 @@ (define-public qtbase
"/submodules/" name "-opensource-src-"
version ".tar.xz"))
(sha256
(base32
"0r3jrqymnnxrig4f11xvs33c26f0kzfakbp3kcbdpv795gpc276h"))
(base32
"0fbwprlhqmdyhh2wb9122fcpq7pbil530iak482b9sy5gqs7i5ij"))
(modules '((guix build utils)))
(snippet
'(begin
@ -328,12 +328,14 @@ (define-public qtbase
`(("alsa-lib" ,alsa-lib)
("cups" ,cups)
("dbus" ,dbus)
("eudev" ,eudev)
("expat" ,expat)
("fontconfig" ,fontconfig)
("freetype" ,freetype)
("glib" ,glib)
("harfbuzz" ,harfbuzz)
("icu4c" ,icu4c)
("libinput" ,libinput)
("libjpeg" ,libjpeg)
("libmng" ,libmng)
("libpng" ,libpng)
@ -435,7 +437,7 @@ (define-public qtbase
(define-public qtsvg
(package (inherit qtbase)
(name "qtsvg")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -444,7 +446,7 @@ (define-public qtsvg
version ".tar.xz"))
(sha256
(base32
"08ca5g46g75acy27jfnvnalmcias5hxmjp7491v3y4k9y7a4ybpi"))))
"1w0jvhgaiddafcms2nv8wl1klg07lncmjwm1zhdw3l6rxi9071sw"))))
(propagated-inputs `())
(native-inputs `(("perl" ,perl)))
(inputs
@ -469,7 +471,7 @@ (define-public qtsvg
(define-public qtimageformats
(package (inherit qtsvg)
(name "qtimageformats")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -478,7 +480,7 @@ (define-public qtimageformats
version ".tar.xz"))
(sha256
(base32
"020v1148433zx4g87z2r8fgff32n0laajxqqsja1l3yzz7jbrwvl"))))
"1p98acvsm3azka2by1ph4gdb31qbnndrr5k5wns4xk2d760y8ifc"))))
(native-inputs `())
(inputs
`(("libmng" ,libmng)
@ -491,7 +493,7 @@ (define-public qtimageformats
(define-public qtx11extras
(package (inherit qtsvg)
(name "qtx11extras")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -500,7 +502,7 @@ (define-public qtx11extras
version ".tar.xz"))
(sha256
(base32
"0l736qiz8adrnh267xz63hv4sph6nhy90h836qfnnmv3p78ipsz8"))))
"0yj5yg2dqkrwbgbicmk2rpqsagmi8dsffkrprpsj0fmkx4awhv5y"))))
(native-inputs `(("perl" ,perl)))
(inputs
`(("mesa" ,mesa)
@ -509,7 +511,7 @@ (define-public qtx11extras
(define-public qtxmlpatterns
(package (inherit qtsvg)
(name "qtxmlpatterns")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -518,14 +520,14 @@ (define-public qtxmlpatterns
version ".tar.xz"))
(sha256
(base32
"0q412jv3xbg7v05b8pbahifwx17gzlp96s90akh6zwhpm8i6xx34"))))
"1966rrk7f6c55k57j33rffdjs77kk4mawrnnl8yv1ckcirxc3np1"))))
(native-inputs `(("perl" ,perl)))
(inputs `(("qtbase" ,qtbase)))))
(define-public qtdeclarative
(package (inherit qtsvg)
(name "qtdeclarative")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -534,7 +536,7 @@ (define-public qtdeclarative
version ".tar.xz"))
(sha256
(base32
"1d2217kxk85kpi7ls08b41hqzy26hvch8m4cgzq6km5sqi5zvz0j"))))
"094gx5mzqzcga97y7ihf052b6i5iv512lh7m0702m5q94nsn1pqw"))))
(native-inputs
`(("perl" ,perl)
("pkg-config" ,pkg-config)
@ -548,7 +550,7 @@ (define-public qtdeclarative
(define-public qtconnectivity
(package (inherit qtsvg)
(name "qtconnectivity")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -557,7 +559,7 @@ (define-public qtconnectivity
version ".tar.xz"))
(sha256
(base32
"06fr9321f52kf0nda9zjjfzp5694hbnx0y0v315iw28mnpvandas"))))
"0sr6sxp0q45pacs25knr28139xdrphcjgrwlksdhdpsryfw19mzi"))))
(native-inputs
`(("perl" ,perl)
("pkg-config" ,pkg-config)
@ -569,7 +571,7 @@ (define-public qtconnectivity
(define-public qtwebsockets
(package (inherit qtsvg)
(name "qtwebsockets")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -578,7 +580,7 @@ (define-public qtwebsockets
version ".tar.xz"))
(sha256
(base32
"0fkj52i4yi6gmq4jfjgdij08cspxspac6mbpf0fknnllimmkl7jm"))))
"1fz0x8570zxc00a22skd848svma3p2g3xyxj14jq10559jihqqil"))))
(native-inputs
`(("perl" ,perl)
("qtdeclarative" ,qtdeclarative)))
