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gnu: r-flowworkspace: Update to 4.4.0.

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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
This commit is contained in:
Ricardo Wurmus 2021-06-05 01:50:03 +02:00
parent b9751b629c
commit 764e2dba20
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GPG key ID: 197A5888235FACAC
1 changed files with 4 additions and 13 deletions
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17
gnu/packages/bioconductor.scm
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@ -9569,27 +9569,16 @@ (define-public r-rprotobuflib
(define-public r-flowworkspace (define-public r-flowworkspace
(package (package
(name "r-flowworkspace") (name "r-flowworkspace")
(version "4.2.0") (version "4.4.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version)) (uri (bioconductor-uri "flowWorkspace" version))
(sha256 (sha256
(base32 (base32
"19svh32jq1dpq3ayhpd5r8bw0iax8d9kdvpvc23gx2pf16g1j5ag")))) "1a9qb2dcvwgb3z0vdbbzn1rzy77d3da72kirs272344hdx9b2cx9"))))
(properties `((upstream-name . "flowWorkspace"))) (properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system) (build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-linking
(lambda _
(substitute* "src/Makevars"
;; This is to avoid having a plain directory on the list of
;; libraries to link.
(("\\{h5lib\\}" match)
(string-append match "/libhdf5.a")))
#t)))))
(propagated-inputs (propagated-inputs
`(("r-aws-s3" ,r-aws-s3) `(("r-aws-s3" ,r-aws-s3)
("r-aws-signature" ,r-aws-signature) ("r-aws-signature" ,r-aws-signature)
@ -9598,6 +9587,7 @@ (define-public r-flowworkspace
("r-biocgenerics" ,r-biocgenerics) ("r-biocgenerics" ,r-biocgenerics)
("r-cytolib" ,r-cytolib) ("r-cytolib" ,r-cytolib)
("r-data-table" ,r-data-table) ("r-data-table" ,r-data-table)
("r-delayedarray" ,r-delayedarray)
("r-digest" ,r-digest) ("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr) ("r-dplyr" ,r-dplyr)
("r-flowcore" ,r-flowcore) ("r-flowcore" ,r-flowcore)
@ -9614,6 +9604,7 @@ (define-public r-flowworkspace
("r-rgraphviz" ,r-rgraphviz) ("r-rgraphviz" ,r-rgraphviz)
("r-rhdf5lib" ,r-rhdf5lib) ("r-rhdf5lib" ,r-rhdf5lib)
("r-rprotobuflib" ,r-rprotobuflib) ("r-rprotobuflib" ,r-rprotobuflib)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales) ("r-scales" ,r-scales)
("r-xml" ,r-xml))) ("r-xml" ,r-xml)))
(native-inputs (native-inputs