@ -587,7 +589,7 @@ (define-public qtwebsockets
(define-public qtsensors
(package (inherit qtsvg)
(name "qtsensors")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -596,7 +598,7 @@ (define-public qtsensors
version ".tar.xz"))
(sha256
(base32
"0bll7ll6s5g8w89knyrc0famjwqyfzwpn512m1f96bf6xwacs967"))))
"0kcrvf6vzn6g2v2m70f9r3raalzmfp48rwjlqhss3w84jfz3y04r"))))
(native-inputs
`(("perl" ,perl)
("qtdeclarative" ,qtdeclarative)))
@ -605,7 +607,7 @@ (define-public qtsensors
(define-public qtmultimedia
(package (inherit qtsvg)
(name "qtmultimedia")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -614,7 +616,7 @@ (define-public qtmultimedia
version ".tar.xz"))
(sha256
(base32
"058523c2qra3d8fq46ygcndnkrbwlh316zy28s2cr5pjr5gmnjyj"))))
"0paffx0614ivjbf87lr9klpbqik6r1pzbc14l41np6d9jv3dqa2f"))))
(native-inputs
`(("perl" ,perl)
("pkg-config" ,pkg-config)
@ -629,7 +631,7 @@ (define-public qtmultimedia
(define-public qtwayland
(package (inherit qtsvg)
(name "qtwayland")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -638,7 +640,7 @@ (define-public qtwayland
version ".tar.xz"))
(sha256
(base32
"1jgghjfrg0wwyfzfwgwhagwxz9k936ylv3w2l9bwlpql8rgm8d11"))))
"1fnvgpi49ilds3ah9iizxj9qhhb5rnwqd9h03bhkwf0ydywv52c4"))))
(native-inputs
`(("glib" ,glib)
("perl" ,perl)
@ -660,7 +662,7 @@ (define-public qtwayland
(define-public qtserialport
(package (inherit qtsvg)
(name "qtserialport")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -669,14 +671,16 @@ (define-public qtserialport
version ".tar.xz"))
(sha256
(base32
"1hp63cgqhps6y1k041lzhcb2b0rcpcmszabnn293q5ilbvla4x0b"))))
"135cbgghxk0c6dblmyyrw6znfb9m8sac9hhyc2dm6vq7vzy8id52"))))
(native-inputs `(("perl" ,perl)))
(inputs `(("qtbase" ,qtbase)))))
(inputs
`(("qtbase" ,qtbase)
("eudev" ,eudev)))))
(define-public qtwebchannel
(package (inherit qtsvg)
(name "qtwebchannel")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -685,7 +689,7 @@ (define-public qtwebchannel
version ".tar.xz"))
(sha256
(base32
"01q80917a1048hdhaii4v50dqs84h16lc9w3v99r9xvspk8vab7q"))))
"10kys3ppjkj60fs1s335fdcpdsbxsjn6ibvm6zph9gqbncabd2l7"))))
(native-inputs
`(("perl" ,perl)
("qtdeclarative" ,qtdeclarative)
@ -695,7 +699,7 @@ (define-public qtwebchannel
(define-public qtlocation
(package (inherit qtsvg)
(name "qtlocation")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -704,7 +708,7 @@ (define-public qtlocation
version ".tar.xz"))
(sha256
(base32
"0qahs7a2n3l4h0bl8bnwci9mzy1vra3zncnzr40csic9ys67ddfk"))))
"0my4pbcxa58yzvdh65l5qx99ln03chjr5c3ml5v37wfk7nx23k69"))))
(native-inputs
`(("perl" ,perl)
("qtdeclarative" ,qtdeclarative)
@ -715,7 +719,7 @@ (define-public qtlocation
(define-public qttools
(package (inherit qtsvg)
(name "qttools")
(version "5.6.1")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
@ -724,7 +728,7 @@ (define-public qttools
version ".tar.xz"))
(sha256
(base32
"0wbzq60d7lkvlb7b5lqcw87qgy6kyjz1npjavz8f4grdxsaqi8vp"))))
"0haic027a2d7p7k8xz83fbvci4a4dln34360rlwgy7hlyy5m4nip"))))
(native-inputs
`(("perl" ,perl)
("qtdeclarative" ,qtdeclarative)))
@ -732,6 +736,25 @@ (define-public qttools
`(("mesa" ,mesa)
("qtbase" ,qtbase)))))
(define-public qtscript
(package (inherit qtsvg)
(name "qtscript")
(version "5.6.1-1")
(source (origin
(method url-fetch)
(uri (string-append "https://download.qt.io/official_releases/qt/"
(version-major+minor version) "/" version
"/submodules/" name "-opensource-src-"
version ".tar.xz"))
(sha256
(base32
"1gini9483flqa9q4a4bl81bh7g5s408bycqykqhgbklmfd29y5lx"))))
(native-inputs
`(("perl" ,perl)
("qttools" ,qttools)))
(inputs
`(("qtbase" ,qtbase)))))
(define-public qjson
(package
(name "qjson")

28
gnu/packages/readline.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -20,6 +21,7 @@ (define-module (gnu packages readline)
#:use-module (guix licenses)
#:use-module (gnu packages)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu))
@ -85,3 +87,29 @@ (define-public readline-6.2
(sha256
(base32
"10ckm2bd2rkxhvdmj7nmbsylmihw0abwcsnxf8y27305183rd9kr"))))))
(define-public rlwrap
(package
(name "rlwrap")
(version "0.42")
(source
(origin
(method url-fetch)
(uri (string-append "http://utopia.knoware.nl/~hlub/uck/rlwrap/rlwrap-"
version ".tar.gz"))
(sha256
(base32
"0i3yz303wscrysyzpdq04h4nrl9ajz9dbwi80risdl5rkm3dhw2s"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl)))
(inputs
`(("readline" ,readline)))
(synopsis "Wrapper to allow the editing of keyboard commands")
(description
"Rlwrap is a 'readline wrapper', a small utility that uses the GNU
readline library to allow the editing of keyboard input for any command. You
should consider rlwrap especially when you need user-defined completion (by way
of completion word lists) and persistent history, or if you want to program
'special effects' using the filter mechanism.")
(home-page "http://utopia.knoware.nl/~hlub/uck/rlwrap/")
(license gpl2+)))

18
gnu/packages/samba.scm
View file

@ -99,14 +99,14 @@ (define (copy dir)
(define-public samba
(package
(name "samba")
(version "4.3.8")
(version "4.3.11")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/samba/ftp/stable/samba-"
version ".tar.gz"))
(sha256
(base32
"041b5frh4ikcka922aqhqjvlv4w2s7jycyykpvsknj0a79ncd79p"))))
"1v2grwivm6rasz1ganbybs0ikz1lydaniy65kxf1v8rl1qqngach"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@ -150,7 +150,7 @@ (define-public samba
`(("perl" ,perl)
("pkg-config" ,pkg-config)
("python" ,python-2))) ; incompatible with Python 3
(home-page "http://www.samba.org/")
(home-page "https://www.samba.org/")
(synopsis
"The standard Windows interoperability suite of programs for GNU and Unix")
(description
@ -165,14 +165,14 @@ (define-public samba
(define-public talloc
(package
(name "talloc")
(version "2.1.5")
(version "2.1.7")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/talloc/talloc-"
version ".tar.gz"))
(sha256
(base32
"1pfx3kmj973hpacfw46fzfnjd7ms1j03ifkc30wk930brx8ffcrq"))))
"01m0kzndciyj43z1zd2nc61xqgh9knjv0w7lk1rrrlj8irr4w58r"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@ -202,14 +202,14 @@ (define-public talloc
(define-public tevent
(package
(name "tevent")
(version "0.9.26")
(version "0.9.28")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/tevent/tevent-"
version ".tar.gz"))
(sha256
(base32
"1gbh6d2m49j1v2hkaiyrh8bj02i5wxd4hqayzk2g44yyivbi8b16"))))
"0a9ml52jjnzz7qg9z750mavlvs1yibjwrzy4yl55dc95j0vm7n84"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@ -237,14 +237,14 @@ (define-public tevent
(define-public ldb
(package
(name "ldb")
(version "1.1.24")
(version "1.1.26")
(source (origin
(method url-fetch)
(uri (string-append "https://www.samba.org/ftp/ldb/ldb-"
version ".tar.gz"))
(sha256
(base32
"08ab66qzigfsfxqdvp6lx1knwsl3sqsww309xbq17l7hfcjgbsa5"))))
"1rmjv12pf57vga8s5z9p9d90rlfckc1lqjbcp89r83cq5fkwfhw8"))))
(build-system gnu-build-system)
(arguments
'(#:phases

4
gnu/packages/scheme.scm
View file

@ -400,7 +400,7 @@ (define-public scheme48
(define-public racket
(package
(name "racket")
(version "6.2.1")
(version "6.5")
(source (origin
(method url-fetch)
(uri (list (string-append "http://mirror.racket-lang.org/installers/"
@ -410,7 +410,7 @@ (define-public racket
version "/racket/racket-" version "-src-unix.tgz")))
(sha256
(base32
"0555j63k7fs10iv0icmivlxpzgp6s7gwcbfddmbwxlf2rk80qhq0"))))
"0gvh7i5k87mg1gpqk8gaq50ja9ksbhnvdqn7qqh0n17byidd6999"))))
(build-system gnu-build-system)
(arguments
'(#:phases

36
gnu/packages/screen.scm
View file

@ -3,6 +3,7 @@
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -49,11 +50,9 @@ (define-public screen
("perl" ,perl)))
(arguments
`(#:configure-flags
;; By default, man and info pages are put in PREFIX/{man,info},
;; but we want them in PREFIX/share/{man,info}.
(let ((out (assoc-ref %outputs "out")))
(list (string-append "--mandir=" out "/share/man")
(string-append "--infodir=" out "/share/info")))))
;; By default, screen supports 16 colors, but we want 256 when
;; ~/.screenrc contains 'term xterm-256color'.
'("--enable-colors256")))
(home-page "http://www.gnu.org/software/screen/")
(synopsis "Full-screen window manager providing multiple terminals")
(description
@ -144,3 +143,30 @@ (define-public byobu
configuration utilities, and system status notifications for the GNU Screen
window manager as well as the Tmux terminal multiplexer.")
(license gpl3+)))
(define-public reptyr
(package
(name "reptyr")
(version "0.6.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/nelhage/reptyr/archive"
"/reptyr-" version ".tar.gz"))
(sha256
(base32
"07pfl0rkgm8m3f3jy8r9l2yvnhf8lgllpsk3mh57mhzdxq8fagf7"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; no tests
#:make-flags (list "CC=gcc"
(string-append "PREFIX=" %output))
#:phases (modify-phases %standard-phases (delete 'configure))))
(home-page "https://github.com/nelhage/reptyr")
(synopsis "Tool for reparenting a running program to a new terminal")
(description
"reptyr is a utility for taking an existing running program and attaching
it to a new terminal. Started a long-running process over @code{ssh}, but have
to leave and don't want to interrupt it? Just start a @code{screen}, use
reptyr to grab it, and then kill the @code{ssh} session and head on home.")
(license expat)))

15
gnu/packages/smalltalk.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -21,6 +22,10 @@ (define-module (gnu packages smalltalk)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages autotools)
#:use-module (gnu packages libffi)
#:use-module (gnu packages libsigsegv)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages zip))
(define-public smalltalk
@ -36,7 +41,13 @@ (define-public smalltalk
(base32
"1k2ssrapfzhngc7bg1zrnd9n2vyxp9c9m70byvsma6wapbvib6l1"))))
(build-system gnu-build-system)
(inputs `(("zip" ,zip)))
(native-inputs
`(("libffi" ,libffi)
("libltdl" ,libltdl)
("libsigsegv" ,libsigsegv)
("pkg-config" ,pkg-config)))
(inputs
`(("zip" ,zip)))
(arguments
`(#:phases (alist-cons-before
'configure 'fix-libc
@ -46,7 +57,7 @@ (define-public smalltalk
(("@LIBC_SO_NAME@") "libc.so")
(("@LIBC_SO_DIR@") (string-append libc "/lib")))))
%standard-phases)))
(home-page "https://www.gnu.org/software/smalltalk/")
(home-page "http://smalltalk.gnu.org/")
(synopsis "Smalltalk environment")
(description
"GNU Smalltalk is a free implementation of the Smalltalk language. It

174
gnu/packages/ssh.scm
View file

@ -1,4 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
@ -20,27 +21,34 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages ssh)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages compression)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages groff)
#:use-module (gnu packages elf)
#:use-module (gnu packages guile)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages autotools)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages perl)
#:use-module (gnu packages ncurses)
#:autoload (gnu packages protobuf) (protobuf)
#:autoload (gnu packages boost) (boost)
#:use-module (gnu packages base)
#:use-module (gnu packages tls)
#:use-module (gnu packages)
#:use-module (guix packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:autoload (gnu packages boost) (boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages elf)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages gperf)
#:use-module (gnu packages groff)
#:use-module (gnu packages guile)
#:use-module (gnu packages linux)
#:use-module (gnu packages m4)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages nettle)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:autoload (gnu packages protobuf) (protobuf)
#:use-module (gnu packages readline)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tls)
#:use-module (gnu packages xorg)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake))
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages))
(define-public libssh
(package
@ -337,7 +345,7 @@ (define-public mosh
(define-public dropbear
(package
(name "dropbear")
(version "2016.72")
(version "2016.73")
(source (origin
(method url-fetch)
(uri (string-append
@ -345,7 +353,7 @@ (define-public dropbear
name "-" version ".tar.bz2"))
(sha256
(base32
"10fnlaf6rm537v3rml1gnd58d42plv2q5cp7svbrysap69npc8wk"))))
"1mzg18jss1bsmcnn88zv7kv5yj01hzimndnd5636hfq9kgva8qaw"))))
(build-system gnu-build-system)
(arguments `(#:tests? #f)) ; There is no "make check" or anything similar
(inputs `(("zlib" ,zlib)))
@ -355,3 +363,129 @@ (define-public dropbear
particularly useful for embedded systems, such as wireless routers.")
(home-page "https://matt.ucc.asn.au/dropbear/dropbear.html")
(license (license:x11-style "" "See file LICENSE."))))
(define-public liboop
(package
(name "liboop")
(version "1.0")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.ofb.net/liboop/liboop-"
version ".tar.gz"))
(sha256
(base32
"0z6rlalhvfca64jpvksppc9bdhs7jwhiw4y35g5ibvh91xp3rn1l"))
(patches (search-patches "liboop-mips64-deplibs-fix.patch"))))
(build-system gnu-build-system)
(home-page "http://www.lysator.liu.se/liboop/")
(synopsis "Event loop library")
(description "Liboop is a low-level event loop management library for
POSIX-based operating systems. It supports the development of modular,
multiplexed applications which may respond to events from several sources. It
replaces the \"select() loop\" and allows the registration of event handlers
for file and network I/O, timers and signals. Since processes use these
mechanisms for almost all external communication, liboop can be used as the
basis for almost any application.")
(license license:lgpl2.1+)))
(define-public lsh
(package
(name "lsh")
(version "2.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/lsh/lsh-"
version ".tar.gz"))
(sha256
(base32
"1qqjy9zfzgny0rkb27c8c7dfsylvb6n0ld8h3an2r83pmaqr9gwb"))
(modules '((guix build utils)))
(snippet
'(begin
(substitute* "src/testsuite/functions.sh"
(("localhost")
;; Avoid host name lookups since they don't work in
;; chroot builds.
"127.0.0.1")
(("set -e")
;; Make tests more verbose.
"set -e\nset -x"))
(substitute* (find-files "src/testsuite" "-test$")
(("localhost") "127.0.0.1"))
(substitute* "src/testsuite/login-auth-test"
(("/bin/cat") "cat"))))))
(build-system gnu-build-system)
(native-inputs
`(("m4" ,m4)
("guile" ,guile-2.0)
("gperf" ,gperf)
("psmisc" ,psmisc))) ; for `killall'
(inputs
`(("nettle" ,nettle-2)
("linux-pam" ,linux-pam)
;; 'rl.c' uses the 'CPPFunction' type, which is no longer in
;; Readline 6.3.
("readline" ,readline-6.2)
("liboop" ,liboop)
("zlib" ,zlib)
("gmp" ,gmp)
;; The server (lshd) invokes xauth when X11 forwarding is requested.
;; This adds 24 MiB (or 27%) to the closure of lsh.
("xauth" ,xauth)))
(arguments
'(;; Skip the `configure' test that checks whether /dev/ptmx &
;; co. work as expected, because it relies on impurities (for
;; instance, /dev/pts may be unavailable in chroots.)
#:configure-flags '("lsh_cv_sys_unix98_ptys=yes")
;; FIXME: Tests won't run in a chroot, presumably because
;; /etc/profile is missing, and thus clients get an empty $PATH
;; and nothing works.
#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'configure 'pre-configure
(lambda* (#:key inputs #:allow-other-keys)
(let* ((nettle (assoc-ref inputs "nettle"))
(sexp-conv (string-append nettle "/bin/sexp-conv")))
;; Make sure 'lsh' and 'lshd' pick 'sexp-conv' in the right place
;; by default.
(substitute* "src/environ.h.in"
(("^#define PATH_SEXP_CONV.*")
(string-append "#define PATH_SEXP_CONV \""
sexp-conv "\"\n")))
;; Same for the 'lsh-authorize' script.
(substitute* "src/lsh-authorize"
(("=sexp-conv")
(string-append "=" sexp-conv)))
;; Tell lshd where 'xauth' lives. Another option would be to
;; hardcode "/run/current-system/profile/bin/xauth", thereby
;; reducing the closure size, but that wouldn't work on foreign
;; distros.
(with-fluids ((%default-port-encoding "ISO-8859-1"))
(substitute* "src/server_x11.c"
(("define XAUTH_PROGRAM.*")
(string-append "define XAUTH_PROGRAM \""
(assoc-ref inputs "xauth")
"/bin/xauth\"\n")))))
;; Tests rely on $USER being set.
(setenv "USER" "guix"))))))
(home-page "http://www.lysator.liu.se/~nisse/lsh/")
(synopsis "GNU implementation of the Secure Shell (ssh) protocols")
(description
"GNU lsh is a free implementation of the SSH version 2 protocol. It is
used to create a secure line of communication between two computers,
providing shell access to the server system from the client. It provides
both the server daemon and the client application, as well as tools for
manipulating key files.")
(license license:gpl2+)))

7
gnu/packages/stalonetray.scm
View file

@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 Raimon Grau <raimonster@gmail.com>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@ -26,16 +27,16 @@ (define-module (gnu packages stalonetray)
(define-public stalonetray
(package
(name "stalonetray")
(version "0.8.1")
(version "0.8.3")
(source
(origin
(method url-fetch)
(uri
(string-append "mirror://sourceforge/stalonetray/stalonetray-"
(string-append "mirror://sourceforge/stalonetray/stalonetray/stalonetray-"
version "/stalonetray-" version ".tar.bz2"))
(sha256
(base32
"1wp8pnlv34w7xizj1vivnc3fkwqq4qgb9dbrsg15598iw85gi8ll"))))
"0k7xnpdb6dvx25d67v0crlr32cdnzykdsi9j889njiididc8lm1n"))))
(inputs `(("libx11" ,libx11)))
(build-system gnu-build-system)
(home-page "http://stalonetray.sourceforge.net")

150
gnu/packages/statistics.scm
View file

@ -165,7 +165,9 @@ (define-public r
("which" ,which) ; for tests/Examples/base-Ex.R
("xz" ,xz)))
(inputs
`(("cairo" ,cairo)
`(;; We need not only cairo here, but pango to ensure that tests for the
;; "cairo" bitmapType plotting backend succeed.
("pango" ,pango)
("curl" ,curl)
("tzdata" ,tzdata)
("gfortran" ,gfortran)
@ -596,7 +598,8 @@ (define-public r-ggplot2
("r-plyr" ,r-plyr)
("r-proto" ,r-proto)
("r-reshape2" ,r-reshape2)
("r-scales" ,r-scales)))
("r-scales" ,r-scales)
("r-svglite" ,r-svglite)))
(home-page "http://ggplot2.org")
(synopsis "An implementation of the grammar of graphics")
(description
@ -608,6 +611,55 @@ (define-public r-ggplot2
aesthetic attributes.")
(license license:gpl2+)))
(define-public r-gdtools
(package
(name "r-gdtools")
(version "0.0.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
"1bmnf9d677f2jy8jnb9ymjz1qzm4yrd0qp6k5qrrly06jfffyx7g"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
("pkg-config" ,pkg-config)))
(inputs
`(("cairo" ,cairo)))
(home-page "http://cran.r-project.org/web/packages/gdtools")
(synopsis "Utilities for graphical rendering")
(description
"The @code{gdtools} package provides functionalities to get font metrics
and to generate base64 encoded string from raster matrix.")
(license license:gpl3)))
(define-public r-svglite
(package
(name "r-svglite")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "svglite" version))
(sha256
(base32
"11ryicjglfi6jvkk4jgg5kra42qbs5z2zid7jjhlslpjcljfwc70"))))
(build-system r-build-system)
(native-inputs `(("r-rcpp" ,r-rcpp)))
(propagated-inputs
`(("r-bh" ,r-bh)
("r-gdtools" ,r-gdtools)))
(home-page "https://github.com/hadley/svglite")
(synopsis "SVG graphics device")
(description
"@code{svglite} is a graphics device that produces clean
@dfn{SVG} (Scalable Vector Graphics) output, suitable for use on the web, or
hand editing. Compared to the built-in @code{svg()}, @code{svglite} is
considerably faster, produces smaller files, and leaves text as is.")
(license license:gpl2+)))
(define-public r-assertthat
(package
(name "r-assertthat")
@ -1353,6 +1405,25 @@ (define-public r-coda
chain.")
(license license:gpl2+)))
(define-public r-ade4
(package
(name "r-ade4")
(version "1.7-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ade4" version))
(sha256
(base32
"17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7"))))
(build-system r-build-system)
(home-page "http://pbil.univ-lyon1.fr/ADE-4")
(synopsis "Multivariate data analysis and graphical display")
(description
"The ade4 package contains data analysis functions to analyze ecological
and environmental data in the framework of Euclidean exploratory methods.")
(license license:gpl2+)))
(define-public r-xml2
(package
(name "r-xml2")
@ -1377,6 +1448,32 @@ (define-public r-xml2
files in R. It is built on top of the libxml2 C library.")
(license license:gpl2+)))
(define-public r-multitaper
(package
(name "r-multitaper")
(version "1.0-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "multitaper" version))
(sha256
(base32
"1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(home-page "http://github.com/wesleyburr/multitaper/")
(synopsis "Multitaper spectral analysis tools")
(description
"This package implements multitaper spectral estimation
techniques using prolate spheroidal sequences (Slepians) and sine
tapers for time series analysis. It includes an adaptive weighted
multitaper spectral estimate, a coherence estimate, Thomson's Harmonic
F-test, and complex demodulation. The Slepians sequences are
generated efficiently using a tridiagonal matrix solution, and
jackknifed confidence intervals are available for most estimates.")
(license license:gpl2+)))
(define-public r-rversions
(package
(name "r-rversions")
@ -2170,6 +2267,29 @@ (define-public r-doparallel
using the parallel package.")
(license license:gpl2+)))
(define-public r-domc
(package
(name "r-domc")
(version "1.3.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "doMC" version))
(sha256
(base32
"0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"))))
(properties `((upstream-name . "doMC")))
(build-system r-build-system)
(propagated-inputs
`(("r-foreach" ,r-foreach)
("r-iterators" ,r-iterators)))
(home-page "http://cran.r-project.org/web/packages/doMC")
(synopsis "Foreach parallel adaptor for the 'parallel' package")
(description
"This package provides a parallel backend for the @code{%dopar%} function
using the multicore functionality of the parallel package.")
(license license:gpl2+)))
(define-public r-dt
(package
(name "r-dt")
@ -2242,6 +2362,32 @@ (define-public r-irlba
analysis of large sparse or dense matrices.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-glmnet
(package
(name "r-glmnet")
(version "2.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
(base32
"1cbpzmbv837fvq88rgn6mgzgr9f1wqp9fg8gh2kkmngvr1957a9c"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
(propagated-inputs
`(("r-foreach" ,r-foreach)))
(home-page "http://www.jstatsoft.org/v33/i01")
(synopsis "Lasso and elastic-net regularized generalized linear models")
(description
"The glmnet package provides efficient procedures for fitting the entire
lasso or elastic-net regularization path for linear and Poisson regression, as
well as logistic, multinomial, Cox, multiple-response Gaussian and grouped
multinomial models. The algorithm uses cyclical coordinate descent in a
path-wise fashion.")
(license license:gpl2+)))
(define-public r-pkgmaker
(package
(name "r-pkgmaker")

2
gnu/packages/tls.scm
View file

@ -6,7 +6,7 @@
;;; Copyright © 2015 David Thompson <davet@gnu.org>
;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Nils Gillmann <niasterisk@grrlz.net>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;;
;;; This file is part of GNU Guix.
;;;

38
gnu/packages/tmux.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -21,11 +22,13 @@ (define-module (gnu packages tmux)
#:use-module (guix licenses)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages libevent)
#:use-module (gnu packages ncurses))
(define-public tmux
(package
(name "tmux")
@ -50,3 +53,38 @@ (define-public tmux
controlled from a single screen. tmux may be detached from a screen and
continue running in the background, then later reattached.")
(license isc)))
(define-public tmux-themepack
(let ((commit "03a372866f7677f7fe63bcee140b48b9fd372c48")
(revision "1"))
(package
(name "tmux-themepack")
(version
(string-append "0.0.0-" revision "." (string-take commit 7))) ;; No version tags
(source (origin
(method git-fetch)
(uri (git-reference
(url
(string-append "https://github.com/jimeh/" name ".git"))
(commit commit)))
(sha256
(base32
"1d3k87mq5lca042jbap5kxskjy3kg79wjhhpnm6jacbn3anc67zl"))
(file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; No test suite.
#:phases (modify-phases %standard-phases
(delete 'configure)
(delete 'build)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (string-append
(assoc-ref outputs "out")
"/share/" ,name "-" ,version)))
(copy-recursively "." out)))))))
(home-page "https://github.com/jimeh/tmux-themepack")
(synopsis "Collection of themes for Tmux")
(description "A collection of various themes for Tmux.")
(license
(non-copyleft "http://www.wtfpl.net/txt/copying/")))))

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